Definition Sinorhizobium medicae WSM419 chromosome, complete genome.
Accession NC_009636
Length 3,781,904
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 39 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1401717..1402007)  PHAGE_Rhizob_3: p033; Smed_1310; phage(gi195546563)  2e-12  Click
2 complement(1402004..1402408)  hypothetical protein; Smed_1311  N/A  Click
3 complement(1402405..1403328)  PHAGE_Rhodov_RS1: hypothetical protein; Smed_1312; phage(gi472342900)  5e-21  Click
4 complement(1403501..1404400)  hypothetical protein; Smed_1313  N/A  Click
5 complement(1404562..1407012)  PHAGE_Rhizob_3: p023; Smed_1314; phage(gi195546554)  1e-124  Click
6 complement(1407085..1409193)  PHAGE_Rhizob_3: putative tail fiber protein H; Smed_1315; phage(gi195546553)  0.0  Click
7 1407275..1407286  attL    ATGCGGCAGGCG  N/A  Click
8 complement(1409194..1409514)  PHAGE_Rhizob_3: p021; Smed_1316; phage(gi195546552)  6e-42  Click
9 1409663..1410268  PHAGE_Halovi_HVTV_1: hypothetical protein; Smed_1317; phage(gi443404713)  9e-14  Click
10 complement(1410293..1410730)  PHAGE_Rhizob_3: p020; Smed_1318; phage(gi195546551)  6e-60  Click
11 complement(1410720..1410899)  PHAGE_Rhizob_3: p019; Smed_1319; phage(gi195546550)  1e-17  Click
12 complement(1410909..1411613)  PHAGE_Rhizob_3: p018; Smed_1320; phage(gi195546549)  5e-127  Click
13 complement(1411610..1413892)  PHAGE_Rhizob_3: p017; Smed_1321; phage(gi195546548)  8e-79  Click
14 1413969..1414256  hypothetical protein; Smed_1322  N/A  Click
15 complement(1414468..1414824)  PHAGE_Rhizob_3: p015; Smed_1323; phage(gi195546546)  3e-12  Click
16 complement(1414824..1415261)  PHAGE_Rhizob_3: p014; Smed_1324; phage(gi195546545)  7e-15  Click
17 complement(1415302..1415718)  PHAGE_Rhizob_3: p012; Smed_1325; phage(gi195546543)  7e-14  Click
18 complement(1415718..1416200)  PHAGE_Rhizob_3: p011; Smed_1326; phage(gi195546542)  3e-23  Click
19 complement(1416197..1416547)  PHAGE_Rhizob_3: p010; Smed_1327; phage(gi195546541)  3e-10  Click
20 complement(1416698..1417108)  PHAGE_Rhizob_3: p009; Smed_1328; phage(gi195546540)  7e-40  Click
21 complement(1417110..1417403)  PHAGE_Mycoba_Faith1: gp22; Smed_1329; phage(gi338827034)  3e-13  Click
22 complement(1417413..1418750)  PHAGE_Invert_6: 261R; Smed_1330; phage(gi15078973)  4e-14  Click
23 complement(1418754..1419116)  PHAGE_Mycoba_Troll4: gp34; Smed_1331; phage(gi206599829)  6e-06  Click
24 complement(1419135..1419707)  PHAGE_Rhizob_3: p008; Smed_1332; phage(gi195546539)  4e-20  Click
25 complement(1419923..1420312)  PHAGE_Synech_S_CBS1: hypothetical protein; Smed_1333; phage(gi356870799)  2e-10  Click
26 complement(1420375..1421649)  PHAGE_Rhizob_3: p005b; Smed_1334; phage(gi195546535)  2e-22  Click
27 complement(1421695..1422426)  PHAGE_Azospi_Cd: phage head maturation protease; Smed_1335; phage(gi168495135)  4e-29  Click
28 complement(1422413..1423666)  PHAGE_Azospi_Cd: portal protein; Smed_1336; phage(gi168495134)  4e-95  Click
29 complement(1423684..1425159)  PHAGE_Entero_HK022: terminase large subunit; Smed_1337; phage(gi9634121)  3e-95  Click
30 complement(1425279..1425749)  PHAGE_Burkho_2: gp1, phage terminase, small subunit, P27 family; Smed_1338; phage(gi134288627)  1e-10  Click
31 complement(1425862..1426203)  PHAGE_Tetras_SI1: hypothetical protein; Smed_1339; phage(gi472342260)  3e-13  Click
32 1426220..1426402  hypothetical protein; Smed_1340  N/A  Click
33 1426425..1426658  hypothetical protein; Smed_1341  N/A  Click
34 complement(1426890..1428050)  hypothetical protein; Smed_1342  N/A  Click
35 complement(1428051..1428452)  hypothetical protein; Smed_1343  N/A  Click
36 complement(1428449..1428763)  hypothetical protein; Smed_1344  N/A  Click
37 complement(1428775..1428954)  hypothetical protein; Smed_1345  N/A  Click
38 complement(1429222..1431603)  PHAGE_Pseudo_vB_Pae_Kakheti25: replicative primase/helicase; Smed_1346; phage(gi388542697)  4e-25  Click
39 complement(1431835..1432020)  hypothetical protein; Smed_1347  N/A  Click
40 1432275..1432286  attR    ATGCGGCAGGCG  N/A  Click
41 complement(1432667..1433842)  PROPHAGE_Mesorh_MAFF303099: phage integrase; Smed_1348; phage(gi13473443)  2e-108  Click
Region 2, total : 19 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1739655..1741526)  PHAGE_Synech_S_CBS1: tail tape measure protein; Smed_1646; phage(gi356870809)  4e-08  Click
2 complement(1741800..1742063)  hypothetical protein; Smed_1647  N/A  Click
3 complement(1742060..1742440)  hypothetical protein; Smed_1648  N/A  Click
4 complement(1742453..1742863)  PHAGE_Rhodob_RcapNL: gene transfer aget (GTA) orfg9-like phage major tail protein; Smed_1649; phage(gi461474972)  2e-14  Click
5 complement(1742957..1743421)  PHAGE_Synech_S_CBS3: hypothetical protein; Smed_1650; phage(gi331028017)  7e-06  Click
6 complement(1743423..1743719)  hypothetical protein; Smed_1651  N/A  Click
7 complement(1743722..1744048)  hypothetical protein; Smed_1652  N/A  Click
8 complement(1744045..1744449)  hypothetical protein; Smed_1653  N/A  Click
9 complement(1744524..1745555)  PHAGE_Burkho_AH2: major capsid protein; Smed_1654; phage(gi399529101)  2e-40  Click
10 complement(1745583..1745939)  hypothetical protein; Smed_1655  N/A  Click
11 complement(1745942..1746484)  PHAGE_Mycoba_Troll4: gp60; Smed_1656; phage(gi206599854)  5e-06  Click
12 complement(1746510..1747415)  PHAGE_Entero_HK630: head maturation protease C; Smed_1657; phage(gi428782792)  2e-42  Click
13 complement(1747412..1749136)  PHAGE_Salmon_SPN19: putative lambda family portal protein B; Smed_1658; phage(gi414090190)  7e-69  Click
14 complement(1749133..1749369)  hypothetical protein; Smed_1659  N/A  Click
15 complement(1749380..1751422)  PHAGE_Synech_S_CBS1: large terminase subunit; Smed_1660; phage(gi356870795)  5e-47  Click
16 complement(1751419..1752060)  hypothetical protein; Smed_1661  N/A  Click
17 complement(1752210..1752956)  PHAGE_Synech_S_CBS1: hypothetical protein; Smed_1662; phage(gi356870837)  7e-08  Click
18 complement(1753185..1753844)  NusG antitermination factor; Smed_1663  N/A  Click
19 complement(1753828..1755081)  PHAGE_Geobac_GBSV1: phage replication protein; Smed_1664; phage(gi115334613)  1e-12  Click
Region 3, total : 88 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1882935..1882946  attL    GAGGCGGCTGGC  N/A  Click
2 complement(1896639..1897745)  PHAGE_Spissi_1: proline-alanine-rich protein; Smed_1815; phage(gi302317587)  9e-05  Click
3 complement(1897745..1898098)  hypothetical protein; Smed_1816  N/A  Click
4 complement(1898095..1899693)  PHAGE_Brucel_Pr: structural protein; Smed_1817; phage(gi418487858)  4e-25  Click
5 complement(1899697..1900158)  hypothetical protein; Smed_1818  N/A  Click
6 complement(1900158..1901774)  PHAGE_Sulfit_pCB2047_C: hypothetical protein; Smed_1819; phage(gi472341750)  6e-91  Click
7 complement(1901771..1902373)  PHAGE_Sulfit_pCB2047_C: hypothetical protein; Smed_1820; phage(gi472341749)  4e-18  Click
8 complement(1902370..1903731)  hypothetical protein; Smed_1821  N/A  Click
9 complement(1903728..1904330)  PHAGE_Sulfit_pCB2047_C: hypothetical protein; Smed_1822; phage(gi472341748)  9e-20  Click
10 complement(1904327..1904650)  PHAGE_Sulfit_pCB2047_C: hypothetical protein; Smed_1823; phage(gi472341747)  5e-24  Click
11 complement(1904647..1905015)  hypothetical protein; Smed_1824  N/A  Click
12 1905096..1905839  hypothetical protein; Smed_1825  N/A  Click
13 1906331..1906777  hypothetical protein; Smed_1826  N/A  Click
14 complement(1906844..1907530)  hypothetical protein; Smed_1827  N/A  Click
15 complement(1907668..1908327)  hypothetical protein; Smed_1828  N/A  Click
16 complement(1908615..1909328)  hypothetical protein; Smed_1829  N/A  Click
17 complement(1909594..1910589)  PHAGE_Sulfit_pCB2047_C: major head protein; Smed_1830; phage(gi472341814)  7e-52  Click
18 complement(1910674..1911642)  PHAGE_Sulfit_pCB2047_C: hypothetical protein; Smed_1831; phage(gi472341813)  3e-49  Click
19 complement(1911767..1912006)  hypothetical protein; Smed_1832  N/A  Click
20 complement(1912116..1912229)  hypothetical protein; Smed_1833  N/A  Click
21 complement(1912483..1912914)  hypothetical protein; Smed_1834  N/A  Click
22 complement(1912911..1913603)  hypothetical protein; Smed_1835  N/A  Click
23 complement(1913678..1914088)  hypothetical protein; Smed_1836  N/A  Click
24 complement(1914448..1915077)  hypothetical protein; Smed_1837  N/A  Click
25 complement(1915074..1917125)  PHAGE_Sulfit_pCB2047_A: portal protein; Smed_1838; phage(gi472341892)  0.0  Click
26 complement(1917125..1918558)  PHAGE_Xylell_Xfas53: TerL; Smed_1839; phage(gi273810450)  2e-171  Click
27 1918701..1919042  glutathione-dependent formaldehyde-activating protein; Smed_1840  N/A  Click
28 complement(1919070..1919225)  hypothetical protein; Smed_1841  N/A  Click
29 1919514..1919966  putative signal peptide protein; Smed_1842  N/A  Click
30 complement(1919969..1920349)  hypothetical protein; Smed_1843  N/A  Click
31 1920524..1920961  hypothetical protein; Smed_1844  N/A  Click
32 complement(1921133..1921708)  hypothetical protein; Smed_1845  N/A  Click
33 complement(1922170..1922970)  PROPHAGE_Escher_CFT073: transposase/IS protein; Smed_1846; phage(gi26248359)  7e-48  Click
34 complement(1922970..1924259)  PROPHAGE_Escher_CFT073: transposase; Smed_1847; phage(gi26248360)  2e-34  Click
35 1924338..1925270  PROPHAGE_Escher_CFT073: transposase; Smed_1848; phage(gi26248352)  6e-09  Click
36 1926154..1926354  putative transmembrane protein; Smed_1849  N/A  Click
37 1926367..1926501  hypothetical protein; Smed_1850  N/A  Click
38 complement(1926722..1927126)  BA14K family protein; Smed_1851  N/A  Click
39 complement(1927331..1927936)  hypothetical protein; Smed_1852  N/A  Click
40 complement(1928076..1928591)  chromosomal replication initiator DnaA domain-containing protein; Smed_1853  N/A  Click
41 1928687..1929412  PHAGE_Rhizob_3: C repressor protein; Smed_1854; phage(gi195546597)  6e-27  Click
42 1929631..1929960  hypothetical protein; Smed_1855  N/A  Click
43 1929960..1930238  putative signal peptide protein; Smed_1856  N/A  Click
44 complement(1930258..1930983)  PHAGE_Staphy_SA11: hypothetical protein; Smed_1857; phage(gi422935622)  1e-10  Click
45 complement(1931196..1932197)  import inner membrane translocase subunit Tim44; Smed_1858  N/A  Click
46 complement(1932386..1933357)  hypothetical protein; Smed_1859  N/A  Click
47 complement(1933544..1933939)  hypothetical protein; Smed_1860  N/A  Click
48 1934795..1935133  PHAGE_Roseop_EE36P1: thioredoxin; Smed_1862; phage(gi237651497)  1e-09  Click
49 1936118..1936855  necrosis-inducing protein; Smed_1863  N/A  Click
50 1937283..1938443  alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Smed_1864  N/A  Click
51 complement(1939190..1939555)  hypothetical protein; Smed_1865  N/A  Click
52 complement(1939781..1940044)  hypothetical protein; Smed_1866  N/A  Click
53 complement(1940044..1941012)  PHAGE_Microc_LMM01: chitinase; Smed_1867; phage(gi117530240)  8e-28  Click
54 1941196..1941414  hypothetical protein; Smed_1868  N/A  Click
55 1941627..1941818  hypothetical protein; Smed_1869  N/A  Click
56 complement(1942098..1942451)  hypothetical protein; Smed_1870  N/A  Click
57 complement(1942438..1942785)  PHAGE_Pseudo_MP42: hypothetical protein; Smed_1871; phage(gi399528628)  5e-17  Click
58 complement(1942785..1943909)  PHAGE_Pseudo_F10: hypothetical protein PPF10_gp025; Smed_1872; phage(gi148912790)  5e-14  Click
59 complement(1943921..1945435)  hypothetical protein; Smed_1873  N/A  Click
60 complement(1945435..1948092)  PHAGE_Salmon_SSU5: putative phage tail protein; Smed_1874; phage(gi410491430)  1e-12  Click
61 complement(1948099..1948503)  PHAGE_Yersin_PY54: hypothetical protein PY54p19; Smed_1875; phage(gi33770528)  1e-05  Click
62 1948572..1948844  hypothetical protein; Smed_1876  N/A  Click
63 complement(1948991..1949581)  hypothetical protein; Smed_1877  N/A  Click
64 complement(1949578..1950231)  hypothetical protein; Smed_1878  N/A  Click
65 1950328..1950687  hypothetical protein; Smed_1879  N/A  Click
66 complement(1950684..1952780)  PHAGE_phiJL001: tail length tape measure protein; Smed_1880; phage(gi62327186)  3e-12  Click
67 1952802..1953236  hypothetical protein; Smed_1881  N/A  Click
68 complement(1953323..1953559)  hypothetical protein; Smed_1882  N/A  Click
69 complement(1953655..1954056)  hypothetical protein; Smed_1883  N/A  Click
70 complement(1954071..1954556)  PHAGE_Salico_CGphi29: hypothetical protein; Smed_1884; phage(gi472340186)  6e-09  Click
71 complement(1954558..1954983)  PHAGE_Shigel_EP23: hypothetical protein; Smed_1885; phage(gi371496283)  9e-07  Click
72 complement(1955190..1955636)  PHAGE_Salico_CGphi29: hypothetical protein; Smed_1886; phage(gi472340179)  1e-12  Click
73 complement(1955636..1956673)  PHAGE_Roseob_1: head morphogenesis protein; Smed_1887; phage(gi331028124)  6e-30  Click
74 complement(1956974..1957339)  PHAGE_Pseudo_MP1412: structural protein; Smed_1888; phage(gi399529026)  7e-08  Click
75 1957419..1957580  hypothetical protein; Smed_1889  N/A  Click
76 complement(1957590..1958084)  PHAGE_Pseudo_vB_Pae_Kakheti25: virion protein; Smed_1890; phage(gi388542673)  8e-06  Click
77 complement(1958115..1958570)  hypothetical protein; Smed_1891  N/A  Click
78 complement(1958584..1959537)  PHAGE_Vibrio_CP_T1: putative major capsid protein; Smed_1892; phage(gi418489228)  3e-39  Click
79 complement(1959552..1959989)  PHAGE_Psychr_pOW20_A: hypothetical protein; Smed_1893; phage(gi472339829)  3e-07  Click
80 complement(1959989..1961131)  PHAGE_Edward_MSW_3: putative head protein; Smed_1894; phage(gi448261038)  1e-43  Click
81 complement(1961527..1962903)  PHAGE_Edward_MSW_3: putative portal protein; Smed_1895; phage(gi448261029)  1e-55  Click
82 complement(1962912..1964243)  PHAGE_Strept_6: terminase large subunit; Smed_1896; phage(gi93007440)  5e-39  Click
83 complement(1964247..1964747)  PHAGE_Salmon_SPN1S: terminase small subunit; Smed_1897; phage(gi374531192)  1e-05  Click
84 1964870..1965241  hypothetical protein; Smed_1898  N/A  Click
85 complement(1965411..1965566)  PHAGE_Rhizob_3: p019; Smed_1899; phage(gi195546550)  2e-05  Click
86 complement(1965953..1966132)  PHAGE_Rhizob_3: p019; Smed_1900; phage(gi195546550)  4e-05  Click
87 complement(1966225..1967202)  hypothetical protein; Smed_1901  N/A  Click
88 complement(1967278..1968174)  hypothetical protein; Smed_1902  N/A  Click
89 1968246..1968257  attR    GAGGCGGCTGGC  N/A  Click
90 1968516..1968767  PHAGE_Ralsto_RSL1: unnamed protein product; Smed_1903; phage(gi189426860)  2e-07  Click