Definition | Clostridium beijerinckii NCIMB 8052 chromosome, complete genome. |
---|---|
Accession | NC_009617 |
Length | 6,000,632 |
Legend
Hits against Virus and prophage DB | |
Hits against Bacterial DB or GenBank file |
Region 1, total : 35 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1087484..1087495 | attL AATTGTTTTATT | N/A | Click |
2 | 1087570..1088175 | PHAGE_Clostr_phiMMP04: integrase; Cbei_0900; phage(gi414090489) | 1e-67 | Click |
3 | 1088382..1088561 | hypothetical protein; Cbei_0901 | N/A | Click |
4 | 1088636..1089316 | PHAGE_Strept_SM1: gp14; Cbei_0902; phage(gi32469445) | 1e-22 | Click |
5 | 1089442..1089747 | PHAGE_Clostr_phiMMP04: HNH endonuclease; Cbei_0903; phage(gi414090491) | 5e-25 | Click |
6 | 1089740..1089922 | hypothetical protein; Cbei_0904 | N/A | Click |
7 | 1089953..1090390 | PHAGE_Clostr_phiMMP04: hypothetical protein; Cbei_0905; phage(gi414090493) | 5e-28 | Click |
8 | 1090390..1092054 | PHAGE_Clostr_phiMMP04: terminase; Cbei_0906; phage(gi414090443) | 0.0 | Click |
9 | 1092072..1093295 | PHAGE_Clostr_phiMMP04: phage portal protein; Cbei_0907; phage(gi414090444) | 4e-131 | Click |
10 | 1093246..1093839 | PHAGE_Clostr_phi3626: putative prohead protease; Cbei_0908; phage(gi20065968) | 3e-53 | Click |
11 | 1093859..1095061 | PHAGE_Geobac_GBSV1: phage major capsid protein; Cbei_0909; phage(gi115334630) | 8e-10 | Click |
12 | 1095161..1095445 | uncharacterized phage protein; Cbei_0910 | N/A | Click |
13 | 1095442..1095780 | phage head-tail adaptor, putative; Cbei_0911 | N/A | Click |
14 | 1095785..1096240 | hypothetical protein; Cbei_0912 | N/A | Click |
15 | 1096242..1096733 | hypothetical protein; Cbei_0913 | N/A | Click |
16 | 1096744..1097835 | PHAGE_Clostr_phiMMP04: tail sheath; Cbei_0914; phage(gi414090451) | 1e-52 | Click |
17 | 1097855..1098286 | PHAGE_Strept_1: core tail protein; Cbei_0915; phage(gi39653728) | 3e-05 | Click |
18 | 1098348..1098758 | hypothetical protein; Cbei_0916 | N/A | Click |
19 | 1099046..1099999 | PHAGE_Clostr_phiCD38_2: tail tape measure; Cbei_0917; phage(gi333798123) | 2e-62 | Click |
20 | 1100203..1101060 | PHAGE_Vibrio_kappa: putative tail length determinator; Cbei_0918; phage(gi165970271) | 7e-06 | Click |
21 | 1101076..1101843 | PHAGE_Strept_PH10: lysA; Cbei_0919; phage(gi238821368) | 1e-19 | Click |
22 | 1101852..1102763 | hypothetical protein; Cbei_0920 | N/A | Click |
23 | 1102772..1103092 | hypothetical protein; Cbei_0921 | N/A | Click |
24 | 1103109..1103555 | PHAGE_Clostr_phiMMP04: XkdS-related protein; Cbei_0922; phage(gi414090460) | 1e-06 | Click |
25 | 1103558..1104625 | PHAGE_Clostr_phiMMP04: baseplate J-like assembly protein; Cbei_0923; phage(gi414090461) | 9e-50 | Click |
26 | 1104627..1106450 | PHAGE_Bacill_BCD7: putative tail fiber protein; Cbei_0924; phage(gi422936034) | 7e-14 | Click |
27 | 1106452..1107057 | PHAGE_Clostr_phiMMP04: hypothetical protein; Cbei_0925; phage(gi414090462) | 1e-17 | Click |
28 | 1107072..1108550 | PHAGE_Synech_S_CBS4: tail fiber protein; Cbei_0926; phage(gi374531790) | 9e-17 | Click |
29 | 1108578..1108850 | hypothetical protein; Cbei_0927 | N/A | Click |
30 | 1108843..1109058 | hypothetical protein; Cbei_0928 | N/A | Click |
31 | 1109236..1109472 | PHAGE_Clostr_phiSM101: hypothetical protein; Cbei_0929; phage(gi110804030) | 2e-18 | Click |
32 | 1109488..1109883 | PHAGE_Clostr_PhiS63: gp20; Cbei_0930; phage(gi388570649) | 8e-17 | Click |
33 | 1109954..1110742 | PHAGE_Clostr_phiSM101: autolytic lysozyme; Cbei_0931; phage(gi110804057) | 5e-39 | Click |
34 | complement(1111208..1111570) | PHAGE_Clostr_PhiS63: gp36; Cbei_0932; phage(gi388570662) | 2e-05 | Click |
35 | 1111658..1112134 | ABC transporter substrate-binding protein; Cbei_0933 | N/A | Click |
36 | 1112169..1112936 | PHAGE_Plankt_PaV_LD: ABC transporter; Cbei_0934; phage(gi371496158) | 3e-23 | Click |
37 | 1122526..1122537 | attR AATTGTTTTATT | N/A | Click |
Region 2, total : 35 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1913872..1915104 | PHAGE_Strept_1: transferase; Cbei_1632; phage(gi39653711) | 2e-102 | Click |
2 | 1915185..1915496 | hypothetical protein; Cbei_1633 | N/A | Click |
3 | 1915557..1915940 | PHAGE_Sinorh_PBC5: hypothetical protein PBC5p48; Cbei_1634; phage(gi18071234) | 6e-18 | Click |
4 | 1915963..1916745 | PHAGE_Clostr_phiCD27: putative terminase small subunit; Cbei_1635; phage(gi209901238) | 5e-65 | Click |
5 | 1916738..1918150 | PHAGE_Clostr_phiCD27: putative terminase B; Cbei_1636; phage(gi209901239) | 0.0 | Click |
6 | 1918141..1919640 | PHAGE_Clostr_phiCD27: putative portal protein; Cbei_1637; phage(gi209901240) | 0.0 | Click |
7 | 1919633..1920643 | PHAGE_Clostr_phiCD27: putative head morphogenesis protein; Cbei_1638; phage(gi209901241) | 1e-107 | Click |
8 | 1920769..1922163 | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp05; Cbei_1639; phage(gi209901242) | 4e-155 | Click |
9 | 1922182..1922559 | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp06; Cbei_1640; phage(gi209901243) | 6e-36 | Click |
10 | 1922585..1923622 | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp07; Cbei_1641; phage(gi209901244) | 7e-123 | Click |
11 | 1923650..1923982 | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp08; Cbei_1642; phage(gi209901245) | 6e-36 | Click |
12 | 1924201..1924356 | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp09; Cbei_1643; phage(gi209901246) | 4e-10 | Click |
13 | 1924370..1924774 | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp10; Cbei_1644; phage(gi209901247) | 4e-35 | Click |
14 | 1924782..1925612 | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp11; Cbei_1645; phage(gi209901248) | 1e-72 | Click |
15 | 1925618..1925941 | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp12; Cbei_1646; phage(gi209901249) | 3e-13 | Click |
16 | 1925941..1927383 | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp13; Cbei_1647; phage(gi209901250) | 8e-150 | Click |
17 | 1927403..1927819 | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp14; Cbei_1648; phage(gi209901251) | 3e-24 | Click |
18 | 1927891..1928322 | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp15; Cbei_1649; phage(gi209901252) | 3e-24 | Click |
19 | 1928495..1932220 | PHAGE_Clostr_phiCD27: putative phage tail tape measure protein; Cbei_1650; phage(gi209901253) | 1e-88 | Click |
20 | 1932641..1933459 | hypothetical protein; Cbei_1651 | N/A | Click |
21 | 1933556..1934242 | PHAGE_Clostr_phiCD27: putative peptidoglycan-binding LysM; Cbei_1652; phage(gi209901255) | 1e-33 | Click |
22 | 1934247..1935263 | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp19; Cbei_1653; phage(gi209901256) | 2e-79 | Click |
23 | 1935256..1935603 | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp20; Cbei_1654; phage(gi209901257) | 5e-17 | Click |
24 | 1935596..1936036 | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp21; Cbei_1655; phage(gi209901258) | 4e-23 | Click |
25 | 1936041..1937144 | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp22; Cbei_1656; phage(gi209901259) | 9e-58 | Click |
26 | 1937145..1939004 | PHAGE_Bacill_BCD7: putative tail fiber protein; Cbei_1657; phage(gi422936034) | 5e-14 | Click |
27 | 1939006..1939620 | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp23; Cbei_1658; phage(gi209901260) | 6e-13 | Click |
28 | 1939634..1940779 | hypothetical protein; Cbei_1659 | N/A | Click |
29 | 1940807..1941079 | hypothetical protein; Cbei_1660 | N/A | Click |
30 | 1941072..1941287 | hypothetical protein; Cbei_1661 | N/A | Click |
31 | 1941547..1942719 | PHAGE_Pseudo_phiIBB_PF7A: minor capsid protein 10B; Cbei_1662; phage(gi326536940) | 4e-11 | Click |
32 | 1942761..1943831 | PHAGE_Pseudo_phiIBB_PF7A: minor capsid protein 10B; Cbei_1663; phage(gi326536940) | 8e-08 | Click |
33 | 1943912..1944148 | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp32; Cbei_1664; phage(gi209901269) | 8e-17 | Click |
34 | 1944164..1944604 | PHAGE_Clostr_PhiS63: gp20; Cbei_1665; phage(gi388570649) | 6e-17 | Click |
35 | 1944668..1945453 | PHAGE_Clostr_phiSM101: autolytic lysozyme; Cbei_1666; phage(gi110804057) | 1e-38 | Click |
Region 3, total : 30 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 3922919..3923848 | PHAGE_Pseudo_OBP: putative endolysin; Cbei_3373; phage(gi371671648) | 8e-20 | Click |
2 | complement(3923921..3924604) | PHAGE_Clanis_virus: hoar; Cbei_3374; phage(gi113195407) | 9e-06 | Click |
3 | complement(3925033..3925281) | PHAGE_Bacill_phBC6A51: Transcription state regulatory protein abrB; Cbei_3375; phage(gi31415778) | 3e-10 | Click |
4 | complement(3925451..3926482) | hypothetical protein; Cbei_3376 | N/A | Click |
5 | complement(3926843..3929953) | PHAGE_Ectoca_1: EsV-1-65; Cbei_3377; phage(gi13242537) | 1e-17 | Click |
6 | complement(3930072..3930422) | hypothetical protein; Cbei_3378 | N/A | Click |
7 | complement(3930443..3930937) | YbaK/prolyl-tRNA synthetase associated region; Cbei_3379 | N/A | Click |
8 | complement(3931265..3931927) | PHAGE_Strept_PH10: lysA; Cbei_3380; phage(gi238821368) | 5e-08 | Click |
9 | complement(3932335..3932721) | PHAGE_Clostr_PhiS63: gp20; Cbei_3381; phage(gi388570649) | 1e-25 | Click |
10 | complement(3932737..3932970) | PHAGE_Clostr_phiSM101: hypothetical protein; Cbei_3382; phage(gi110804030) | 1e-16 | Click |
11 | complement(3933223..3934650) | PHAGE_Pseudo_phiIBB_PF7A: minor capsid protein 10B; Cbei_3383; phage(gi326536940) | 3e-11 | Click |
12 | complement(3934868..3935041) | PHAGE_Bacill_PM1: hypothetical protein; Cbei_3384; phage(gi472438327) | 4e-05 | Click |
13 | complement(3935043..3935327) | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp30; Cbei_3385; phage(gi209901267) | 9e-08 | Click |
14 | complement(3935351..3937162) | PHAGE_Cronob_vB_CsaM_GAP32: long tail fiber proximal subunit; Cbei_3386; phage(gi414087138) | 3e-06 | Click |
15 | complement(3937175..3937957) | PHAGE_Lactob_JCL1032: structural protein; Cbei_3387; phage(gi418489132) | 1e-13 | Click |
16 | complement(3938128..3938781) | PHAGE_Clostr_phiMMP04: tail fiber; Cbei_3388; phage(gi414090463) | 1e-38 | Click |
17 | complement(3938783..3939487) | PHAGE_Clostr_phiMMP04: hypothetical protein; Cbei_3389; phage(gi414090462) | 4e-25 | Click |
18 | complement(3939480..3940589) | PHAGE_Clostr_phiMMP04: baseplate J-like assembly protein; Cbei_3390; phage(gi414090461) | 1e-46 | Click |
19 | complement(3940579..3941019) | PHAGE_Clostr_phiMMP04: XkdS-related protein; Cbei_3391; phage(gi414090460) | 1e-20 | Click |
20 | complement(3941012..3941335) | hypothetical protein; Cbei_3392 | N/A | Click |
21 | complement(3941335..3942339) | PHAGE_Clostr_phiMMP04: cell wall hydrolase; Cbei_3393; phage(gi414090458) | 6e-16 | Click |
22 | complement(3942336..3942815) | PHAGE_Clostr_phiMMP04: peptidoglycan-binding lysin domain protein; Cbei_3394; phage(gi414090456) | 7e-26 | Click |
23 | complement(3942829..3945249) | PHAGE_Strept_SMP: tail tape measure protein; Cbei_3395; phage(gi119953746) | 7e-27 | Click |
24 | complement(3945425..3945829) | PHAGE_Clostr_CD119: XkdN protein; Cbei_3396; phage(gi90592652) | 9e-22 | Click |
25 | complement(3946233..3946664) | PHAGE_Clostr_phiMMP04: XkdM-related protein; Cbei_3397; phage(gi414090452) | 2e-08 | Click |
26 | complement(3946677..3947798) | PHAGE_Clostr_phiMMP04: tail sheath; Cbei_3398; phage(gi414090451) | 1e-67 | Click |
27 | complement(3947811..3948245) | hypothetical protein; Cbei_3399 | N/A | Click |
28 | 3948737..3949402 | PHAGE_Megavi_chiliensis: hypothetical protein; Cbei_3400; phage(gi363540395) | 6e-05 | Click |
29 | complement(3949477..3949983) | hypothetical protein; Cbei_3401 | N/A | Click |
30 | complement(3950184..3950738) | PHAGE_Neodip_NPV: hypothetical protein NeseNPV_gp90; Cbei_3402; phage(gi48843624) | 9e-15 | Click |
31 | 3951312..3953558 | PHAGE_Ectoca_1: EsV-1-65; Cbei_3403; phage(gi13242537) | 2e-40 | Click |
Region 4, total : 11 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 4943584..4943595 | attL TTTAATATATCT | N/A | Click |
2 | 4943741..4945036 | PROPHAGE_Escher_CFT073: transposase; Cbei_4287; phage(gi26248360) | 2e-15 | Click |
3 | 4945029..4945781 | PHAGE_Strept_7201: ORF5; Cbei_4288; phage(gi9634631) | 2e-07 | Click |
4 | complement(4946254..4947063) | PHAGE_Clavib_CMP1: putative SGNH hydrolase; Cbei_4289; phage(gi282598791) | 9e-06 | Click |
5 | complement(4947213..4947542) | hypothetical protein; Cbei_4290 | N/A | Click |
6 | complement(4947583..4949160) | PHAGE_Equid__4: envelope glycoprotein J; Cbei_4291; phage(gi9629801) | 5e-08 | Click |
7 | complement(4949209..4949589) | flagellar protein FliS; Cbei_4292 | N/A | Click |
8 | complement(4949601..4949888) | hypothetical protein; Cbei_4293 | N/A | Click |
9 | complement(4949941..4950315) | flagellar protein FlaG protein; Cbei_4294 | N/A | Click |
10 | complement(4950359..4950577) | PHAGE_Pseudo_phi297: global regulatory protein; Cbei_4295; phage(gi374531265) | 1e-07 | Click |
11 | complement(4950582..4951007) | flagellar assembly protein FliW; Cbei_4296 | N/A | Click |
12 | complement(4951028..4952011) | PHAGE_Salmon_S16: fibritin neck whiskers; Cbei_4297; phage(gi456351238) | 7e-06 | Click |
13 | 4951632..4951643 | attR TTTAATATATCT | N/A | Click |