Definition Shewanella baltica OS155 chromosome, complete genome.
Accession NC_009052
Length 5,127,376
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 53 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1444093..1444104  attL    TTTAATATGATT  N/A  Click
2 1444757..1445821  PROPHAGE_Escher_CFT073: transposase insF; Sbal_1254; phage(gi26250329)  2e-11  Click
3 1445924..1446292  hypothetical protein; Sbal_1255  N/A  Click
4 1446557..1446602  attL    TTGGTGGAGGCGGCGGGACTTGAACCCGCGTCCAGAACACCTACAT  N/A  Click
5 1447185..1448687  integrase catalytic subunit; Sbal_1256  N/A  Click
6 1448677..1449423  PROPHAGE_Escher_CFT073: transposase/IS protein; Sbal_1257; phage(gi26248359)  2e-35  Click
7 1449843..1450343  transposase IS3/IS911 family protein; Sbal_1258  N/A  Click
8 1450349..1451398  PROPHAGE_Escher_CFT073: transposase insF; Sbal_1259; phage(gi26249410)  8e-14  Click
9 1451693..1452034  hypothetical protein; Sbal_1260  N/A  Click
10 1452105..1452545  helix-turn-helix domain-containing protein; Sbal_1261  N/A  Click
11 complement(1452674..1453483)  PHAGE_Staphy_phiN315: hypothetical protein SA1795; Sbal_1262; phage(gi30043973)  3e-05  Click
12 complement(1453480..1454529)  PROPHAGE_Escher_CFT073: transposase insF; Sbal_1263; phage(gi26249410)  8e-14  Click
13 complement(1454535..1455035)  transposase IS3/IS911 family protein; Sbal_1264  N/A  Click
14 complement(1455080..1455577)  PHAGE_Lactoc_1: ORF54; Sbal_1265; phage(gi13786585)  3e-07  Click
15 1455753..1455770  attL    CCAGAATTCAGATAATAA  N/A  Click
16 1455854..1456801  PROPHAGE_Neisse_MC58: IS30 family transposase; Sbal_1266; phage(gi15677611)  2e-67  Click
17 complement(1456755..1457372)  hypothetical protein; Sbal_1267  N/A  Click
18 1457403..1457420  attR    CCAGAATTCAGATAATAA  N/A  Click
19 1457505..1458446  PROPHAGE_Neisse_MC58: IS30 family transposase; Sbal_1268; phage(gi15677611)  6e-60  Click
20 complement(1458482..1459183)  PHAGE_Pasteu_F108: CI; Sbal_1269; phage(gi109302899)  1e-13  Click
21 1459277..1459477  PHAGE_Aeromo_phiO18P: putative cox protein; Sbal_1270; phage(gi148727134)  4e-10  Click
22 1459593..1460159  PHAGE_Aeromo_phiO18P: putative cII protein; Sbal_1271; phage(gi148727135)  7e-19  Click
23 1460403..1460642  hypothetical protein; Sbal_1272  N/A  Click
24 1460617..1460910  hypothetical protein; Sbal_1273  N/A  Click
25 1460907..1461152  PHAGE_Vibrio_VHML: ORF53; Sbal_1274; phage(gi27311221)  4e-06  Click
26 1461149..1461388  hypothetical protein; Sbal_1275  N/A  Click
27 1461385..1461639  hypothetical protein; Sbal_1276  N/A  Click
28 1461639..1463870  PHAGE_Haemop_HP1: replication protein; Sbal_1277; phage(gi9628613)  8e-76  Click
29 complement(1464806..1465054)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_19; Sbal_1278; phage(gi148727148)  4e-18  Click
30 1465624..1465887  prevent-host-death family protein; Sbal_1279  N/A  Click
31 1465898..1466254  hypothetical protein; Sbal_1280  N/A  Click
32 complement(1466279..1467319)  PHAGE_Aeromo_phiO18P: putative portal protein; Sbal_1281; phage(gi148727149)  2e-90  Click
33 complement(1467301..1469109)  PHAGE_Aeromo_phiO18P: putative terminase large subunit; Sbal_1282; phage(gi148727151)  0.0  Click
34 1469313..1470239  PHAGE_Aeromo_phiO18P: putative capsid scaffolding protein; Sbal_1283; phage(gi148727152)  8e-52  Click
35 1470289..1471332  PHAGE_Aeromo_phiO18P: putative major capsid protein; Sbal_1284; phage(gi148727153)  6e-101  Click
36 1471410..1472000  PHAGE_Lactob_1: putative tail fibre protein; Sbal_1285; phage(gi226377752)  2e-05  Click
37 1472294..1472692  PHAGE_Aeromo_phiO18P: putative terminase small subunit; Sbal_1286; phage(gi148727154)  5e-28  Click
38 1472848..1473309  PHAGE_Aeromo_phiO18P: putative head completion protein; Sbal_1287; phage(gi148727155)  4e-07  Click
39 1473306..1473794  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_27; Sbal_1288; phage(gi148727156)  2e-13  Click
40 1473791..1474453  PHAGE_Aeromo_phiO18P: putative tail completion protein; Sbal_1289; phage(gi148727157)  6e-18  Click
41 1474456..1475562  PHAGE_Aeromo_phiO18P: putative tail sheath protein; Sbal_1290; phage(gi148727158)  3e-87  Click
42 1475575..1476024  PHAGE_Aeromo_phiO18P: putative tail tube protein; Sbal_1291; phage(gi148727159)  2e-40  Click
43 1476038..1476241  PHAGE_Acinet_133: conserved hypothetical bacterial protein; Sbal_1292; phage(gi326536256)  8e-07  Click
44 1476243..1476734  PHAGE_Salmon_SPN9CC: phage lysozyme; Sbal_1293; phage(gi389060531)  8e-30  Click
45 1476718..1477275  hypothetical protein; Sbal_1294  N/A  Click
46 1477326..1477616  PHAGE_Burkho_phiE125: putative class II holin; Sbal_1295; phage(gi17975185)  1e-06  Click
47 1477613..1477879  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_36; Sbal_1296; phage(gi148727164)  4e-09  Click
48 1477921..1478067  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_37; Sbal_1297; phage(gi148727165)  4e-08  Click
49 1478082..1479854  PHAGE_Aeromo_phiO18P: putative tail tape measure protein; Sbal_1298; phage(gi148727166)  6e-126  Click
50 1479851..1480183  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_39; Sbal_1299; phage(gi148727167)  2e-15  Click
51 1480183..1481385  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_40; Sbal_1300; phage(gi148727168)  3e-90  Click
52 1481382..1482014  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_41; Sbal_1301; phage(gi148727169)  3e-24  Click
53 1482032..1484338  PHAGE_Aeromo_phiO18P: putative tail fiber protein; Sbal_1302; phage(gi158518662)  7e-40  Click
54 1484339..1484836  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_45; Sbal_1303; phage(gi148727174)  4e-27  Click
55 1484836..1485528  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_46; Sbal_1304; phage(gi148727175)  4e-37  Click
56 1485530..1485706  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_46; Sbal_1305; phage(gi148727175)  8e-06  Click
57 1485734..1486270  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_46; Sbal_1306; phage(gi148727175)  4e-22  Click
58 1486938..1486983  attR    TTGGTGGAGGCGGCGGGACTTGAACCCGCGTCCAGAACACCTACAT  N/A  Click
59 1498087..1498098  attR    TTTAATATGATT  N/A  Click
Region 2, total : 23 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2507887..2507898  attL    AGCCATGGCTTA  N/A  Click
2 complement(2519693..2521792)  PHAGE_Bacill_SPBc2: ABC transporter; Sbal_2175; phage(gi9630145)  4e-55  Click
3 complement(2521847..2522233)  PHAGE_Human__4: EBNA-1; Sbal_2176; phage(gi82503233)  2e-11  Click
4 complement(2522403..2522810)  hypothetical protein; Sbal_2177  N/A  Click
5 complement(2522861..2524102)  secretion protein HlyD family protein; Sbal_2178  N/A  Click
6 2524491..2525408  PHAGE_Entero_HK022: IS903 transposase; Sbal_2179; phage(gi9634149)  4e-92  Click
7 complement(2525571..2526209)  PHAGE_Entero_P1: Cin; Sbal_2180; phage(gi46401653)  8e-08  Click
8 complement(2526395..2527141)  PROPHAGE_Escher_CFT073: transposase/IS protein; Sbal_2181; phage(gi26248359)  2e-35  Click
9 complement(2527131..2527373)  hypothetical protein; Sbal_2182  N/A  Click
10 2527424..2530012  PROPHAGE_Xantho_33913: Tn5041 transposase; Sbal_2183; phage(gi21231545)  1e-31  Click
11 2530181..2530441  hypothetical protein; Sbal_2184  N/A  Click
12 2530434..2530817  PHAGE_Vibrio_CTX: RstB; Sbal_2185; phage(gi332672297)  2e-06  Click
13 2530988..2531227  PHAGE_Vibrio_Vf33: Vpf81; Sbal_2186; phage(gi49248523)  7e-08  Click
14 2531505..2533073  PHAGE_Vibrio_Vf33: Vpf491; Sbal_2187; phage(gi49248525)  2e-07  Click
15 2533075..2533392  PHAGE_Vibrio_Vf33: Vpf104; Sbal_2188; phage(gi49248526)  7e-19  Click
16 2533389..2534534  PHAGE_Vibrio_Vf33: Vpf380; Sbal_2189; phage(gi49248527)  4e-54  Click
17 complement(2534991..2535209)  hypothetical protein; Sbal_2190  N/A  Click
18 complement(2535901..2536083)  RstR-like phage repressor protein; Sbal_2191  N/A  Click
19 2536208..2537860  PHAGE_Entero_Ike: G II protein; Sbal_2192; phage(gi9626233)  3e-67  Click
20 2537860..2538210  hypothetical protein; Sbal_2193  N/A  Click
21 2538477..2538695  hypothetical protein; Sbal_2194  N/A  Click
22 2538831..2540678  PHAGE_Entero_vB_EcoM_VR7: hypothetical protein; Sbal_2195; phage(gi314121758)  6e-42  Click
23 2541106..2542473  PHAGE_Vibrio_VfO4K68: Vpf461; Sbal_2196; phage(gi9635484)  4e-50  Click
24 2543002..2543013  attR    AGCCATGGCTTA  N/A  Click
25 complement(2543022..2544317)  phage integrase family protein; Sbal_2197  N/A  Click
Region 3, total : 42 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 4211201..4212268  PHAGE_Entero_mEp460: integrase; Sbal_3586; phage(gi428782338)  2e-103  Click
2 4212511..4212524  attL    TAATAGCTATTAAT  N/A  Click
3 complement(4212602..4212814)  PHAGE_Stenot_S1: hypothetical protein StPS1_gp22; Sbal_3587; phage(gi213163921)  2e-05  Click
4 complement(4212840..4214600)  PHAGE_Stenot_S1: putative tail protein c; Sbal_3588; phage(gi213163920)  3e-26  Click
5 complement(4214877..4215830)  PHAGE_Stenot_S1: hypothetical protein StPS1_gp20; Sbal_3589; phage(gi213163919)  3e-09  Click
6 complement(4215843..4218341)  PHAGE_Stenot_S1: putative tail protein b; Sbal_3590; phage(gi213163918)  1e-38  Click
7 complement(4218349..4218720)  hypothetical protein; Sbal_3591  N/A  Click
8 complement(4218759..4223039)  PHAGE_Strept_phi3396: putative phage-related tail tape measure protein; Sbal_3592; phage(gi126011107)  2e-44  Click
9 complement(4223132..4223851)  PHAGE_Pseudo_F10: hypothetical protein PPF10_gp010; Sbal_3593; phage(gi148912775)  2e-15  Click
10 complement(4223848..4224273)  hypothetical protein; Sbal_3594  N/A  Click
11 complement(4224307..4224864)  hypothetical protein; Sbal_3595  N/A  Click
12 complement(4224868..4225212)  hypothetical protein; Sbal_3596  N/A  Click
13 complement(4225205..4225528)  PHAGE_Entero_mEp460: hypothetical protein; putative; phage RecA/RadA recombinase; Sbal_3597(gi428782322)  4e-14  Click
14 complement(4225609..4227531)  PHAGE_Entero_mEp460: putative protease/scaffold protein; Sbal_3598; phage(gi428782321)  0.0  Click
15 complement(4227587..4229161)  PHAGE_Entero_mEp460: portal protein; Sbal_3599; phage(gi428782320)  1e-127  Click
16 complement(4229211..4229456)  PHAGE_Entero_mEp460: hypothetical protein; Sbal_3600; phage(gi428782319)  2e-10  Click
17 complement(4229447..4231444)  PHAGE_Pseudo_F10: Putative large subunit (GpA homolog) of DNA packaging dimer; Sbal_3601; phage(gi148912767)  0.0  Click
18 complement(4231419..4231850)  PHAGE_Entero_N15: gp1; Sbal_3602; phage(gi9630465)  7e-29  Click
19 complement(4231906..4232289)  PHAGE_Bacter_2: phage 21-like group II holin; Sbal_3603; phage(gi212499716)  6e-05  Click
20 complement(4232352..4232855)  PHAGE_Burkho_phiE202: gp42, protein LysB; Sbal_3604; phage(gi134288770)  1e-04  Click
21 complement(4232836..4233369)  PHAGE_Xantho_OP1: putative lysozyme; Sbal_3605; phage(gi84662620)  4e-22  Click
22 4233659..4233670  attL    AATAAATGTAAC  N/A  Click
23 complement(4233845..4234492)  hypothetical protein; Sbal_3606  N/A  Click
24 complement(4234814..4235428)  PHAGE_Ectoca_1: EsV-1-139; Sbal_3607; phage(gi13242610)  2e-08  Click
25 complement(4235437..4235754)  hypothetical protein; Sbal_3608  N/A  Click
26 complement(4235777..4235995)  XRE family transcriptional regulator; Sbal_3609  N/A  Click
27 complement(4236051..4237307)  PHAGE_Entero_mEp237: integrase; Sbal_3610; phage(gi435439292)  5e-07  Click
28 complement(4237297..4237983)  PHAGE_Pseudo_PAJU2: putative replication protein P; Sbal_3611; phage(gi209552483)  3e-21  Click
29 complement(4237980..4238729)  PHAGE_Entero_mEp460: replication protein; Sbal_3612; phage(gi428782359)  4e-38  Click
30 complement(4238897..4239502)  hypothetical protein; Sbal_3613  N/A  Click
31 complement(4239661..4240284)  PHAGE_Pseudo_phi297: hypothetical protein; Sbal_3614; phage(gi374531276)  6e-12  Click
32 complement(4240316..4240519)  PHAGE_Pectob_ZF40: putative cro anti-repressor; Sbal_3615; phage(gi422936651)  4e-08  Click
33 4240599..4241300  PHAGE_Haemop_Aaphi23: putative CI protein; Sbal_3616; phage(gi31544010)  1e-50  Click
34 4241707..4242597  PHAGE_Salico_CGphi29: DNA methylase; Sbal_3617; phage(gi472340158)  2e-65  Click
35 complement(4242574..4243455)  hypothetical protein; Sbal_3618  N/A  Click
36 4244110..4244463  hypothetical protein; Sbal_3619  N/A  Click
37 4244460..4244720  PHAGE_Entero_mEp460: hypothetical protein; Sbal_3620; phage(gi428782341)  5e-14  Click
38 4244746..4245093  hypothetical protein; Sbal_3621  N/A  Click
39 4245124..4245747  PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; Sbal_3622; phage(gi428782758)  1e-58  Click
40 4245744..4246133  hypothetical protein; Sbal_3623  N/A  Click
41 4246130..4246438  hypothetical protein; Sbal_3624  N/A  Click
42 4246439..4246717  hypothetical protein; Sbal_3625  N/A  Click
43 4246714..4246944  hypothetical protein; Sbal_3626  N/A  Click
44 4247604..4247615  attR    AATAAATGTAAC  N/A  Click
45 complement(4247886..4248827)  PROPHAGE_Neisse_MC58: IS30 family transposase; Sbal_3627; phage(gi15677611)  6e-60  Click
46 4249276..4249289  attR    TAATAGCTATTAAT  N/A  Click
Region 4, total : 7 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 5026603..5026833  integrase, catalytic region; Sbal_4290  N/A  Click
2 complement(5026826..5027638)  PHAGE_Entero_Sf6: putative transposase OrfB; Sbal_4291; phage(gi41057343)  1e-108  Click
3 complement(5027692..5028003)  PHAGE_Entero_Sf6: gene 56 protein; Sbal_4292; phage(gi41057344)  4e-32  Click
4 5028067..5028633  PROPHAGE_Escher_CFT073: transposase insF; Sbal_4293; phage(gi26249410)  6e-20  Click
5 complement(5028675..5029706)  periplasmic binding protein/LacI transcriptional regulator; Sbal_4294  N/A  Click
6 complement(5029799..5031262)  PHAGE_Burkho_phi1026b: gp59; Sbal_4295; phage(gi38707949)  1e-05  Click
7 complement(5031322..5031816)  PHAGE_Bacill_36: baseplate hub protein; Sbal_4296; phage(gi156564128)  2e-09  Click