Definition Yersinia pseudotuberculosis IP 31758, complete genome.
Accession NC_009708
Length 4,723,306
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 57 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2514667..2515761  PHAGE_Entero_2: P2 gpD-like tail protein; YpsIP31758_2193; phage(gi169936019)  4e-137  Click
2 2515836..2516051  PHAGE_Entero_P2: Ogr; YpsIP31758_2194; phage(gi9630356)  7e-21  Click
3 2516249..2516328  attL    TTTGTTTTACTTAGAATATTTTCCATGGTGCCCGGGGCGGGACTTGAACCCGCACAGCCATAAGCCGAGGGATTTTAAAT  N/A  Click
4 2516836..2517270  hypothetical protein; YpsIP31758_2195  N/A  Click
5 2517282..2517851  hypothetical protein; YpsIP31758_2196  N/A  Click
6 complement(2518391..2519047)  PHAGE_Entero_HK106: tail fiber assembly protein; YpsIP31758_2197; phage(gi428783304)  1e-32  Click
7 complement(2519047..2520255)  PHAGE_Yersin_phiR1_37: putative variable tail fibre protein; YpsIP31758_2198; phage(gi358356781)  2e-28  Click
8 complement(2520267..2520911)  PHAGE_Pectob_ZF40: hypothetical protein; YpsIP31758_2199; phage(gi422936704)  1e-43  Click
9 complement(2520904..2522103)  PHAGE_Pectob_ZF40: putative baseplate protein; YpsIP31758_2200; phage(gi422936703)  3e-151  Click
10 complement(2522103..2522453)  PHAGE_Pectob_ZF40: hypothetical protein; YpsIP31758_2201; phage(gi422936702)  2e-36  Click
11 complement(2522527..2523204)  PHAGE_Pectob_ZF40: putative baseplate protein; YpsIP31758_2202; phage(gi422936701)  3e-70  Click
12 complement(2523212..2524105)  PHAGE_Pectob_ZF40: hypothetical protein; YpsIP31758_2203; phage(gi422936700)  1e-80  Click
13 complement(2524098..2524388)  PHAGE_Pectob_ZF40: hypothetical protein; YpsIP31758_2204; phage(gi422936699)  4e-27  Click
14 complement(2524388..2525056)  PHAGE_Pectob_ZF40: hypothetical protein; YpsIP31758_2205; phage(gi422936698)  8e-49  Click
15 complement(2525056..2526948)  PHAGE_Pectob_ZF40: putative tail-fiber/lysozyme protein; YpsIP31758_2206; phage(gi422936697)  2e-138  Click
16 complement(2527623..2527757)  hypothetical protein; YpsIP31758_2207  N/A  Click
17 complement(2528070..2528183)  hypothetical protein; YpsIP31758_2208  N/A  Click
18 2528182..2529087  PHAGE_Stx2_c_II: putative antirepressor-like protein; YpsIP31758_2209; phage(gi302393152)  8e-40  Click
19 complement(2529677..2529901)  hypothetical protein; YpsIP31758_2211  N/A  Click
20 complement(2529909..2530559)  PHAGE_Salmon_SPN3UB: hypothetical protein; YpsIP31758_2212; phage(gi423262398)  9e-32  Click
21 2530850..2531173  PHAGE_Salmon_SPN3UB: Arc-like DNA binding domain protein; YpsIP31758_2213; phage(gi423262396)  8e-14  Click
22 2531255..2531710  hypothetical protein; YpsIP31758_2214  N/A  Click
23 complement(2531792..2531905)  PHAGE_Pectob_ZF40: hypothetical protein; YpsIP31758_2215; phage(gi422936695)  5e-06  Click
24 complement(2531956..2532345)  PHAGE_Pectob_ZF40: hypothetical protein; YpsIP31758_2216; phage(gi422936694)  1e-35  Click
25 complement(2532348..2532752)  PHAGE_Pectob_ZF40: hypothetical protein; YpsIP31758_2217; phage(gi422936693)  2e-56  Click
26 complement(2532759..2533916)  PHAGE_Pectob_ZF40: hypothetical protein; YpsIP31758_2218; phage(gi422936692)  6e-169  Click
27 complement(2533900..2534460)  PHAGE_Pectob_ZF40: hypothetical protein; YpsIP31758_2219; phage(gi422936691)  4e-56  Click
28 complement(2534460..2534879)  PHAGE_Pectob_ZF40: hypothetical protein; YpsIP31758_2220; phage(gi422936690)  5e-60  Click
29 complement(2534882..2535538)  PHAGE_Pectob_ZF40: hypothetical protein; YpsIP31758_2221; phage(gi422936685)  9e-51  Click
30 complement(2535538..2536737)  PHAGE_Pectob_ZF40: putative head protein; YpsIP31758_2222; phage(gi422936684)  1e-153  Click
31 complement(2536749..2537624)  PHAGE_Pectob_ZF40: putative head protein; YpsIP31758_2223; phage(gi422936683)  2e-106  Click
32 complement(2537557..2538942)  PHAGE_Pectob_ZF40: putative portal protein; YpsIP31758_2224; phage(gi422936682)  0.0  Click
33 complement(2538945..2540588)  PHAGE_Pectob_ZF40: putative TerL large-subunit terminase; YpsIP31758_2225; phage(gi422936681)  0.0  Click
34 2540715..2540954  bifunctional antitoxin/transcriptional repressor RelB; YpsIP31758_2226  N/A  Click
35 2540944..2541228  addiction module antitoxin; YpsIP31758_2227  N/A  Click
36 complement(2541239..2542255)  PHAGE_Burkho_BcepMigl: terminase small subunit; YpsIP31758_2228; phage(gi431809885)  5e-44  Click
37 complement(2542259..2542519)  hypothetical protein; YpsIP31758_2229  N/A  Click
38 complement(2542522..2543136)  PHAGE_Entero_phiEf11: conserved hypothetical protein; YpsIP31758_2230; phage(gi282598763)  2e-68  Click
39 complement(2543133..2543642)  PHAGE_Psychr_pOW20_A: DNA methylase; YpsIP31758_2231; phage(gi472339820)  5e-38  Click
40 2543824..2543967  hypothetical protein; YpsIP31758_2232  N/A  Click
41 2544101..2544319  hypothetical protein; YpsIP31758_2233  N/A  Click
42 2544364..2544603  hypothetical protein; YpsIP31758_2234  N/A  Click
43 complement(2544820..2544990)  hypothetical protein; YpsIP31758_2235  N/A  Click
44 complement(2545238..2545651)  PHAGE_Salmon_SPN3UB: putative endolysin; YpsIP31758_2236; phage(gi423262444)  2e-31  Click
45 2546146..2546373  prevent-host-death family protein; YpsIP31758_2237  N/A  Click
46 2546397..2546750  RelE/ParE family plasmid stabilization system protein; YpsIP31758_2238  N/A  Click
47 complement(2546909..2547355)  PHAGE_Entero_mEp390: late gene regulator Q; YpsIP31758_2239; phage(gi428782710)  2e-31  Click
48 complement(2547645..2548238)  PHAGE_Pectob_ZF40: hypothetical protein; YpsIP31758_2240; phage(gi422936663)  3e-61  Click
49 complement(2549765..2550505)  hypothetical protein; YpsIP31758_2241  N/A  Click
50 2550607..2550783  hypothetical protein; YpsIP31758_2242  N/A  Click
51 complement(2550939..2551181)  PHAGE_Pectob_ZF40: hypothetical protein; YpsIP31758_2243; phage(gi422936657)  3e-12  Click
52 complement(2551271..2552644)  PHAGE_Salmon_vB_SemP_Emek: DnaB helicase; YpsIP31758_2244; phage(gi399498841)  1e-110  Click
53 complement(2552641..2553684)  PHAGE_Staphy_P954: hypothetical protein; YpsIP31758_2245; phage(gi257136376)  1e-28  Click
54 complement(2553928..2554392)  PHAGE_Pectob_ZF40: putative cII repressor; YpsIP31758_2246; phage(gi422936652)  4e-33  Click
55 complement(2554426..2554632)  PHAGE_Pectob_ZF40: putative cro anti-repressor; YpsIP31758_2247; phage(gi422936651)  8e-20  Click
56 2554676..2555386  PHAGE_Pectob_ZF40: putative cI repressor; YpsIP31758_2248; phage(gi422936650)  3e-91  Click
57 2555727..2555963  PHAGE_Pectob_ZF40: hypothetical protein; YpsIP31758_2249; phage(gi422936643)  3e-11  Click
58 2555953..2556969  PHAGE_Pectob_ZF40: putative integrase; YpsIP31758_2250; phage(gi422936642)  1e-138  Click
59 2557084..2557163  attR    TTTGTTTTACTTAGAATATTTTCCATGGTGCCCGGGGCGGGACTTGAACCCGCACAGCCATAAGCCGAGGGATTTTAAAT  N/A  Click
Region 2, total : 17 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 3304688..3304712  attL    GGGGAACCTTTGCAAGGTAAAGCGC  N/A  Click
2 complement(3304940..3306721)  PHAGE_Burkho_BcepB1A: gp05 H; YpsIP31758_2930; phage(gi48697553)  5e-30  Click
3 complement(3306939..3308798)  PHAGE_Burkho_BcepB1A: gp07; YpsIP31758_2931; phage(gi48697555)  5e-36  Click
4 complement(3308807..3309634)  hypothetical protein; YpsIP31758_2932  N/A  Click
5 complement(3309687..3310886)  PHAGE_Burkho_BcepB1A: gp08 W; YpsIP31758_2933; phage(gi48697556)  6e-88  Click
6 complement(3310870..3311229)  PHAGE_Burkho_BcepB1A: gp09; YpsIP31758_2934; phage(gi48697557)  2e-22  Click
7 complement(3311226..3311903)  PHAGE_Burkho_BcepB1A: gp10 V; YpsIP31758_2935; phage(gi48697558)  3e-44  Click
8 complement(3311885..3312724)  PHAGE_Burkho_BcepB1A: gp11; YpsIP31758_2936; phage(gi48697559)  1e-54  Click
9 complement(3312728..3313030)  PHAGE_Burkho_BcepB1A: gp12; YpsIP31758_2937; phage(gi48697560)  6e-12  Click
10 complement(3313032..3313556)  PHAGE_Burkho_BcepB1A: gp13; YpsIP31758_2938; phage(gi48697561)  2e-26  Click
11 complement(3313556..3314104)  PHAGE_Burkho_BcepB1A: gp14 T; YpsIP31758_2939; phage(gi72257065)  2e-05  Click
12 complement(3314169..3314840)  PHAGE_Burkho_BcepB1A: gp26; YpsIP31758_2940; phage(gi48697515)  8e-41  Click
13 complement(3314833..3315627)  PHAGE_Burkho_BcepB1A: gp27; YpsIP31758_2941; phage(gi48697516)  8e-52  Click
14 complement(3315581..3316189)  PHAGE_Entero_HK629: hypothetical protein; YpsIP31758_2942; phage(gi428782050)  3e-45  Click
15 complement(3316186..3316548)  PHAGE_Entero_HK629: hypothetical protein; YpsIP31758_2943; phage(gi428782051)  1e-38  Click
16 complement(3316570..3317088)  PHAGE_Salmon_ST160: hypothetical protein; YpsIP31758_2944; phage(gi318065920)  1e-64  Click
17 complement(3317622..3317810)  hypothetical protein; YpsIP31758_2945  N/A  Click
18 3317905..3318843  PHAGE_Entero_mEp235: integrase; YpsIP31758_2946; phage(gi428781836)  7e-72  Click
19 3318909..3318933  attR    GGGGAACCTTTGCAAGGTAAAGCGC  N/A  Click