Definition Vibrio cholerae O395 chromosome 1, complete sequence.
Accession NC_009456
Length 1,108,250
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 8 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(561184..561519)  PHAGE_Vibrio_CTX: RstR; VC0395_0505; phage(gi332672299)  2e-08  Click
2 561651..562730  PHAGE_Vibrio_CTX: RstA; VC0395_0506; phage(gi332672300)  0.0  Click
3 562708..563088  PHAGE_Vibrio_CTX: RstB; VC0395_0507; phage(gi332672301)  2e-69  Click
4 563224..563472  PHAGE_Vibrio_CTX: Cep; VC0395_0508; phage(gi332672302)  9e-37  Click
5 563483..564766  PHAGE_Vibrio_CTX: hypothetical protein; VC0395_0509; phage(gi332672303)  0.0  Click
6 564763..565056  PHAGE_Vibrio_CTX: Ace; VC0395_0510; phage(gi332672304)  1e-49  Click
7 565053..566252  PHAGE_Vibrio_CTX: Zot; VC0395_0511; phage(gi332672305)  0.0  Click
8 566372..567148  PHAGE_Vibrio_CTX: CtxA; VC0395_0512; phage(gi332672306)  3e-154  Click
Region 2, total : 53 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 999656..999667  attL    CGTTCATCTTGT  N/A  Click
2 complement(1008329..1010245)  PHAGE_Cronob_vB_CsaM_GAP32: hypothetical protein; VC0395_1028; phage(gi414087446)  7e-06  Click
3 complement(1010369..1011520)  PHAGE_Thermu_26: C5 cytosine-specific DNA methylase; VC0395_1029; phage(gi157265426)  1e-17  Click
4 complement(1011844..1012065)  GMP reductase; VC0395_1030  N/A  Click
5 1012351..1012482  hypothetical protein; VC0395_1031  N/A  Click
6 1012730..1012885  hypothetical protein; VC0395_1033  N/A  Click
7 complement(1012862..1014493)  PHAGE_Vibrio_kappa: hypothetical protein KP45; VC0395_1032; phage(gi165970279)  0.0  Click
8 complement(1014490..1014963)  PHAGE_Vibrio_kappa: hypothetical protein KP44; VC0395_1034; phage(gi165970278)  1e-82  Click
9 complement(1014951..1015844)  PHAGE_Vibrio_kappa: hypothetical protein KP43; VC0395_1035; phage(gi165970277)  1e-160  Click
10 complement(1015847..1016371)  PHAGE_Vibrio_kappa: putative tail fiber assembly protein; VC0395_1036; phage(gi165970276)  2e-89  Click
11 complement(1016371..1018209)  PHAGE_Vibrio_kappa: putative tail fiber protein; VC0395_1037; phage(gi165970275)  0.0  Click
12 complement(1018206..1018865)  PHAGE_Vibrio_kappa: hypothetical protein KP40; VC0395_1038; phage(gi165970274)  1e-127  Click
13 complement(1018862..1020061)  PHAGE_Vibrio_kappa: hypothetical protein KP39; VC0395_1039; phage(gi165970273)  0.0  Click
14 complement(1020058..1020390)  PHAGE_Vibrio_kappa: hypothetical protein KP38; VC0395_1040; phage(gi165970272)  2e-57  Click
15 complement(1020380..1022197)  PHAGE_Vibrio_kappa: putative tail length determinator; VC0395_1041; phage(gi165970271)  0.0  Click
16 complement(1022209..1022343)  PHAGE_Pasteu_F108: hypothetical protein F108p32; VC0395_1042; phage(gi109302928)  2e-06  Click
17 complement(1022394..1022675)  PHAGE_Vibrio_kappa: hypothetical protein KP36; VC0395_1043; phage(gi165970270)  9e-37  Click
18 complement(1022672..1022812)  PHAGE_Vibrio_kappa: hypothetical protein KP36; VC0395_1044; phage(gi165970270)  1e-16  Click
19 complement(1022883..1023179)  PHAGE_Vibrio_kappa: hypothetical protein KP35; VC0395_1045; phage(gi165970269)  3e-47  Click
20 complement(1023199..1023786)  PHAGE_Vibrio_kappa: putative endolysin; VC0395_1046; phage(gi165970268)  7e-78  Click
21 complement(1023773..1024000)  PHAGE_Vibrio_kappa: hypothetical protein KP33; VC0395_1047; phage(gi165970267)  2e-39  Click
22 complement(1023997..1024206)  PHAGE_Vibrio_kappa: putative C4-type zinc-finger protein; VC0395_1048; phage(gi165970266)  2e-36  Click
23 complement(1024221..1024679)  PHAGE_Vibrio_kappa: putative tail tube protein; VC0395_1049; phage(gi165970265)  1e-83  Click
24 complement(1024679..1025788)  PHAGE_Vibrio_kappa: putative tail sheath protein; VC0395_1050; phage(gi165970264)  0.0  Click
25 complement(1025790..1026446)  PHAGE_Vibrio_kappa: putative tail completion protein; VC0395_1051; phage(gi165970262)  4e-09  Click
26 complement(1026443..1026895)  PHAGE_Vibrio_kappa: hypothetical protein KP27; VC0395_1052; phage(gi165970261)  3e-51  Click
27 complement(1026922..1027383)  PHAGE_Vibrio_kappa: putative head completion protein; VC0395_1053; phage(gi165970260)  3e-81  Click
28 complement(1027490..1028206)  PHAGE_Vibrio_kappa: putative terminase endonuclease subunit; VC0395_1054; phage(gi165970259)  6e-127  Click
29 complement(1028210..1029232)  PHAGE_Vibrio_kappa: putative major capsid protein; VC0395_1055; phage(gi165970258)  3e-166  Click
30 complement(1029269..1030168)  PHAGE_Vibrio_kappa: putative capsid scaffolding protein; VC0395_1056; phage(gi165970257)  5e-176  Click
31 1030342..1032159  PHAGE_Vibrio_kappa: putative terminase ATPase subunit; VC0395_1057; phage(gi165970256)  0.0  Click
32 1032156..1033178  PHAGE_Vibrio_kappa: hypothetical pbsx family phage portal protein; VC0395_1059; phage(gi165970255)  0.0  Click
33 complement(1033175..1033852)  PHAGE_Haemop_Aaphi23: hypothetical protein Aaphi23p08; VC0395_1058; phage(gi31544005)  2e-26  Click
34 1034308..1034502  hypothetical protein; VC0395_1060  N/A  Click
35 1034506..1034991  hypothetical protein; VC0395_1061  N/A  Click
36 1035185..1035313  PHAGE_Vibrio_kappa: hypothetical zinc-finger protein; VC0395_1062; phage(gi165970253)  7e-18  Click
37 complement(1035314..1035559)  PHAGE_Vibrio_kappa: hypothetical protein KP18; VC0395_1063; phage(gi165970252)  4e-39  Click
38 1035797..1036135  PHAGE_Vibrio_kappa: hypothetical helix-turn-helix domain protein; VC0395_1064; phage(gi165970251)  1e-55  Click
39 complement(1036209..1036745)  PHAGE_Vibrio_kappa: hypothetical protein KP16; VC0395_1065; phage(gi165970250)  7e-102  Click
40 complement(1036755..1039304)  PHAGE_Vibrio_kappa: putative replication protein; VC0395_1066; phage(gi165970249)  0.0  Click
41 complement(1039313..1039897)  PHAGE_Vibrio_kappa: hypothetical protein KP14; VC0395_1067; phage(gi165970248)  3e-104  Click
42 1039884..1040000  PHAGE_Vibrio_kappa: hypothetical protein KP13; VC0395_1068; phage(gi165970247)  2e-17  Click
43 complement(1040001..1040618)  PHAGE_Vibrio_kappa: putative DNA methyltransferase; VC0395_1069; phage(gi165970246)  9e-119  Click
44 complement(1040615..1040842)  PHAGE_Vibrio_kappa: hypothetical protein KP11; VC0395_1070; phage(gi165970245)  1e-38  Click
45 complement(1041092..1041502)  PHAGE_Vibrio_kappa: hypothetical protein KP9; VC0395_1071; phage(gi165970243)  7e-30  Click
46 complement(1041499..1042032)  PHAGE_Vibrio_kappa: hypothetical protein KP8; VC0395_1072; phage(gi165970242)  2e-90  Click
47 complement(1042114..1042548)  PHAGE_Vibrio_kappa: hypothetical protein KP7; VC0395_1073; phage(gi165970241)  2e-78  Click
48 complement(1042561..1043100)  PHAGE_Vibrio_kappa: putative regulator; VC0395_1074; phage(gi165970240)  2e-94  Click
49 complement(1043211..1043423)  PHAGE_Vibrio_kappa: putative regulator; VC0395_1075; phage(gi165970239)  3e-34  Click
50 1043572..1044219  PHAGE_Vibrio_kappa: putative repressor; VC0395_1076; phage(gi165970238)  3e-88  Click
51 1044245..1045150  PHAGE_Vibrio_kappa: putative NAD-dependent DNA ligase; VC0395_1077; phage(gi165970237)  1e-173  Click
52 1045150..1045563  PHAGE_Vibrio_kappa: Glo; VC0395_1078; phage(gi165970236)  5e-73  Click
53 1045242..1045253  attR    CGTTCATCTTGT  N/A  Click
54 1045563..1046594  PHAGE_Vibrio_kappa: putative integrase; VC0395_1079; phage(gi165970235)  8e-98  Click
55 complement(1046727..1047770)  PHAGE_Staphy_42E: ORF012; VC0395_1080; phage(gi66395520)  3e-41  Click