Definition | Pseudomonas putida F1 chromosome, complete genome. |
---|---|
Accession | NC_009512 |
Length | 5,959,964 |
Legend
Hits against Virus and prophage DB | |
Hits against Bacterial DB or GenBank file |
Region 1, total : 49 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 3778059..3778075 | attL GTGGAAATTTTCAAGGA | N/A | Click |
2 | 3778241..3779422 | PHAGE_Pseudo_F116: integrase; Pput_3353; phage(gi56692927) | 2e-80 | Click |
3 | complement(3779408..3779701) | hypothetical protein; Pput_3354 | N/A | Click |
4 | complement(3779698..3779991) | hypothetical protein; Pput_3355 | N/A | Click |
5 | complement(3780065..3780289) | hypothetical protein; Pput_3356 | N/A | Click |
6 | 3780536..3781120 | hypothetical protein; Pput_3357 | N/A | Click |
7 | 3781173..3782039 | hypothetical protein; Pput_3358 | N/A | Click |
8 | complement(3782378..3782878) | PHAGE_Salmon_E1: tail protein; Pput_3359; phage(gi170676285) | 3e-07 | Click |
9 | complement(3782875..3783324) | PHAGE_Pseudo_D3112: putative structural protein; Pput_3360; phage(gi38229133) | 2e-31 | Click |
10 | complement(3783421..3784230) | hypothetical protein; Pput_3361 | N/A | Click |
11 | complement(3784255..3786192) | PHAGE_Vibrio_VvAW1: hypothetical protein; Pput_3362; phage(gi460042928) | 3e-27 | Click |
12 | complement(3786248..3789301) | PHAGE_Pseudo_vB_PaeS_PMG1: putative tail protein; Pput_3363; phage(gi374531670) | 2e-142 | Click |
13 | complement(3789298..3789675) | PHAGE_Pseudo_PAJU2: hypothetical protein PAJU2_gp21; Pput_3364; phage(gi209552440) | 2e-25 | Click |
14 | complement(3789678..3790157) | PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; Pput_3365; phage(gi374531666) | 7e-28 | Click |
15 | complement(3790154..3790624) | PHAGE_Pseudo_phi297: hypothetical protein; Pput_3366; phage(gi374531301) | 3e-25 | Click |
16 | complement(3790812..3793724) | PHAGE_Pseudo_MP29: putative tail component protein; Pput_3367; phage(gi215480016) | 4e-92 | Click |
17 | complement(3793780..3794199) | PHAGE_Escher_KBNP21: hypothetical protein; Pput_3368; phage(gi410491993) | 5e-08 | Click |
18 | complement(3794627..3795112) | hypothetical protein; Pput_3369 | N/A | Click |
19 | complement(3795170..3796339) | PHAGE_Acinet_Bphi_B1251: hypothetical protein; Pput_3370; phage(gi423262017) | 1e-30 | Click |
20 | complement(3796399..3796806) | PHAGE_Acinet_Bphi_B1251: hypothetical protein; Pput_3371; phage(gi423262013) | 8e-15 | Click |
21 | complement(3796803..3797189) | PHAGE_Cronob_phiES15: hypothetical protein; Pput_3372; phage(gi401817600) | 1e-13 | Click |
22 | complement(3797192..3797572) | PHAGE_Acinet_Bphi_B1251: hypothetical protein; Pput_3373; phage(gi423262010) | 6e-17 | Click |
23 | complement(3797576..3797968) | PHAGE_Acinet_Bphi_B1251: hypothetical protein; Pput_3374; phage(gi423262009) | 1e-06 | Click |
24 | complement(3798008..3798640) | hypothetical protein; Pput_3375 | N/A | Click |
25 | complement(3798645..3799613) | PHAGE_Pseudo_vB_Pae_Kakheti25: major capsid protein; Pput_3376; phage(gi388542670) | 6e-57 | Click |
26 | complement(3799626..3800336) | PHAGE_Cronob_phiES15: hypothetical protein; Pput_3377; phage(gi401817595) | 9e-41 | Click |
27 | complement(3800454..3801500) | PHAGE_Salmon_vB_SenS_Ent1: putative head morphogenesis protein, SPP1 gp7 family; Pput_3378; phage(gi423261851) | 3e-35 | Click |
28 | complement(3801490..3802914) | PHAGE_Salmon_vB_SenS_Ent1: putative portal protein; Pput_3379; phage(gi423261849) | 7e-66 | Click |
29 | complement(3802923..3804224) | PHAGE_Pseudo_H105/1: phage terminase large subunit; Pput_3380; phage(gi327198525) | 3e-108 | Click |
30 | complement(3804211..3804672) | PHAGE_Cronob_ENT47670: hypothetical protein; Pput_3381; phage(gi431810521) | 3e-35 | Click |
31 | complement(3804704..3805312) | PHAGE_Cronob_ENT47670: putative transposase; Pput_3382; phage(gi431810514) | 1e-76 | Click |
32 | complement(3805620..3806057) | PHAGE_Pseudo_KPP10: hypothetical protein; Pput_3383; phage(gi327198153) | 7e-24 | Click |
33 | complement(3806054..3806350) | hypothetical protein; Pput_3384 | N/A | Click |
34 | 3806503..3806739 | hypothetical protein; Pput_3385 | N/A | Click |
35 | complement(3806746..3807015) | hypothetical protein; Pput_3386 | N/A | Click |
36 | complement(3807015..3807326) | PHAGE_Burkho_BcepC6B: putative holin protein; Pput_3387; phage(gi48697210) | 4e-08 | Click |
37 | complement(3807736..3808281) | PHAGE_Pseudo_F10: hypothetical protein PPF10_gp058; Pput_3388; phage(gi148912823) | 2e-36 | Click |
38 | complement(3808421..3809023) | PHAGE_Pseudo_PAJU2: putative NinG; Pput_3389; phage(gi209552490) | 1e-51 | Click |
39 | complement(3809023..3809421) | PHAGE_Cronob_ENT47670: putative ninB protein; Pput_3390; phage(gi431810524) | 4e-27 | Click |
40 | complement(3809612..3809890) | PHAGE_Pseudo_AF: hypothetical protein; Pput_3391; phage(gi431810346) | 1e-06 | Click |
41 | complement(3809890..3810285) | hypothetical protein; Pput_3392 | N/A | Click |
42 | complement(3810285..3811046) | PHAGE_Pseudo_PAJU2: putative replication protein P; Pput_3393; phage(gi209552483) | 2e-48 | Click |
43 | complement(3811043..3811819) | PHAGE_Escher_HK639: hypothetical protein; Pput_3394; phage(gi356870654) | 1e-14 | Click |
44 | complement(3811816..3812565) | PHAGE_Cronob_ENT47670: phage antirepressor protein; Pput_3395; phage(gi431810509) | 5e-39 | Click |
45 | complement(3812899..3813090) | PHAGE_Pseudo_PAJU2: hypothetical protein PAJU2_gp61; Pput_3396; phage(gi209552480) | 2e-08 | Click |
46 | complement(3813118..3813366) | PHAGE_Aggreg_S1249: phage protein; Pput_3397; phage(gi273809591) | 3e-07 | Click |
47 | 3813463..3814305 | PHAGE_Cronob_ENT47670: putative transcriptional regulator; Pput_3398; phage(gi431810510) | 8e-13 | Click |
48 | 3814577..3815152 | PHAGE_Salmon_vB_SemP_Emek: hypothetical protein; Pput_3399; phage(gi399498806) | 9e-08 | Click |
49 | 3815143..3815547 | hypothetical protein; Pput_3400 | N/A | Click |
50 | complement(3815588..3815914) | PHAGE_Pseudo_F116: hypothetical protein F116p28; Pput_3401; phage(gi56692946) | 4e-22 | Click |
51 | 3828816..3828832 | attR GTGGAAATTTTCAAGGA | N/A | Click |
Region 2, total : 58 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 4600889..4600905 | attL TTCGCGGGTGAACCCGC | N/A | Click |
2 | complement(4608727..4610664) | PHAGE_Vibrio_VvAW1: hypothetical protein; Pput_4098; phage(gi460042928) | 4e-27 | Click |
3 | complement(4610708..4611190) | PHAGE_Pseudo_D3: Orf21; Pput_4099; phage(gi9635613) | 2e-23 | Click |
4 | complement(4611202..4614300) | PHAGE_Pseudo_D3: Orf26; Pput_4100; phage(gi9635618) | 4e-145 | Click |
5 | complement(4614272..4614691) | PHAGE_Pseudo_D3: Orf25; Pput_4101; phage(gi9635617) | 3e-20 | Click |
6 | complement(4615075..4615557) | PHAGE_Pseudo_D3: Orf22; Pput_4102; phage(gi9635614) | 2e-33 | Click |
7 | complement(4615554..4617998) | PHAGE_Pseudo_D3: Orf19; Pput_4103; phage(gi9635611) | 7e-97 | Click |
8 | complement(4618054..4618404) | PHAGE_Entero_IME08: imm gene product; Pput_4104; phage(gi299779001) | 3e-10 | Click |
9 | complement(4618478..4618678) | PHAGE_Pseudo_D3: Orf18; Pput_4105; phage(gi9635610) | 1e-09 | Click |
10 | complement(4618702..4619172) | PHAGE_Entero_mEpX2: tail assembly chaperone; Pput_4106; phage(gi428765626) | 4e-42 | Click |
11 | complement(4619181..4619915) | PHAGE_Pseudo_D3: Orf15; Pput_4107; phage(gi9635608) | 1e-39 | Click |
12 | complement(4619981..4620349) | PHAGE_Pseudo_D3: Orf15; Pput_4108; phage(gi9635607) | 3e-39 | Click |
13 | complement(4620346..4620831) | PHAGE_Pseudo_D3: Orf14; Pput_4109; phage(gi9635606) | 1e-64 | Click |
14 | complement(4620824..4621168) | PHAGE_Pseudo_PAJU2: putative head-tail adaptor; Pput_4110; phage(gi209552428) | 2e-22 | Click |
15 | complement(4621165..4621488) | PHAGE_Pseudo_PAJU2: hypothetical protein PAJU2_gp08; Pput_4111; phage(gi209552427) | 1e-19 | Click |
16 | complement(4621485..4622429) | PHAGE_Stx2_c_1717: putative prophage portal protein; Pput_4112; phage(gi209447183) | 5e-67 | Click |
17 | complement(4622416..4623783) | PHAGE_Entero_4795: putative portal protein; Pput_4113; phage(gi157166043) | 2e-119 | Click |
18 | complement(4623798..4624022) | hypothetical protein; Pput_4114 | N/A | Click |
19 | complement(4624070..4626019) | PHAGE_Entero_4795: putative major head protein/prohead protease; Pput_4115; phage(gi157166041) | 4e-169 | Click |
20 | complement(4626076..4627743) | PHAGE_Burkho_Bcep176: gp79; Pput_4116; phage(gi77864705) | 0.0 | Click |
21 | complement(4627746..4628243) | PHAGE_Burkho_Bcep176: gp80; Pput_4117; phage(gi77864706) | 1e-34 | Click |
22 | complement(4628389..4628694) | PHAGE_Pseudo_D3: hypothetical protein D3p95; Pput_4118; phage(gi55741315) | 5e-19 | Click |
23 | complement(4628694..4628933) | PHAGE_Pseudo_PAJU2: hypothetical protein PAJU2_gp77; Pput_4119; phage(gi209552496) | 4e-05 | Click |
24 | complement(4628933..4629181) | hypothetical protein; Pput_4120 | N/A | Click |
25 | complement(4629178..4629459) | PHAGE_Pseudo_phi297: hypothetical protein; Pput_4121; phage(gi374531283) | 1e-05 | Click |
26 | complement(4629460..4629834) | PHAGE_Pseudo_D3: Orf89; Pput_4122; phage(gi9635673) | 1e-28 | Click |
27 | complement(4629994..4630680) | PHAGE_Pseudo_D3: Orf84; Pput_4123; phage(gi9635672) | 1e-38 | Click |
28 | complement(4630691..4631008) | hypothetical protein; Pput_4124 | N/A | Click |
29 | complement(4631005..4631172) | hypothetical protein; Pput_4125 | N/A | Click |
30 | complement(4631169..4632467) | PROPHAGE_Escher_MG1655: CP4-57 prophage; integrase; Pput_4126; phage(gi16130540) | 5e-15 | Click |
31 | complement(4632464..4632892) | PHAGE_Psychr_pOW20_A: hypothetical protein; Pput_4127; phage(gi472339811) | 1e-15 | Click |
32 | complement(4632889..4633185) | PHAGE_Entero_ST64T: Orf-136; Pput_4128; phage(gi24371572) | 2e-33 | Click |
33 | complement(4633185..4633979) | PHAGE_Entero_mEpX1: putative replication protein DnaC; Pput_4129; phage(gi428781919) | 7e-35 | Click |
34 | complement(4633969..4634826) | PHAGE_Pseudo_D3: Orf73; Pput_4130; phage(gi9635661) | 3e-32 | Click |
35 | 4635265..4636086 | PHAGE_Pseudo_phi297: putative phage repressor; Pput_4131; phage(gi374531272) | 5e-55 | Click |
36 | complement(4636132..4636446) | PHAGE_Pseudo_F116: hypothetical protein F116p28; Pput_4132; phage(gi56692946) | 1e-21 | Click |
37 | 4636853..4637077 | hypothetical protein; Pput_4133 | N/A | Click |
38 | 4637208..4637591 | PHAGE_Pseudo_F10: Conserved hypothetical protein; putative transcriptional regulator, LuxR family; Pput_4134; phage(gi148912803) | 3e-22 | Click |
39 | 4637611..4637949 | hypothetical protein; Pput_4135 | N/A | Click |
40 | 4637946..4638443 | PHAGE_Xantho_vB_XveM_DIBBI: single-stranded DNA-binding protein; Pput_4136; phage(gi389060431) | 5e-51 | Click |
41 | 4638446..4638607 | hypothetical protein; Pput_4137 | N/A | Click |
42 | 4638928..4639533 | hypothetical protein; Pput_4138 | N/A | Click |
43 | 4639621..4640400 | PHAGE_Pseudo_B3: hypothetical protein B3ORF5; Pput_4139; phage(gi56692573) | 7e-18 | Click |
44 | 4640397..4641272 | PHAGE_Riemer_RAP44: hypothetical protein; Pput_4140; phage(gi418489874) | 2e-17 | Click |
45 | 4641279..4642220 | hypothetical protein; Pput_4141 | N/A | Click |
46 | 4642217..4642369 | hypothetical protein; Pput_4142 | N/A | Click |
47 | 4642419..4643213 | PHAGE_Pseudo_F116: hypothetical protein F116p05; Pput_4143; phage(gi56692932) | 4e-72 | Click |
48 | 4643210..4643479 | PHAGE_Xantho_vB_XveM_DIBBI: hypothetical protein; Pput_4144; phage(gi389060454) | 1e-06 | Click |
49 | 4643476..4643757 | hypothetical protein; Pput_4145 | N/A | Click |
50 | 4643754..4644149 | hypothetical protein; Pput_4146 | N/A | Click |
51 | 4644146..4644502 | PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; Pput_4147; phage(gi428782780) | 6e-31 | Click |
52 | 4644733..4645125 | PHAGE_Vibrio_VvAW1: hypothetical protein; Pput_4148; phage(gi460042924) | 3e-20 | Click |
53 | 4645107..4645355 | hypothetical protein; Pput_4149 | N/A | Click |
54 | 4645368..4646348 | PHAGE_Pectob_ZF40: putative integrase; Pput_4150; phage(gi422936642) | 2e-27 | Click |
55 | complement(4646532..4647257) | zeta toxin family protein; Pput_4151 | N/A | Click |
56 | 4647450..4650023 | PHAGE_Cafete_BV_PW1: putative DNA mismatch repair protein MutS; Pput_4152; phage(gi310831476) | 2e-31 | Click |
57 | 4650164..4650487 | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; Pput_4153 | N/A | Click |
58 | complement(4651023..4652030) | PHAGE_Synech_S_CBS1: group2 RNA polymerase sigma factor; Pput_4154; phage(gi356870821) | 4e-37 | Click |
59 | complement(4652139..4652927) | PHAGE_Clostr_phiZP2: putative lysozyme-peptidase; Pput_4155; phage(gi392972703) | 2e-15 | Click |
60 | 4659292..4659308 | attR TTCGCGGGTGAACCCGC | N/A | Click |