Definition Clostridium beijerinckii NCIMB 8052 chromosome, complete genome.
Accession NC_009617
Length 6,000,632
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 35 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1087484..1087495  attL    AATTGTTTTATT  N/A  Click
2 1087570..1088175  PHAGE_Clostr_phiMMP04: integrase; Cbei_0900; phage(gi414090489)  1e-67  Click
3 1088382..1088561  hypothetical protein; Cbei_0901  N/A  Click
4 1088636..1089316  PHAGE_Strept_SM1: gp14; Cbei_0902; phage(gi32469445)  1e-22  Click
5 1089442..1089747  PHAGE_Clostr_phiMMP04: HNH endonuclease; Cbei_0903; phage(gi414090491)  5e-25  Click
6 1089740..1089922  hypothetical protein; Cbei_0904  N/A  Click
7 1089953..1090390  PHAGE_Clostr_phiMMP04: hypothetical protein; Cbei_0905; phage(gi414090493)  5e-28  Click
8 1090390..1092054  PHAGE_Clostr_phiMMP04: terminase; Cbei_0906; phage(gi414090443)  0.0  Click
9 1092072..1093295  PHAGE_Clostr_phiMMP04: phage portal protein; Cbei_0907; phage(gi414090444)  4e-131  Click
10 1093246..1093839  PHAGE_Clostr_phi3626: putative prohead protease; Cbei_0908; phage(gi20065968)  3e-53  Click
11 1093859..1095061  PHAGE_Geobac_GBSV1: phage major capsid protein; Cbei_0909; phage(gi115334630)  8e-10  Click
12 1095161..1095445  uncharacterized phage protein; Cbei_0910  N/A  Click
13 1095442..1095780  phage head-tail adaptor, putative; Cbei_0911  N/A  Click
14 1095785..1096240  hypothetical protein; Cbei_0912  N/A  Click
15 1096242..1096733  hypothetical protein; Cbei_0913  N/A  Click
16 1096744..1097835  PHAGE_Clostr_phiMMP04: tail sheath; Cbei_0914; phage(gi414090451)  1e-52  Click
17 1097855..1098286  PHAGE_Strept_1: core tail protein; Cbei_0915; phage(gi39653728)  3e-05  Click
18 1098348..1098758  hypothetical protein; Cbei_0916  N/A  Click
19 1099046..1099999  PHAGE_Clostr_phiCD38_2: tail tape measure; Cbei_0917; phage(gi333798123)  2e-62  Click
20 1100203..1101060  PHAGE_Vibrio_kappa: putative tail length determinator; Cbei_0918; phage(gi165970271)  7e-06  Click
21 1101076..1101843  PHAGE_Strept_PH10: lysA; Cbei_0919; phage(gi238821368)  1e-19  Click
22 1101852..1102763  hypothetical protein; Cbei_0920  N/A  Click
23 1102772..1103092  hypothetical protein; Cbei_0921  N/A  Click
24 1103109..1103555  PHAGE_Clostr_phiMMP04: XkdS-related protein; Cbei_0922; phage(gi414090460)  1e-06  Click
25 1103558..1104625  PHAGE_Clostr_phiMMP04: baseplate J-like assembly protein; Cbei_0923; phage(gi414090461)  9e-50  Click
26 1104627..1106450  PHAGE_Bacill_BCD7: putative tail fiber protein; Cbei_0924; phage(gi422936034)  7e-14  Click
27 1106452..1107057  PHAGE_Clostr_phiMMP04: hypothetical protein; Cbei_0925; phage(gi414090462)  1e-17  Click
28 1107072..1108550  PHAGE_Synech_S_CBS4: tail fiber protein; Cbei_0926; phage(gi374531790)  9e-17  Click
29 1108578..1108850  hypothetical protein; Cbei_0927  N/A  Click
30 1108843..1109058  hypothetical protein; Cbei_0928  N/A  Click
31 1109236..1109472  PHAGE_Clostr_phiSM101: hypothetical protein; Cbei_0929; phage(gi110804030)  2e-18  Click
32 1109488..1109883  PHAGE_Clostr_PhiS63: gp20; Cbei_0930; phage(gi388570649)  8e-17  Click
33 1109954..1110742  PHAGE_Clostr_phiSM101: autolytic lysozyme; Cbei_0931; phage(gi110804057)  5e-39  Click
34 complement(1111208..1111570)  PHAGE_Clostr_PhiS63: gp36; Cbei_0932; phage(gi388570662)  2e-05  Click
35 1111658..1112134  ABC transporter substrate-binding protein; Cbei_0933  N/A  Click
36 1112169..1112936  PHAGE_Plankt_PaV_LD: ABC transporter; Cbei_0934; phage(gi371496158)  3e-23  Click
37 1122526..1122537  attR    AATTGTTTTATT  N/A  Click
Region 2, total : 35 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1913872..1915104  PHAGE_Strept_1: transferase; Cbei_1632; phage(gi39653711)  2e-102  Click
2 1915185..1915496  hypothetical protein; Cbei_1633  N/A  Click
3 1915557..1915940  PHAGE_Sinorh_PBC5: hypothetical protein PBC5p48; Cbei_1634; phage(gi18071234)  6e-18  Click
4 1915963..1916745  PHAGE_Clostr_phiCD27: putative terminase small subunit; Cbei_1635; phage(gi209901238)  5e-65  Click
5 1916738..1918150  PHAGE_Clostr_phiCD27: putative terminase B; Cbei_1636; phage(gi209901239)  0.0  Click
6 1918141..1919640  PHAGE_Clostr_phiCD27: putative portal protein; Cbei_1637; phage(gi209901240)  0.0  Click
7 1919633..1920643  PHAGE_Clostr_phiCD27: putative head morphogenesis protein; Cbei_1638; phage(gi209901241)  1e-107  Click
8 1920769..1922163  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp05; Cbei_1639; phage(gi209901242)  4e-155  Click
9 1922182..1922559  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp06; Cbei_1640; phage(gi209901243)  6e-36  Click
10 1922585..1923622  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp07; Cbei_1641; phage(gi209901244)  7e-123  Click
11 1923650..1923982  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp08; Cbei_1642; phage(gi209901245)  6e-36  Click
12 1924201..1924356  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp09; Cbei_1643; phage(gi209901246)  4e-10  Click
13 1924370..1924774  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp10; Cbei_1644; phage(gi209901247)  4e-35  Click
14 1924782..1925612  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp11; Cbei_1645; phage(gi209901248)  1e-72  Click
15 1925618..1925941  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp12; Cbei_1646; phage(gi209901249)  3e-13  Click
16 1925941..1927383  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp13; Cbei_1647; phage(gi209901250)  8e-150  Click
17 1927403..1927819  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp14; Cbei_1648; phage(gi209901251)  3e-24  Click
18 1927891..1928322  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp15; Cbei_1649; phage(gi209901252)  3e-24  Click
19 1928495..1932220  PHAGE_Clostr_phiCD27: putative phage tail tape measure protein; Cbei_1650; phage(gi209901253)  1e-88  Click
20 1932641..1933459  hypothetical protein; Cbei_1651  N/A  Click
21 1933556..1934242  PHAGE_Clostr_phiCD27: putative peptidoglycan-binding LysM; Cbei_1652; phage(gi209901255)  1e-33  Click
22 1934247..1935263  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp19; Cbei_1653; phage(gi209901256)  2e-79  Click
23 1935256..1935603  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp20; Cbei_1654; phage(gi209901257)  5e-17  Click
24 1935596..1936036  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp21; Cbei_1655; phage(gi209901258)  4e-23  Click
25 1936041..1937144  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp22; Cbei_1656; phage(gi209901259)  9e-58  Click
26 1937145..1939004  PHAGE_Bacill_BCD7: putative tail fiber protein; Cbei_1657; phage(gi422936034)  5e-14  Click
27 1939006..1939620  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp23; Cbei_1658; phage(gi209901260)  6e-13  Click
28 1939634..1940779  hypothetical protein; Cbei_1659  N/A  Click
29 1940807..1941079  hypothetical protein; Cbei_1660  N/A  Click
30 1941072..1941287  hypothetical protein; Cbei_1661  N/A  Click
31 1941547..1942719  PHAGE_Pseudo_phiIBB_PF7A: minor capsid protein 10B; Cbei_1662; phage(gi326536940)  4e-11  Click
32 1942761..1943831  PHAGE_Pseudo_phiIBB_PF7A: minor capsid protein 10B; Cbei_1663; phage(gi326536940)  8e-08  Click
33 1943912..1944148  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp32; Cbei_1664; phage(gi209901269)  8e-17  Click
34 1944164..1944604  PHAGE_Clostr_PhiS63: gp20; Cbei_1665; phage(gi388570649)  6e-17  Click
35 1944668..1945453  PHAGE_Clostr_phiSM101: autolytic lysozyme; Cbei_1666; phage(gi110804057)  1e-38  Click
Region 3, total : 30 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 3922919..3923848  PHAGE_Pseudo_OBP: putative endolysin; Cbei_3373; phage(gi371671648)  8e-20  Click
2 complement(3923921..3924604)  PHAGE_Clanis_virus: hoar; Cbei_3374; phage(gi113195407)  9e-06  Click
3 complement(3925033..3925281)  PHAGE_Bacill_phBC6A51: Transcription state regulatory protein abrB; Cbei_3375; phage(gi31415778)  3e-10  Click
4 complement(3925451..3926482)  hypothetical protein; Cbei_3376  N/A  Click
5 complement(3926843..3929953)  PHAGE_Ectoca_1: EsV-1-65; Cbei_3377; phage(gi13242537)  1e-17  Click
6 complement(3930072..3930422)  hypothetical protein; Cbei_3378  N/A  Click
7 complement(3930443..3930937)  YbaK/prolyl-tRNA synthetase associated region; Cbei_3379  N/A  Click
8 complement(3931265..3931927)  PHAGE_Strept_PH10: lysA; Cbei_3380; phage(gi238821368)  5e-08  Click
9 complement(3932335..3932721)  PHAGE_Clostr_PhiS63: gp20; Cbei_3381; phage(gi388570649)  1e-25  Click
10 complement(3932737..3932970)  PHAGE_Clostr_phiSM101: hypothetical protein; Cbei_3382; phage(gi110804030)  1e-16  Click
11 complement(3933223..3934650)  PHAGE_Pseudo_phiIBB_PF7A: minor capsid protein 10B; Cbei_3383; phage(gi326536940)  3e-11  Click
12 complement(3934868..3935041)  PHAGE_Bacill_PM1: hypothetical protein; Cbei_3384; phage(gi472438327)  4e-05  Click
13 complement(3935043..3935327)  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp30; Cbei_3385; phage(gi209901267)  9e-08  Click
14 complement(3935351..3937162)  PHAGE_Cronob_vB_CsaM_GAP32: long tail fiber proximal subunit; Cbei_3386; phage(gi414087138)  3e-06  Click
15 complement(3937175..3937957)  PHAGE_Lactob_JCL1032: structural protein; Cbei_3387; phage(gi418489132)  1e-13  Click
16 complement(3938128..3938781)  PHAGE_Clostr_phiMMP04: tail fiber; Cbei_3388; phage(gi414090463)  1e-38  Click
17 complement(3938783..3939487)  PHAGE_Clostr_phiMMP04: hypothetical protein; Cbei_3389; phage(gi414090462)  4e-25  Click
18 complement(3939480..3940589)  PHAGE_Clostr_phiMMP04: baseplate J-like assembly protein; Cbei_3390; phage(gi414090461)  1e-46  Click
19 complement(3940579..3941019)  PHAGE_Clostr_phiMMP04: XkdS-related protein; Cbei_3391; phage(gi414090460)  1e-20  Click
20 complement(3941012..3941335)  hypothetical protein; Cbei_3392  N/A  Click
21 complement(3941335..3942339)  PHAGE_Clostr_phiMMP04: cell wall hydrolase; Cbei_3393; phage(gi414090458)  6e-16  Click
22 complement(3942336..3942815)  PHAGE_Clostr_phiMMP04: peptidoglycan-binding lysin domain protein; Cbei_3394; phage(gi414090456)  7e-26  Click
23 complement(3942829..3945249)  PHAGE_Strept_SMP: tail tape measure protein; Cbei_3395; phage(gi119953746)  7e-27  Click
24 complement(3945425..3945829)  PHAGE_Clostr_CD119: XkdN protein; Cbei_3396; phage(gi90592652)  9e-22  Click
25 complement(3946233..3946664)  PHAGE_Clostr_phiMMP04: XkdM-related protein; Cbei_3397; phage(gi414090452)  2e-08  Click
26 complement(3946677..3947798)  PHAGE_Clostr_phiMMP04: tail sheath; Cbei_3398; phage(gi414090451)  1e-67  Click
27 complement(3947811..3948245)  hypothetical protein; Cbei_3399  N/A  Click
28 3948737..3949402  PHAGE_Megavi_chiliensis: hypothetical protein; Cbei_3400; phage(gi363540395)  6e-05  Click
29 complement(3949477..3949983)  hypothetical protein; Cbei_3401  N/A  Click
30 complement(3950184..3950738)  PHAGE_Neodip_NPV: hypothetical protein NeseNPV_gp90; Cbei_3402; phage(gi48843624)  9e-15  Click
31 3951312..3953558  PHAGE_Ectoca_1: EsV-1-65; Cbei_3403; phage(gi13242537)  2e-40  Click
Region 4, total : 11 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 4943584..4943595  attL    TTTAATATATCT  N/A  Click
2 4943741..4945036  PROPHAGE_Escher_CFT073: transposase; Cbei_4287; phage(gi26248360)  2e-15  Click
3 4945029..4945781  PHAGE_Strept_7201: ORF5; Cbei_4288; phage(gi9634631)  2e-07  Click
4 complement(4946254..4947063)  PHAGE_Clavib_CMP1: putative SGNH hydrolase; Cbei_4289; phage(gi282598791)  9e-06  Click
5 complement(4947213..4947542)  hypothetical protein; Cbei_4290  N/A  Click
6 complement(4947583..4949160)  PHAGE_Equid__4: envelope glycoprotein J; Cbei_4291; phage(gi9629801)  5e-08  Click
7 complement(4949209..4949589)  flagellar protein FliS; Cbei_4292  N/A  Click
8 complement(4949601..4949888)  hypothetical protein; Cbei_4293  N/A  Click
9 complement(4949941..4950315)  flagellar protein FlaG protein; Cbei_4294  N/A  Click
10 complement(4950359..4950577)  PHAGE_Pseudo_phi297: global regulatory protein; Cbei_4295; phage(gi374531265)  1e-07  Click
11 complement(4950582..4951007)  flagellar assembly protein FliW; Cbei_4296  N/A  Click
12 complement(4951028..4952011)  PHAGE_Salmon_S16: fibritin neck whiskers; Cbei_4297; phage(gi456351238)  7e-06  Click
13 4951632..4951643  attR    TTTAATATATCT  N/A  Click