Definition Pseudomonas putida F1 chromosome, complete genome.
Accession NC_009512
Length 5,959,964
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 49 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 3778059..3778075  attL    GTGGAAATTTTCAAGGA  N/A  Click
2 3778241..3779422  PHAGE_Pseudo_F116: integrase; Pput_3353; phage(gi56692927)  2e-80  Click
3 complement(3779408..3779701)  hypothetical protein; Pput_3354  N/A  Click
4 complement(3779698..3779991)  hypothetical protein; Pput_3355  N/A  Click
5 complement(3780065..3780289)  hypothetical protein; Pput_3356  N/A  Click
6 3780536..3781120  hypothetical protein; Pput_3357  N/A  Click
7 3781173..3782039  hypothetical protein; Pput_3358  N/A  Click
8 complement(3782378..3782878)  PHAGE_Salmon_E1: tail protein; Pput_3359; phage(gi170676285)  3e-07  Click
9 complement(3782875..3783324)  PHAGE_Pseudo_D3112: putative structural protein; Pput_3360; phage(gi38229133)  2e-31  Click
10 complement(3783421..3784230)  hypothetical protein; Pput_3361  N/A  Click
11 complement(3784255..3786192)  PHAGE_Vibrio_VvAW1: hypothetical protein; Pput_3362; phage(gi460042928)  3e-27  Click
12 complement(3786248..3789301)  PHAGE_Pseudo_vB_PaeS_PMG1: putative tail protein; Pput_3363; phage(gi374531670)  2e-142  Click
13 complement(3789298..3789675)  PHAGE_Pseudo_PAJU2: hypothetical protein PAJU2_gp21; Pput_3364; phage(gi209552440)  2e-25  Click
14 complement(3789678..3790157)  PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; Pput_3365; phage(gi374531666)  7e-28  Click
15 complement(3790154..3790624)  PHAGE_Pseudo_phi297: hypothetical protein; Pput_3366; phage(gi374531301)  3e-25  Click
16 complement(3790812..3793724)  PHAGE_Pseudo_MP29: putative tail component protein; Pput_3367; phage(gi215480016)  4e-92  Click
17 complement(3793780..3794199)  PHAGE_Escher_KBNP21: hypothetical protein; Pput_3368; phage(gi410491993)  5e-08  Click
18 complement(3794627..3795112)  hypothetical protein; Pput_3369  N/A  Click
19 complement(3795170..3796339)  PHAGE_Acinet_Bphi_B1251: hypothetical protein; Pput_3370; phage(gi423262017)  1e-30  Click
20 complement(3796399..3796806)  PHAGE_Acinet_Bphi_B1251: hypothetical protein; Pput_3371; phage(gi423262013)  8e-15  Click
21 complement(3796803..3797189)  PHAGE_Cronob_phiES15: hypothetical protein; Pput_3372; phage(gi401817600)  1e-13  Click
22 complement(3797192..3797572)  PHAGE_Acinet_Bphi_B1251: hypothetical protein; Pput_3373; phage(gi423262010)  6e-17  Click
23 complement(3797576..3797968)  PHAGE_Acinet_Bphi_B1251: hypothetical protein; Pput_3374; phage(gi423262009)  1e-06  Click
24 complement(3798008..3798640)  hypothetical protein; Pput_3375  N/A  Click
25 complement(3798645..3799613)  PHAGE_Pseudo_vB_Pae_Kakheti25: major capsid protein; Pput_3376; phage(gi388542670)  6e-57  Click
26 complement(3799626..3800336)  PHAGE_Cronob_phiES15: hypothetical protein; Pput_3377; phage(gi401817595)  9e-41  Click
27 complement(3800454..3801500)  PHAGE_Salmon_vB_SenS_Ent1: putative head morphogenesis protein, SPP1 gp7 family; Pput_3378; phage(gi423261851)  3e-35  Click
28 complement(3801490..3802914)  PHAGE_Salmon_vB_SenS_Ent1: putative portal protein; Pput_3379; phage(gi423261849)  7e-66  Click
29 complement(3802923..3804224)  PHAGE_Pseudo_H105/1: phage terminase large subunit; Pput_3380; phage(gi327198525)  3e-108  Click
30 complement(3804211..3804672)  PHAGE_Cronob_ENT47670: hypothetical protein; Pput_3381; phage(gi431810521)  3e-35  Click
31 complement(3804704..3805312)  PHAGE_Cronob_ENT47670: putative transposase; Pput_3382; phage(gi431810514)  1e-76  Click
32 complement(3805620..3806057)  PHAGE_Pseudo_KPP10: hypothetical protein; Pput_3383; phage(gi327198153)  7e-24  Click
33 complement(3806054..3806350)  hypothetical protein; Pput_3384  N/A  Click
34 3806503..3806739  hypothetical protein; Pput_3385  N/A  Click
35 complement(3806746..3807015)  hypothetical protein; Pput_3386  N/A  Click
36 complement(3807015..3807326)  PHAGE_Burkho_BcepC6B: putative holin protein; Pput_3387; phage(gi48697210)  4e-08  Click
37 complement(3807736..3808281)  PHAGE_Pseudo_F10: hypothetical protein PPF10_gp058; Pput_3388; phage(gi148912823)  2e-36  Click
38 complement(3808421..3809023)  PHAGE_Pseudo_PAJU2: putative NinG; Pput_3389; phage(gi209552490)  1e-51  Click
39 complement(3809023..3809421)  PHAGE_Cronob_ENT47670: putative ninB protein; Pput_3390; phage(gi431810524)  4e-27  Click
40 complement(3809612..3809890)  PHAGE_Pseudo_AF: hypothetical protein; Pput_3391; phage(gi431810346)  1e-06  Click
41 complement(3809890..3810285)  hypothetical protein; Pput_3392  N/A  Click
42 complement(3810285..3811046)  PHAGE_Pseudo_PAJU2: putative replication protein P; Pput_3393; phage(gi209552483)  2e-48  Click
43 complement(3811043..3811819)  PHAGE_Escher_HK639: hypothetical protein; Pput_3394; phage(gi356870654)  1e-14  Click
44 complement(3811816..3812565)  PHAGE_Cronob_ENT47670: phage antirepressor protein; Pput_3395; phage(gi431810509)  5e-39  Click
45 complement(3812899..3813090)  PHAGE_Pseudo_PAJU2: hypothetical protein PAJU2_gp61; Pput_3396; phage(gi209552480)  2e-08  Click
46 complement(3813118..3813366)  PHAGE_Aggreg_S1249: phage protein; Pput_3397; phage(gi273809591)  3e-07  Click
47 3813463..3814305  PHAGE_Cronob_ENT47670: putative transcriptional regulator; Pput_3398; phage(gi431810510)  8e-13  Click
48 3814577..3815152  PHAGE_Salmon_vB_SemP_Emek: hypothetical protein; Pput_3399; phage(gi399498806)  9e-08  Click
49 3815143..3815547  hypothetical protein; Pput_3400  N/A  Click
50 complement(3815588..3815914)  PHAGE_Pseudo_F116: hypothetical protein F116p28; Pput_3401; phage(gi56692946)  4e-22  Click
51 3828816..3828832  attR    GTGGAAATTTTCAAGGA  N/A  Click
Region 2, total : 58 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 4600889..4600905  attL    TTCGCGGGTGAACCCGC  N/A  Click
2 complement(4608727..4610664)  PHAGE_Vibrio_VvAW1: hypothetical protein; Pput_4098; phage(gi460042928)  4e-27  Click
3 complement(4610708..4611190)  PHAGE_Pseudo_D3: Orf21; Pput_4099; phage(gi9635613)  2e-23  Click
4 complement(4611202..4614300)  PHAGE_Pseudo_D3: Orf26; Pput_4100; phage(gi9635618)  4e-145  Click
5 complement(4614272..4614691)  PHAGE_Pseudo_D3: Orf25; Pput_4101; phage(gi9635617)  3e-20  Click
6 complement(4615075..4615557)  PHAGE_Pseudo_D3: Orf22; Pput_4102; phage(gi9635614)  2e-33  Click
7 complement(4615554..4617998)  PHAGE_Pseudo_D3: Orf19; Pput_4103; phage(gi9635611)  7e-97  Click
8 complement(4618054..4618404)  PHAGE_Entero_IME08: imm gene product; Pput_4104; phage(gi299779001)  3e-10  Click
9 complement(4618478..4618678)  PHAGE_Pseudo_D3: Orf18; Pput_4105; phage(gi9635610)  1e-09  Click
10 complement(4618702..4619172)  PHAGE_Entero_mEpX2: tail assembly chaperone; Pput_4106; phage(gi428765626)  4e-42  Click
11 complement(4619181..4619915)  PHAGE_Pseudo_D3: Orf15; Pput_4107; phage(gi9635608)  1e-39  Click
12 complement(4619981..4620349)  PHAGE_Pseudo_D3: Orf15; Pput_4108; phage(gi9635607)  3e-39  Click
13 complement(4620346..4620831)  PHAGE_Pseudo_D3: Orf14; Pput_4109; phage(gi9635606)  1e-64  Click
14 complement(4620824..4621168)  PHAGE_Pseudo_PAJU2: putative head-tail adaptor; Pput_4110; phage(gi209552428)  2e-22  Click
15 complement(4621165..4621488)  PHAGE_Pseudo_PAJU2: hypothetical protein PAJU2_gp08; Pput_4111; phage(gi209552427)  1e-19  Click
16 complement(4621485..4622429)  PHAGE_Stx2_c_1717: putative prophage portal protein; Pput_4112; phage(gi209447183)  5e-67  Click
17 complement(4622416..4623783)  PHAGE_Entero_4795: putative portal protein; Pput_4113; phage(gi157166043)  2e-119  Click
18 complement(4623798..4624022)  hypothetical protein; Pput_4114  N/A  Click
19 complement(4624070..4626019)  PHAGE_Entero_4795: putative major head protein/prohead protease; Pput_4115; phage(gi157166041)  4e-169  Click
20 complement(4626076..4627743)  PHAGE_Burkho_Bcep176: gp79; Pput_4116; phage(gi77864705)  0.0  Click
21 complement(4627746..4628243)  PHAGE_Burkho_Bcep176: gp80; Pput_4117; phage(gi77864706)  1e-34  Click
22 complement(4628389..4628694)  PHAGE_Pseudo_D3: hypothetical protein D3p95; Pput_4118; phage(gi55741315)  5e-19  Click
23 complement(4628694..4628933)  PHAGE_Pseudo_PAJU2: hypothetical protein PAJU2_gp77; Pput_4119; phage(gi209552496)  4e-05  Click
24 complement(4628933..4629181)  hypothetical protein; Pput_4120  N/A  Click
25 complement(4629178..4629459)  PHAGE_Pseudo_phi297: hypothetical protein; Pput_4121; phage(gi374531283)  1e-05  Click
26 complement(4629460..4629834)  PHAGE_Pseudo_D3: Orf89; Pput_4122; phage(gi9635673)  1e-28  Click
27 complement(4629994..4630680)  PHAGE_Pseudo_D3: Orf84; Pput_4123; phage(gi9635672)  1e-38  Click
28 complement(4630691..4631008)  hypothetical protein; Pput_4124  N/A  Click
29 complement(4631005..4631172)  hypothetical protein; Pput_4125  N/A  Click
30 complement(4631169..4632467)  PROPHAGE_Escher_MG1655: CP4-57 prophage; integrase; Pput_4126; phage(gi16130540)  5e-15  Click
31 complement(4632464..4632892)  PHAGE_Psychr_pOW20_A: hypothetical protein; Pput_4127; phage(gi472339811)  1e-15  Click
32 complement(4632889..4633185)  PHAGE_Entero_ST64T: Orf-136; Pput_4128; phage(gi24371572)  2e-33  Click
33 complement(4633185..4633979)  PHAGE_Entero_mEpX1: putative replication protein DnaC; Pput_4129; phage(gi428781919)  7e-35  Click
34 complement(4633969..4634826)  PHAGE_Pseudo_D3: Orf73; Pput_4130; phage(gi9635661)  3e-32  Click
35 4635265..4636086  PHAGE_Pseudo_phi297: putative phage repressor; Pput_4131; phage(gi374531272)  5e-55  Click
36 complement(4636132..4636446)  PHAGE_Pseudo_F116: hypothetical protein F116p28; Pput_4132; phage(gi56692946)  1e-21  Click
37 4636853..4637077  hypothetical protein; Pput_4133  N/A  Click
38 4637208..4637591  PHAGE_Pseudo_F10: Conserved hypothetical protein; putative transcriptional regulator, LuxR family; Pput_4134; phage(gi148912803)  3e-22  Click
39 4637611..4637949  hypothetical protein; Pput_4135  N/A  Click
40 4637946..4638443  PHAGE_Xantho_vB_XveM_DIBBI: single-stranded DNA-binding protein; Pput_4136; phage(gi389060431)  5e-51  Click
41 4638446..4638607  hypothetical protein; Pput_4137  N/A  Click
42 4638928..4639533  hypothetical protein; Pput_4138  N/A  Click
43 4639621..4640400  PHAGE_Pseudo_B3: hypothetical protein B3ORF5; Pput_4139; phage(gi56692573)  7e-18  Click
44 4640397..4641272  PHAGE_Riemer_RAP44: hypothetical protein; Pput_4140; phage(gi418489874)  2e-17  Click
45 4641279..4642220  hypothetical protein; Pput_4141  N/A  Click
46 4642217..4642369  hypothetical protein; Pput_4142  N/A  Click
47 4642419..4643213  PHAGE_Pseudo_F116: hypothetical protein F116p05; Pput_4143; phage(gi56692932)  4e-72  Click
48 4643210..4643479  PHAGE_Xantho_vB_XveM_DIBBI: hypothetical protein; Pput_4144; phage(gi389060454)  1e-06  Click
49 4643476..4643757  hypothetical protein; Pput_4145  N/A  Click
50 4643754..4644149  hypothetical protein; Pput_4146  N/A  Click
51 4644146..4644502  PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; Pput_4147; phage(gi428782780)  6e-31  Click
52 4644733..4645125  PHAGE_Vibrio_VvAW1: hypothetical protein; Pput_4148; phage(gi460042924)  3e-20  Click
53 4645107..4645355  hypothetical protein; Pput_4149  N/A  Click
54 4645368..4646348  PHAGE_Pectob_ZF40: putative integrase; Pput_4150; phage(gi422936642)  2e-27  Click
55 complement(4646532..4647257)  zeta toxin family protein; Pput_4151  N/A  Click
56 4647450..4650023  PHAGE_Cafete_BV_PW1: putative DNA mismatch repair protein MutS; Pput_4152; phage(gi310831476)  2e-31  Click
57 4650164..4650487  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; Pput_4153  N/A  Click
58 complement(4651023..4652030)  PHAGE_Synech_S_CBS1: group2 RNA polymerase sigma factor; Pput_4154; phage(gi356870821)  4e-37  Click
59 complement(4652139..4652927)  PHAGE_Clostr_phiZP2: putative lysozyme-peptidase; Pput_4155; phage(gi392972703)  2e-15  Click
60 4659292..4659308  attR    TTCGCGGGTGAACCCGC  N/A  Click