Definition Yersinia pestis Pestoides F plasmid MT, complete sequence.
Accession NC_009378
Length 137,010
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 72 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 87..1109  PROPHAGE_Escher_CFT073: transposase; YPDSF_4029; phage(gi26248360)  0.0  Click
2 1001..1013  attL    GAAAAAAGAGTAT  N/A  Click
3 1109..1888  PROPHAGE_Escher_CFT073: transposase/IS protein; YPDSF_4030; phage(gi26248359)  1e-142  Click
4 complement(2022..2630)  PHAGE_Entero_HK630: tail fiber assembly protein; YPDSF_4031; phage(gi428782810)  3e-66  Click
5 complement(2932..5820)  PHAGE_Salmon_SSU5: putative phage tail fiber protein; YPDSF_4032; phage(gi410491431)  3e-118  Click
6 complement(5901..6518)  PHAGE_Entero_phiP27: hypothetical protein P27p57; YPDSF_4033; phage(gi18249921)  3e-22  Click
7 complement(6536..11167)  PHAGE_Salmon_SSU5: putative phage tail protein; YPDSF_4034; phage(gi410491430)  0.0  Click
8 complement(11189..11776)  PHAGE_Salmon_SSU5: putative phage tail protein; YPDSF_4035; phage(gi410491429)  1e-105  Click
9 complement(11764..12522)  PHAGE_Salmon_SSU5: putative phage tail protein; YPDSF_4036; phage(gi410491428)  1e-149  Click
10 complement(12554..13252)  PHAGE_Salmon_SSU5: putative minor tail protein L; YPDSF_4037; phage(gi410491427)  3e-138  Click
11 complement(13342..13677)  PHAGE_Salmon_SSU5: putative minor tail protein M; YPDSF_4038; phage(gi410491426)  3e-60  Click
12 complement(13719..18296)  PHAGE_Salmon_SSU5: putative tail tape measure protein; YPDSF_4039; phage(gi410491425)  0.0  Click
13 complement(18304..18537)  PHAGE_Salmon_SSU5: hypothetical protein; YPDSF_4040; phage(gi410491424)  7e-39  Click
14 complement(18654..18971)  PHAGE_Salmon_SSU5: hypothetical protein; YPDSF_4041; phage(gi410491423)  2e-52  Click
15 complement(19031..19777)  PHAGE_Salmon_SSU5: putative Ig-like domain-containing protein; YPDSF_4042; phage(gi410491422)  9e-135  Click
16 complement(19852..20235)  PHAGE_Salmon_SSU5: hypothetical protein; YPDSF_4043; phage(gi410491421)  6e-68  Click
17 complement(20237..20710)  PHAGE_Salmon_SSU5: hypothetical protein; YPDSF_4044; phage(gi410491420)  4e-84  Click
18 complement(20701..21045)  PHAGE_Salmon_SSU5: hypothetical protein; YPDSF_4045; phage(gi410491419)  1e-59  Click
19 complement(21143..21976)  PHAGE_Salmon_SSU5: hypothetical protein; YPDSF_4046; phage(gi410491418)  9e-155  Click
20 complement(21976..22410)  PHAGE_Salmon_SSU5: hypothetical protein; YPDSF_4047; phage(gi410491417)  1e-75  Click
21 complement(22454..23116)  PHAGE_Salmon_SSU5: putative Ig-like domain-containing protein; YPDSF_4048; phage(gi410491416)  6e-114  Click
22 complement(23191..24066)  PHAGE_Salmon_SSU5: putative major capsid protein; YPDSF_4049; phage(gi410491415)  4e-164  Click
23 complement(24093..24989)  PHAGE_Salmon_SSU5: hypothetical protein; YPDSF_4050; phage(gi410491414)  7e-164  Click
24 complement(25012..26601)  PHAGE_Salmon_SSU5: hypothetical protein; YPDSF_4051; phage(gi410491413)  0.0  Click
25 complement(26620..27876)  PHAGE_Salmon_SSU5: putative terminase large subunit; YPDSF_4052; phage(gi410491412)  0.0  Click
26 complement(27879..28520)  PHAGE_Salmon_SSU5: putative DNA-binding protein; YPDSF_4053; phage(gi410491411)  9e-116  Click
27 complement(28716..28982)  PHAGE_Salmon_SSU5: hypothetical protein; YPDSF_4054; phage(gi410491540)  9e-45  Click
28 complement(28992..29882)  PHAGE_Salmon_SSU5: putative ABC transporter ATP-binding protein; YPDSF_4055; phage(gi410491539)  1e-170  Click
29 complement(29888..30142)  PHAGE_Salmon_SSU5: hypothetical protein; YPDSF_4056; phage(gi410491538)  4e-42  Click
30 complement(30135..30773)  PHAGE_Salmon_SSU5: putative ABC transporter ATP-binding protein; YPDSF_4057; phage(gi410491537)  6e-113  Click
31 complement(30770..31438)  PHAGE_Salmon_SSU5: putative ParB-like nuclease domain-containing protein; YPDSF_4058; phage(gi410491536)  8e-118  Click
32 complement(31438..32136)  PHAGE_Salmon_SSU5: putative ParB-like nuclease domain-containing protein; YPDSF_4059; phage(gi410491535)  1e-127  Click
33 32205..33764  PHAGE_Salmon_SSU5: putative helicase; YPDSF_4060; phage(gi410491534)  0.0  Click
34 33767..34045  PHAGE_Salmon_SSU5: hypothetical protein; YPDSF_4061; phage(gi410491533)  1e-44  Click
35 34105..34527  PHAGE_Salmon_SSU5: putative lipoprotein; YPDSF_4062; phage(gi410491532)  4e-65  Click
36 34532..35059  PHAGE_Salmon_SSU5: putative repressor of phase 1 flagellin; YPDSF_4063; phage(gi410491531)  6e-82  Click
37 35383..36033  PHAGE_Salmon_SSU5: hypothetical protein; YPDSF_4064; phage(gi410491530)  5e-118  Click
38 36118..36345  hypothetical protein; YPDSF_4151  N/A  Click
39 36571..37029  PROPHAGE_Salmon_Ty2: transposase; YPDSF_4065; phage(gi29143766)  5e-84  Click
40 complement(37705..38187)  PHAGE_Salmon_SSU5: hypothetical protein; YPDSF_4066; phage(gi410491527)  3e-86  Click
41 complement(38393..38674)  PHAGE_Salmon_SSU5: hypothetical protein; YPDSF_4067; phage(gi410491525)  5e-48  Click
42 complement(38874..39332)  PROPHAGE_Salmon_Ty2: transposase; YPDSF_4068; phage(gi29143766)  3e-85  Click
43 complement(39571..40326)  PHAGE_Salmon_SSU5: putative phosphoribosyl-ATP pyrophosphohydrolase-like domain-containing protein; YPDSF_4069; phage(gi410491490)  2e-137  Click
44 complement(40525..41667)  PHAGE_Salmon_SSU5: putative ribonucleotide-diphosphate reductase, beta subunit; YPDSF_4070; phage(gi410491489)  0.0  Click
45 complement(41775..44090)  PHAGE_Salmon_SSU5: putative ribonucleotide-diphosphate reductase, alpha subunit; YPDSF_4071; phage(gi410491488)  0.0  Click
46 complement(44168..44737)  PHAGE_Salmon_SSU5: putative ribonuclease H-like domain-containing protein; YPDSF_4072; phage(gi410491487)  1e-104  Click
47 complement(44750..45496)  PHAGE_Salmon_SSU5: hypothetical protein; YPDSF_4150; phage(gi410491486)  4e-138  Click
48 complement(45486..47402)  PHAGE_Salmon_SSU5: putative exonuclease subunit 2; YPDSF_4073; phage(gi410491485)  0.0  Click
49 complement(47632..48717)  PHAGE_Salmon_SSU5: putative exonuclease subunit 1; YPDSF_4074; phage(gi410491483)  0.0  Click
50 49133..50155  periplasmic protein; YPDSF_4075  N/A  Click
51 complement(50515..50964)  PHAGE_Salmon_SSU5: hypothetical protein; YPDSF_4076; phage(gi410491480)  3e-82  Click
52 51924..52988  PHAGE_Salmon_SSU5: putative replication protein RepA; YPDSF_4077; phage(gi410491479)  0.0  Click
53 complement(53557..53769)  PHAGE_Salmon_SSU5: putative Cre-associated protein; YPDSF_4078; phage(gi410491478)  4e-35  Click
54 complement(53769..54104)  PHAGE_Salmon_SSU5: hypothetical protein; YPDSF_4079; phage(gi410491477)  5e-54  Click
55 complement(54101..54280)  PHAGE_Salmon_SSU5: hypothetical protein; YPDSF_4152; phage(gi410491476)  3e-22  Click
56 complement(54321..54596)  PHAGE_Salmon_SSU5: hypothetical protein; YPDSF_4080; phage(gi410491475)  3e-47  Click
57 complement(54664..55074)  PHAGE_Salmon_SSU5: hypothetical protein; YPDSF_4081; phage(gi410491474)  2e-76  Click
58 complement(55058..55429)  PHAGE_Salmon_SSU5: putative NinX-like protein; YPDSF_4082; phage(gi410491473)  5e-62  Click
59 complement(55583..56413)  PHAGE_Salmon_SSU5: putative SPFH domain / band 7 protein; YPDSF_4083; phage(gi410491472)  1e-153  Click
60 complement(56417..56617)  PHAGE_Salmon_SSU5: hypothetical protein; YPDSF_4153; phage(gi410491471)  1e-29  Click
61 complement(56708..57784)  PHAGE_Salmon_SSU5: putative RecA-like recombinase; YPDSF_4084; phage(gi410491470)  0.0  Click
62 complement(57787..58053)  PHAGE_Salmon_SSU5: hypothetical protein; YPDSF_4085; phage(gi410491469)  2e-43  Click
63 complement(58053..58997)  PHAGE_Salmon_SSU5: DNA polymerase I; YPDSF_4086; phage(gi410491468)  0.0  Click
64 complement(59058..60086)  PHAGE_Salmon_SSU5: hypothetical protein; YPDSF_4087; phage(gi410491467)  0.0  Click
65 complement(60206..60679)  PHAGE_Salmon_SSU5: hypothetical protein; YPDSF_4088; phage(gi410491466)  3e-75  Click
66 61182..61745  PHAGE_Salmon_SSU5: putative phage transcriptional regulator AlpA-like protein; YPDSF_4089; phage(gi410491464)  4e-67  Click
67 complement(61775..62218)  PHAGE_Salmon_SSU5: hypothetical protein; YPDSF_4090; phage(gi410491463)  7e-75  Click
68 complement(62215..65739)  PHAGE_Salmon_SSU5: DNA polymerase III alpha subunit; YPDSF_4091; phage(gi410491462)  0.0  Click
69 complement(65920..67155)  PHAGE_Salmon_SSU5: putative porphyrin biosynthetic protein; YPDSF_4092; phage(gi410491460)  0.0  Click
70 complement(67252..69618)  PHAGE_Salmon_SSU5: putative porphyrin biosynthetic protein; YPDSF_4093; phage(gi410491459)  0.0  Click
71 complement(69728..69940)  hypothetical protein; YPDSF_4094  N/A  Click
72 70203..70589  hypothetical protein; YPDSF_4096  N/A  Click
73 70500..70512  attR    GAAAAAAGAGTAT  N/A  Click
74 complement(70584..71687)  PHAGE_Salmon_vB_SosS_Oslo: integrase; YPDSF_4095; phage(gi399528791)  1e-21  Click
Region 2, total : 8 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(78089..78394)  PHAGE_Salmon_SSU5: hypothetical protein; YPDSF_4099; phage(gi410491458)  1e-51  Click
2 complement(78540..78755)  PHAGE_Salmon_SSU5: hypothetical protein; YPDSF_4100; phage(gi410491456)  5e-35  Click
3 complement(78915..80237)  PHAGE_Salmon_SSU5: putative DNA ligase; YPDSF_4101; phage(gi410491454)  0.0  Click
4 complement(80272..80748)  PHAGE_Salmon_SSU5: hypothetical protein; YPDSF_4102; phage(gi410491453)  1e-82  Click
5 complement(80830..81624)  PHAGE_Salmon_SSU5: hypothetical protein; YPDSF_4103; phage(gi410491452)  7e-144  Click
6 81877..82599  hypothetical protein; YPDSF_4156  N/A  Click
7 82633..83841  PROPHAGE_Escher_CFT073: transposase; YPDSF_4104; phage(gi26246249)  0.0  Click
8 complement(83962..86781)  PHAGE_Entero_phiFL2A: PblA-like tail protein; YPDSF_4105; phage(gi281416544)  2e-06  Click