Definition Burkholderia vietnamiensis G4 chromosome chromosome 1, complete sequence.
Accession NC_009256
Length 3,652,814
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 46 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1242799..1242810  attL    CGAGGGTGCCGA  N/A  Click
2 1249753..1250790  PHAGE_Mannhe_phiMHaA1: integrase; Bcep1808_1144; phage(gi109289985)  2e-69  Click
3 complement(1250775..1251023)  hypothetical protein; Bcep1808_1145  N/A  Click
4 complement(1251020..1251352)  hypothetical protein; Bcep1808_1146  N/A  Click
5 complement(1251579..1252022)  PHAGE_Burkho_Bcep176: gp49; Bcep1808_1147; phage(gi77864674)  2e-13  Click
6 complement(1252120..1252584)  hypothetical protein; Bcep1808_1148  N/A  Click
7 complement(1252786..1253091)  hypothetical protein; Bcep1808_1149  N/A  Click
8 complement(1253088..1253387)  hypothetical protein; Bcep1808_1150  N/A  Click
9 complement(1253384..1254847)  PHAGE_Burkho_BcepF1: hypothetical protein BcepF1.044; Bcep1808_1151; phage(gi126010978)  2e-48  Click
10 complement(1254844..1255542)  PHAGE_Mycoba_KBG: gp84; Bcep1808_1152; phage(gi192824080)  1e-28  Click
11 complement(1255713..1256765)  PHAGE_Entero_epsilon15: RecT; Bcep1808_1153; phage(gi30387413)  3e-60  Click
12 complement(1257747..1258313)  PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; Bcep1808_1155; phage(gi374531724)  9e-37  Click
13 complement(1258313..1258684)  PHAGE_Burkho_Bcep176: gp39; Bcep1808_1156; phage(gi77864664)  2e-14  Click
14 complement(1258706..1259743)  PHAGE_Entero_ES18: gp53; Bcep1808_1157; phage(gi62362266)  1e-49  Click
15 1259862..1259873  attR    CGAGGGTGCCGA  N/A  Click
16 complement(1260048..1260356)  hypothetical protein; Bcep1808_1158  N/A  Click
17 complement(1260835..1261551)  PHAGE_Pseudo_JBD88a: hypothetical protein; Bcep1808_1159; phage(gi448244687)  4e-23  Click
18 1261575..1261868  PHAGE_Aggreg_S1249: phage protein; Bcep1808_1160; phage(gi273809591)  5e-06  Click
19 1261865..1262188  phage-related transcriptional regulator; Bcep1808_1161  N/A  Click
20 1262360..1263451  PHAGE_Myxoco_Mx8: hypothetical protein Mx8p19; Bcep1808_1162; phage(gi15320589)  2e-07  Click
21 1263448..1264815  PHAGE_Entero_P1: Ban; Bcep1808_1163; phage(gi46401697)  3e-81  Click
22 1264812..1265222  PHAGE_Stx2_c_86: hypothetical protein Stx2-86_gp71; Bcep1808_1164; phage(gi116222064)  3e-09  Click
23 1265194..1265736  PHAGE_Bacill_W.Ph.: gp257; Bcep1808_1165; phage(gi371671317)  2e-22  Click
24 1265736..1266308  PHAGE_Pseudo_PAJU2: putative NinG; Bcep1808_1166; phage(gi209552490)  9e-51  Click
25 1266364..1266735  hypothetical protein; Bcep1808_1167  N/A  Click
26 1266732..1266983  hypothetical protein; Bcep1808_1168  N/A  Click
27 1267371..1267811  PHAGE_Sinorh_PBC5: hypothetical protein PBC5p48; Bcep1808_1169; phage(gi18071234)  2e-26  Click
28 1267808..1269184  PHAGE_Strept_6: terminase large subunit; Bcep1808_1170; phage(gi93007440)  4e-34  Click
29 1269188..1271362  PHAGE_Vibrio_VvAW1: hypothetical protein; Bcep1808_1171; phage(gi460042900)  7e-88  Click
30 1271359..1272093  PHAGE_Vibrio_VvAW1: hypothetical protein; Bcep1808_1172; phage(gi460042899)  5e-06  Click
31 1272272..1273465  PHAGE_Vibrio_VvAW1: P22 coat protein; Bcep1808_1173; phage(gi460042898)  3e-37  Click
32 1273533..1273817  hypothetical protein; Bcep1808_1174  N/A  Click
33 1273821..1274567  PHAGE_Vibrio_VvAW1: hypothetical protein; Bcep1808_1175; phage(gi460042896)  1e-20  Click
34 1274564..1275979  PHAGE_Vibrio_VvAW1: hypothetical protein; Bcep1808_1176; phage(gi460042895)  7e-61  Click
35 1275976..1276524  hypothetical protein; Bcep1808_1177  N/A  Click
36 1276525..1276866  PHAGE_Vibrio_VvAW1: hypothetical protein; Bcep1808_1178; phage(gi460042893)  1e-09  Click
37 1276870..1277157  hypothetical protein; Bcep1808_1179  N/A  Click
38 1277154..1277735  PHAGE_Synech_S_SM2: hypothetical protein; Bcep1808_1180; phage(gi326781907)  6e-05  Click
39 1277732..1278184  GCN5-like N-acetyltransferase; Bcep1808_1181  N/A  Click
40 1278254..1278952  PHAGE_Vibrio_VvAW1: hypothetical protein; Bcep1808_1182; phage(gi460042891)  1e-20  Click
41 1278962..1280458  hypothetical protein; Bcep1808_1183  N/A  Click
42 1280458..1282611  PHAGE_Pseudo_KPP12: putative lytic tail protein; Bcep1808_1184; phage(gi431811119)  3e-21  Click
43 1282793..1285153  PHAGE_Escher_phAPEC8: tail fiber protein; Bcep1808_1185; phage(gi448260439)  5e-26  Click
44 1285181..1285444  hypothetical protein; Bcep1808_1186  N/A  Click
45 complement(1285438..1286493)  PROPHAGE_Escher_MG1655: IS30 transposase; Bcep1808_1187; phage(gi16132105)  2e-54  Click
46 1286547..1287035  PHAGE_Bordet_1: Bbp2; Bcep1808_1188; phage(gi41179364)  9e-48  Click
47 1287037..1287642  PHAGE_Vibrio_VP882: putative phage-related protein; Bcep1808_1189; phage(gi126010912)  1e-15  Click
48 1287645..1288544  PHAGE_Equid_8: envelope glycoprotein J; Bcep1808_1190; phage(gi386522795)  3e-09  Click
Region 2, total : 10 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1365671..1365683  attL    CGCGCACGGAGCC  N/A  Click
2 complement(1368337..1368690)  PHAGE_Pseudo_MP42: hypothetical protein; Bcep1808_1264; phage(gi399528604)  1e-08  Click
3 complement(1368687..1369031)  hypothetical protein; Bcep1808_1265  N/A  Click
4 1369227..1369469  hypothetical protein; Bcep1808_1266  N/A  Click
5 1369607..1370800  PHAGE_Pseudo_JBD88a: hypothetical protein; Bcep1808_1267; phage(gi448244705)  3e-09  Click
6 1370964..1371257  hypothetical protein; Bcep1808_1268  N/A  Click
7 1371308..1372363  PHAGE_Spirop_R8A2B: putative transposase; Bcep1808_1269; phage(gi9626114)  4e-16  Click
8 1372434..1372739  hypothetical protein; Bcep1808_1270  N/A  Click
9 1372736..1373422  PHAGE_Pseudo_JBD30: hypothetical protein; Bcep1808_1271; phage(gi448244621)  8e-28  Click
10 1373490..1374713  PHAGE_Pseudo_Bf7: putative tail fiber protein; Bcep1808_1272; phage(gi374531639)  5e-06  Click
11 1374724..1375140  PHAGE_Burkho_BcepF1: conserved phage protein; Bcep1808_1273; phage(gi126011029)  1e-09  Click
12 1379766..1379778  attR    CGCGCACGGAGCC  N/A  Click
Region 3, total : 47 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1387077..1387517)  PHAGE_Synech_S_CBS4: tail fiber protein; Bcep1808_1285; phage(gi374531791)  3e-07  Click
2 complement(1387537..1388757)  PHAGE_Pseudo_Bf7: putative tail fiber protein; Bcep1808_1286; phage(gi374531639)  1e-05  Click
3 complement(1388760..1389332)  PHAGE_Entero_SfV: tail protein; Bcep1808_1287; phage(gi19548988)  6e-10  Click
4 complement(1389329..1390396)  PHAGE_Haemop_SuMu: baseplate J family protein gp47; Bcep1808_1288; phage(gi418489071)  4e-70  Click
5 complement(1390396..1390746)  PHAGE_Haemop_SuMu: Mu bacteriophage protein gp46; Bcep1808_1289; phage(gi418489070)  1e-24  Click
6 complement(1390813..1391415)  PHAGE_Haemop_SuMu: phage-related baseplate assembly protein gp45; Bcep1808_1290; phage(gi418489069)  3e-38  Click
7 complement(1391412..1392542)  PHAGE_Haemop_SuMu: Mu-like prophage tail protein gpP; Bcep1808_1291; phage(gi418489068)  8e-81  Click
8 complement(1392526..1393836)  PHAGE_Salmon_ST64B: tail/DNA circulation protein; Bcep1808_1292; phage(gi23505461)  1e-13  Click
9 complement(1393838..1396102)  PHAGE_Haemop_SuMu: bacteriophage tail length determination protein; Bcep1808_1293; phage(gi418489066)  1e-109  Click
10 complement(1396236..1396634)  hypothetical protein; Bcep1808_1294  N/A  Click
11 complement(1396631..1397008)  PHAGE_Haemop_SuMu: tail tube protein; Bcep1808_1295; phage(gi418489063)  9e-26  Click
12 complement(1397038..1398459)  PHAGE_Haemop_SuMu: tail sheath protein gpL; Bcep1808_1296; phage(gi418489090)  1e-104  Click
13 complement(1398463..1398690)  PHAGE_Haemop_SuMu: hypothetical protein; Bcep1808_1297; phage(gi418489089)  1e-05  Click
14 complement(1398687..1399355)  PHAGE_Haemop_SuMu: Mu-like prophage protein gp37; Bcep1808_1298; phage(gi418489088)  5e-31  Click
15 complement(1399360..1399773)  PHAGE_Haemop_SuMu: Mu-like prophage protein gp36; Bcep1808_1299; phage(gi418489087)  6e-24  Click
16 complement(1399780..1400313)  hypothetical protein; Bcep1808_1300  N/A  Click
17 complement(1400431..1401324)  PHAGE_Pseudo_MP42: hypothetical protein; Bcep1808_1301; phage(gi399528614)  1e-69  Click
18 complement(1401367..1401777)  PHAGE_Rhodov_RS1: hypothetical protein; Bcep1808_1302; phage(gi472342915)  3e-22  Click
19 complement(1401842..1402948)  PHAGE_Pseudo_MP42: protease(I) and scaffold(Z) protein; Bcep1808_1303; phage(gi399528613)  1e-54  Click
20 complement(1403150..1403737)  PHAGE_Pseudo_MP38: virion morphogenesis protein; Bcep1808_1304; phage(gi215479955)  7e-11  Click
21 complement(1403841..1405154)  PHAGE_Pseudo_D3112: virion morphogenesis protein; Bcep1808_1305; phage(gi38229140)  9e-60  Click
22 complement(1405144..1406733)  PHAGE_Pseudo_MP42: portal protein; Bcep1808_1306; phage(gi399528608)  4e-146  Click
23 complement(1406745..1408532)  PHAGE_Pseudo_JBD5: hypothetical protein; Bcep1808_1307; phage(gi448245015)  0.0  Click
24 complement(1408534..1408731)  hypothetical protein; Bcep1808_1308  N/A  Click
25 complement(1408740..1409240)  PHAGE_Pseudo_MP42: hypothetical protein; Bcep1808_1309; phage(gi399528604)  5e-59  Click
26 complement(1409246..1409452)  PHAGE_Pseudo_MP42: hypothetical protein; Bcep1808_1310; phage(gi399528603)  2e-08  Click
27 complement(1409449..1409721)  PHAGE_Burkho_KL1: hypothetical protein; Bcep1808_1311; phage(gi399528717)  8e-06  Click
28 complement(1409742..1409975)  PHAGE_Stx2_c_I: hypothetical protein Stx2Ip097; Bcep1808_1312; phage(gi20065892)  7e-08  Click
29 complement(1410577..1410822)  hypothetical protein; Bcep1808_1313  N/A  Click
30 complement(1410835..1411371)  PHAGE_Burkho_BcepC6B: putative endolysin protein; Bcep1808_1314; phage(gi48697212)  2e-39  Click
31 complement(1411509..1411943)  PHAGE_Pseudo_MP42: putative integral membrane protein; Bcep1808_1315; phage(gi399528599)  1e-21  Click
32 complement(1411940..1412338)  PHAGE_Pseudo_MP42: hypothetical protein; Bcep1808_1316; phage(gi399528598)  3e-22  Click
33 complement(1412417..1413115)  PHAGE_Pseudo_JBD24: hypothetical protein; Bcep1808_1317; phage(gi448245062)  2e-34  Click
34 complement(1413128..1413388)  PHAGE_Pseudo_MP42: hypothetical protein; Bcep1808_1318; phage(gi399528594)  5e-05  Click
35 complement(1413390..1414007)  PHAGE_Burkho_phiE255: gp36; Bcep1808_1319; phage(gi134288843)  7e-65  Click
36 complement(1414040..1414345)  hypothetical protein; Bcep1808_1320  N/A  Click
37 complement(1414348..1414785)  hypothetical protein; Bcep1808_1321  N/A  Click
38 complement(1414797..1415114)  hypothetical protein; Bcep1808_1322  N/A  Click
39 complement(1415116..1415421)  hypothetical protein; Bcep1808_1323  N/A  Click
40 complement(1415421..1415753)  PHAGE_Pseudo_MP42: hypothetical protein; Bcep1808_1324; phage(gi399528590)  6e-15  Click
41 complement(1415740..1416366)  PHAGE_Pseudo_MP42: hypothetical protein; Bcep1808_1325; phage(gi399528587)  2e-37  Click
42 complement(1416359..1416589)  hypothetical protein; Bcep1808_1326  N/A  Click
43 complement(1416597..1417343)  PHAGE_Pseudo_MP42: DNA transposition protein; Bcep1808_1327; phage(gi399528586)  2e-86  Click
44 complement(1417361..1419541)  PHAGE_Pseudo_MP42: A transposase; Bcep1808_1328; phage(gi399528585)  0.0  Click
45 complement(1419541..1420023)  PHAGE_Burkho_BcepMu: gp13; Bcep1808_1329; phage(gi48696923)  9e-23  Click
46 complement(1420085..1420402)  PHAGE_Haemop_SuMu: Mu-like prophage FluMu DNA-binding protein Ner; Bcep1808_1330; phage(gi418489037)  8e-17  Click
47 1420564..1421328  PHAGE_Pseudo_MP42: c repressor; Bcep1808_1331; phage(gi399528580)  1e-26  Click
Region 4, total : 21 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2715994..2716007  attL    CGCGCGGCCCGGCC  N/A  Click
2 complement(2722877..2723932)  PHAGE_Spirop_R8A2B: putative transposase; Bcep1808_2452; phage(gi9626114)  4e-16  Click
3 2724126..2724770  hypothetical protein; Bcep1808_2453  N/A  Click
4 2724826..2725116  phage transcriptional regulator AlpA; Bcep1808_2454  N/A  Click
5 2725120..2725839  PHAGE_Salmon_vB_SosS_Oslo: hypothetical protein; Bcep1808_2455; phage(gi399528836)  1e-08  Click
6 2725836..2726075  hypothetical protein; Bcep1808_2456  N/A  Click
7 2726226..2726489  hypothetical protein; Bcep1808_2457  N/A  Click
8 2726836..2727135  hypothetical protein; Bcep1808_2458  N/A  Click
9 2727128..2727340  hypothetical protein; Bcep1808_2459  N/A  Click
10 2727333..2727734  hypothetical protein; Bcep1808_2460  N/A  Click
11 2727734..2730127  PHAGE_Salico_CGphi29: hypothetical protein; Bcep1808_2461; phage(gi472340164)  1e-27  Click
12 2730124..2730612  hypothetical protein; Bcep1808_2462  N/A  Click
13 2730737..2731108  hypothetical protein; Bcep1808_2463  N/A  Click
14 2731620..2731868  hypothetical protein; Bcep1808_2464  N/A  Click
15 2731925..2732887  PHAGE_Helico_2: hypothetical protein; Bcep1808_2465; phage(gi370703036)  3e-05  Click
16 2733054..2735612  PHAGE_Cronob_vB_CsaM_GAP32: long tail fiber proximal subunit; Bcep1808_2466; phage(gi414087138)  3e-16  Click
17 2735643..2736542  PHAGE_Klebsi_JD001: putative tail-fiber protein; Bcep1808_2467; phage(gi448245166)  9e-24  Click
18 2737003..2737014  attL    AACCCCAATCCA  N/A  Click
19 2737268..2737344  tRNA  N/A  Click
20 2737776..2738036  PHAGE_Burkho_AH2: excisionase; Bcep1808_2468; phage(gi399529070)  4e-30  Click
21 complement(2738320..2738706)  hypothetical protein; Bcep1808_2469  N/A  Click
22 2738726..2739781  PHAGE_Spirop_R8A2B: putative transposase; Bcep1808_2470; phage(gi9626114)  4e-16  Click
23 complement(2739950..2740522)  PHAGE_Burkho_phiE125: hypothetical protein phiE125p33; Bcep1808_2471; phage(gi17975194)  3e-81  Click
24 complement(2740594..2741787)  PHAGE_Vibrio_11895_B1: hypothetical protein; Bcep1808_2472; phage(gi472340117)  5e-07  Click
25 2743901..2743912  attR    AACCCCAATCCA  N/A  Click
26 2752404..2752417  attR    CGCGCGGCCCGGCC  N/A  Click
Region 5, total : 7 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 3186480..3186494  attL    GCCACGGCATCGCGC  N/A  Click
2 complement(3187036..3187779)  PHAGE_Tricho_2c: hypothetical protein TNAV2c_gp071; Bcep1808_2876; phage(gi116326757)  5e-22  Click
3 complement(3188006..3189187)  acetyl-CoA acetyltransferase; Bcep1808_2877  N/A  Click
4 complement(3189495..3190076)  PHAGE_Entero_mEp460: side tail fiber protein; Bcep1808_2878; phage(gi428782336)  6e-08  Click
5 complement(3190249..3191304)  PHAGE_Spirop_R8A2B: putative transposase; Bcep1808_2879; phage(gi9626114)  4e-16  Click
6 3191564..3192619  PHAGE_Spirop_R8A2B: putative transposase; Bcep1808_2880; phage(gi9626114)  4e-16  Click
7 complement(3192838..3193602)  PHAGE_Natria_PhiCh1: putative plasmid partitioning protein Soj; Bcep1808_2881; phage(gi22091150)  4e-09  Click
8 complement(3193828..3194379)  PHAGE_Burkho_BcepIL02: putative single-stranded DNA binding protein; Bcep1808_2882; phage(gi238801629)  2e-62  Click
9 3201215..3201229  attR    GCCACGGCATCGCGC  N/A  Click
Region 6, total : 30 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(3583105..3584118)  PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; Bcep1808_3236; phage(gi428782731)  6e-83  Click
2 complement(3584205..3584582)  PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; Bcep1808_3237; phage(gi428782730)  2e-05  Click
3 complement(3584610..3585848)  PHAGE_Burkho_phiE125: putative capsid assembly protein/protease; Bcep1808_3238; phage(gi17975166)  1e-50  Click
4 complement(3585845..3587386)  PHAGE_Vibrio_vB_VpaM_MAR: portal protein; Bcep1808_3239; phage(gi428782728)  7e-102  Click
5 complement(3587386..3587619)  hypothetical protein; Bcep1808_3240  N/A  Click
6 complement(3587607..3589583)  PHAGE_Vibrio_vB_VpaM_MAR: terminase large subunit; Bcep1808_3241; phage(gi428782726)  5e-63  Click
7 complement(3589595..3590176)  putative bacteriophage--like protein; Bcep1808_3242  N/A  Click
8 3590334..3590609  hypothetical protein; Bcep1808_3243  N/A  Click
9 3590617..3591189  PHAGE_Pseudo_M6: hypothetical protein ORF049; Bcep1808_3244; phage(gi149408278)  2e-06  Click
10 3591186..3591545  hypothetical protein; Bcep1808_3245  N/A  Click
11 3591529..3591879  hypothetical protein; Bcep1808_3246  N/A  Click
12 3591984..3592247  hypothetical protein; Bcep1808_3247  N/A  Click
13 3592341..3592715  PHAGE_Pseudo_M6: hypothetical protein ORF077; Bcep1808_3248; phage(gi149408306)  1e-05  Click
14 3592777..3592986  hypothetical protein; Bcep1808_3249  N/A  Click
15 3592986..3593264  hypothetical protein; Bcep1808_3250  N/A  Click
16 complement(3593272..3593841)  hypothetical protein; Bcep1808_3251  N/A  Click
17 complement(3593838..3595100)  PHAGE_Psychr_pOW20_A: DNA methylase; Bcep1808_3252; phage(gi472339820)  2e-74  Click
18 complement(3595093..3595542)  PHAGE_Burkho_KS9: endolysin gp23; Bcep1808_3253; phage(gi255033754)  6e-26  Click
19 complement(3595529..3596872)  PHAGE_Psychr_pOW20_A: DNA methylase; Bcep1808_3254; phage(gi472339820)  3e-45  Click
20 complement(3596896..3598554)  PROPHAGE_Pseudo_KT2440: ISPpu13, transposase Orf2; Bcep1808_3255; phage(gi26989833)  6e-152  Click
21 complement(3598577..3598936)  PROPHAGE_Pseudo_KT2440: ISPpu15, transposase Orf1; Bcep1808_3256; phage(gi26990788)  1e-30  Click
22 complement(3598936..3599253)  hypothetical protein; Bcep1808_3257  N/A  Click
23 complement(3599868..3600260)  hypothetical protein; Bcep1808_3258  N/A  Click
24 complement(3600253..3600462)  hypothetical protein; Bcep1808_3259  N/A  Click
25 complement(3600464..3600937)  PHAGE_Mycoba_PG1: gp6; Bcep1808_3260; phage(gi38638409)  1e-05  Click
26 complement(3601080..3603407)  PHAGE_Bacill_phi105: hypothetical protein phi105_42; Bcep1808_3261; phage(gi22855035)  3e-74  Click
27 complement(3603385..3603729)  hypothetical protein; Bcep1808_3262  N/A  Click
28 complement(3603726..3604508)  PHAGE_Burkho_BcepGomr: BcepGomrgp43; Bcep1808_3263; phage(gi146329955)  4e-24  Click
29 complement(3604508..3604954)  hypothetical protein; Bcep1808_3264  N/A  Click
30 complement(3604951..3606633)  PHAGE_Actino_phiAsp2: Pas53; Bcep1808_3265; phage(gi48697454)  2e-42  Click