Definition Polaromonas naphthalenivorans CJ2 chromosome, complete genome.
Accession NC_008781
Length 4,410,291
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 18 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(2398582..2401326)  PHAGE_Roseob_1: tail tape measure protein; Pnap_2248; phage(gi331028134)  2e-51  Click
2 complement(2401432..2402190)  PHAGE_Pseudo_JBD24: hypothetical protein; Pnap_2249; phage(gi448245091)  2e-12  Click
3 complement(2402222..2402641)  hypothetical protein; Pnap_2250  N/A  Click
4 complement(2402642..2402950)  hypothetical protein; Pnap_2251  N/A  Click
5 complement(2402989..2403351)  PHAGE_Stenot_S1: putative recombinase; Pnap_2252; phage(gi213163907)  4e-19  Click
6 complement(2403419..2405443)  PHAGE_Pseudo_F10: Putative Clp protease; Pnap_2253; phage(gi148912770)  4e-133  Click
7 complement(2405542..2407131)  PHAGE_Pseudo_F10: Putative portal protein; Pnap_2254; phage(gi148912769)  3e-104  Click
8 complement(2407141..2407365)  PHAGE_Pseudo_F10: hypothetical protein PPF10_gp003; Pnap_2255; phage(gi148912768)  5e-13  Click
9 complement(2407418..2407771)  hypothetical protein; Pnap_2256  N/A  Click
10 complement(2407771..2409948)  PHAGE_Synech_S_CBS3: large terminase subunit; Pnap_2257; phage(gi331028008)  2e-52  Click
11 complement(2409948..2410454)  PHAGE_Entero_HK225: terminase small subunit nu1; Pnap_2258; phage(gi428782377)  2e-06  Click
12 complement(2410582..2411361)  PHAGE_Pseudo_F10: hypothetical protein PPF10_gp063; Pnap_2259; phage(gi148912828)  2e-23  Click
13 complement(2411367..2412200)  PHAGE_Xantho_CP2: hypothetical protein; Pnap_2260; phage(gi448245213)  6e-08  Click
14 complement(2412209..2412550)  hypothetical protein; Pnap_2261  N/A  Click
15 complement(2412633..2413163)  PHAGE_Burkho_phiE125: hypothetical protein phiE125p56; Pnap_2262; phage(gi17975217)  3e-07  Click
16 2413196..2413450  hypothetical protein; Pnap_2263  N/A  Click
17 complement(2413945..2414508)  PHAGE_Entero_c_1: prophage antirepressor; Pnap_2264; phage(gi428781783)  2e-12  Click
18 2414590..2415114  PHAGE_Entero_c_1: prophage repressor; Pnap_2265; phage(gi428781782)  5e-12  Click
Region 2, total : 20 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2417451..2417467  attL    GCCGAATACGCCGCCGC  N/A  Click
2 2425320..2426315  PHAGE_Pelagi_HTVC019P: integrase; Pnap_2283; phage(gi460042383)  5e-10  Click
3 complement(2426393..2426467)  tRNA  N/A  Click
4 complement(2426499..2427221)  PHAGE_Vibrio_VP882: putative exonuclease; Pnap_2284; phage(gi126010887)  6e-09  Click
5 complement(2427248..2427586)  2Fe-2S type ferredoxin, ISC system; Pnap_2285  N/A  Click
6 complement(2427626..2429488)  PHAGE_Megavi_chiliensis: heat shock 70 kDa protein-like protein; Pnap_2286; phage(gi363540041)  2e-100  Click
7 complement(2429520..2430038)  co-chaperone Hsc20; Pnap_2287  N/A  Click
8 complement(2430136..2430459)  iron-sulfur cluster assembly protein IscA; Pnap_2288  N/A  Click
9 complement(2430496..2430897)  scaffold protein; Pnap_2289  N/A  Click
10 complement(2430965..2432182)  cysteine desulfurase IscS; Pnap_2290  N/A  Click
11 complement(2432256..2432792)  BadM/Rrf2 family transcriptional regulator; Pnap_2291  N/A  Click
12 complement(2432803..2433054)  hypothetical protein; Pnap_2292  N/A  Click
13 complement(2433142..2434104)  PHAGE_Bacill_BPS13: putative tail lysin 2; Pnap_2293; phage(gi410492620)  2e-08  Click
14 complement(2434112..2434363)  hypothetical protein; Pnap_2294  N/A  Click
15 2434578..2435495  PHAGE_Macaci_4: EBNA-1; Pnap_2295; phage(gi51518045)  1e-17  Click
16 complement(2435604..2436269)  DSBA oxidoreductase; Pnap_2296  N/A  Click
17 2436399..2437757  PHAGE_Clostr_st: hypothetical protein CST173; Pnap_2297; phage(gi80159859)  5e-16  Click
18 complement(2437771..2438265)  UspA domain-containing protein; Pnap_2298  N/A  Click
19 2438358..2439362  PHAGE_Acanth_mimivirus: probable zinc-type alcohol dehydrogenase-like protein; Pnap_2299; phage(gi311977890)  6e-15  Click
20 2438730..2438746  attR    GCCGAATACGCCGCCGC  N/A  Click
21 2439538..2440191  transport protein; Pnap_2300  N/A  Click
22 2440243..2440671  PHAGE_Prochl_SSM4: heat shock protein; Pnap_2301; phage(gi61806343)  9e-05  Click
23 2440683..2441414  PHAGE_Plankt_PaV_LD: ABC transporter; Pnap_2302; phage(gi371496158)  4e-34  Click
Region 3, total : 35 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 3491706..3493382  PHAGE_Aeromo_31: hypothetical protein PHG31p231; Pnap_3287; phage(gi66392035)  6e-11  Click
2 complement(3494949..3495995)  PHAGE_Burkho_phi52237: pbsx family phage portal protein; Pnap_3288; phage(gi72537722)  9e-134  Click
3 complement(3495995..3497785)  PHAGE_Burkho_KS14: gp35; Pnap_3289; phage(gi327198304)  0.0  Click
4 3497851..3498771  PHAGE_Burkho_KS14: gp34; Pnap_3290; phage(gi327198303)  1e-62  Click
5 3498821..3499828  PHAGE_Burkho_KS14: gp33; Pnap_3291; phage(gi327198302)  4e-112  Click
6 3499834..3500616  PHAGE_Burkho_KS14: gp32; Pnap_3292; phage(gi327198301)  5e-45  Click
7 3500647..3501111  PHAGE_Burkho_phiE202: gp48, phage head completion protein (GPL); Pnap_3293; phage(gi134288751)  5e-31  Click
8 3501111..3501317  PHAGE_Salmon_RE_2010: tail component protein; Pnap_3294; phage(gi418489702)  8e-17  Click
9 3501321..3501539  hypothetical protein; Pnap_3295  N/A  Click
10 3501536..3502048  PHAGE_Burkho_DC1: lysozyme; Pnap_3296; phage(gi401723082)  3e-50  Click
11 3502045..3502551  PHAGE_Pseudo_YuA: putative holin; Pnap_3297; phage(gi162135142)  4e-08  Click
12 3502553..3502981  PHAGE_Burkho_KS14: gp24; Pnap_3298; phage(gi327198293)  7e-28  Click
13 3502985..3503452  PHAGE_Burkho_KS14: gp23; Pnap_3299; phage(gi327198292)  3e-35  Click
14 3503525..3504178  PHAGE_Burkho_KS14: gp22; Pnap_3300; phage(gi327198291)  5e-40  Click
15 3504175..3504546  PHAGE_Burkho_KS14: gp21; Pnap_3301; phage(gi327198290)  1e-28  Click
16 3504543..3505430  PROPHAGE_Salmon_Ty2: phage baseplate assembly protein; Pnap_3302; phage(gi29143752)  2e-68  Click
17 3505423..3506100  PHAGE_Ralsto_phiRSA1: phage tail protein gpI; Pnap_3303; phage(gi145708096)  7e-29  Click
18 3506107..3507903  PHAGE_Entero_epsilon15: tail fiber; Pnap_3304; phage(gi30387399)  6e-12  Click
19 3507908..3508645  hypothetical protein; Pnap_3305  N/A  Click
20 3508784..3510235  PROPHAGE_Salmon_Ty2: variable tail fiber protein; Pnap_3306; phage(gi29143754)  6e-39  Click
21 3510241..3510531  PHAGE_Synech_S_CRM01: tail fiber assembly-like protein; Pnap_3307; phage(gi333798178)  1e-08  Click
22 3510544..3511719  PHAGE_Burkho_KS14: gp16; Pnap_3308; phage(gi327198285)  4e-149  Click
23 3511745..3512257  PHAGE_Burkho_KS14: gp15; Pnap_3309; phage(gi327198284)  4e-54  Click
24 3512319..3512561  hypothetical protein; Pnap_3310  N/A  Click
25 3512593..3512949  PHAGE_Burkho_KS14: gp13; Pnap_3311; phage(gi327198282)  2e-22  Click
26 3512958..3513074  PHAGE_Burkho_KS14: gp14; Pnap_3312; phage(gi327198283)  1e-07  Click
27 3513109..3515700  PHAGE_Burkho_KS14: gp12; Pnap_3313; phage(gi327198281)  8e-176  Click
28 3515721..3516170  PHAGE_Burkho_KS14: gp11; Pnap_3314; phage(gi327198280)  9e-35  Click
29 3516176..3517210  PHAGE_Burkho_KS14: gp10; Pnap_3315; phage(gi327198279)  1e-83  Click
30 complement(3517327..3517707)  PHAGE_Burkho_KS5: gp11; Pnap_3316; phage(gi327198009)  8e-12  Click
31 3517738..3517989  hypothetical protein; Pnap_3317  N/A  Click
32 3518384..3518809  PHAGE_Burkho_phi52237: putative phage transcriptional activator Ogr/Delta; Pnap_3319; phage(gi72537689)  7e-09  Click
33 3518806..3521694  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp40; Pnap_3320; phage(gi17313257)  0.0  Click
34 3521742..3522446  hypothetical protein; Pnap_3321  N/A  Click
35 3522468..3523019  PHAGE_Escher_P13374: antirepressor; Pnap_3322; phage(gi410491647)  1e-31  Click