Definition Desulfovibrio vulgaris DP4 chromosome, complete genome.
Accession NC_008751
Length 3,462,887
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 16 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1068443..1068454  attL    TCCTTGCTGGTG  N/A  Click
2 complement(1068859..1069581)  PHAGE_Vibrio_kappa: putative NAD-dependent DNA ligase; Dvul_0862; phage(gi165970237)  5e-13  Click
3 complement(1069931..1070302)  PHAGE_Burkho_KS9: major tail subunit gp10; Dvul_0863; phage(gi255033742)  3e-05  Click
4 complement(1070308..1070682)  PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; Dvul_0864; phage(gi374531660)  4e-07  Click
5 complement(1071045..1071374)  PHAGE_Geobac_E2: putative head-tail adaptor; Dvul_0865; phage(gi148747735)  3e-14  Click
6 complement(1071377..1071940)  PHAGE_Burkho_KS9: hypothetical protein gp6; Dvul_0866; phage(gi255033738)  4e-08  Click
7 complement(1072159..1073382)  PHAGE_Salmon_ST64B: Major capsid protein precursor; Dvul_0867; phage(gi23505451)  9e-115  Click
8 complement(1073342..1074094)  PHAGE_Salmon_ST64B: Pro-head protease; Dvul_0868; phage(gi23505450)  7e-31  Click
9 complement(1074075..1075304)  PHAGE_Salmon_ST64B: Portal Protein; Dvul_0869; phage(gi23505449)  1e-71  Click
10 complement(1075301..1076971)  PHAGE_Salmon_ST64B: Terminase large subunit; Dvul_0870; phage(gi23505447)  7e-148  Click
11 complement(1076971..1077429)  PHAGE_Tetras_SI1: terminase small subunit; Dvul_0871; phage(gi472342259)  1e-14  Click
12 complement(1077549..1079603)  PHAGE_Strept_1: transferase; Dvul_0872; phage(gi39653711)  6e-53  Click
13 complement(1079609..1079962)  PHAGE_Salmon_ST64B: hypothetical protein sb56; Dvul_0873; phage(gi23505500)  8e-12  Click
14 1080327..1080734  MucR family transcriptional regulator; Dvul_0874  N/A  Click
15 1080777..1081310  cold-shock DNA-binding domain-containing protein; Dvul_0875  N/A  Click
16 1081307..1081963  hypothetical protein; Dvul_0876  N/A  Click
17 complement(1082097..1083146)  PROPHAGE_Shewan_MR-1: ISSod13, transposase; Dvul_0877; phage(gi24375047)  1e-76  Click
18 1083154..1083165  attR    TCCTTGCTGGTG  N/A  Click
Region 2, total : 33 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1745393..1745686)  PHAGE_Burkho_2: gp6, putative addiction module antidote protein; Dvul_1443; phage(gi134288715)  1e-17  Click
2 complement(1745670..1745984)  PHAGE_Burkho_2: gp7, putative addiction module killer protein; Dvul_1444; phage(gi134288691)  1e-23  Click
3 complement(1746207..1746446)  hypothetical protein; Dvul_1445  N/A  Click
4 complement(1747426..1748505)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_46; Dvul_1446; phage(gi148727175)  3e-41  Click
5 complement(1748490..1749176)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_46; Dvul_1447; phage(gi148727175)  2e-33  Click
6 complement(1749173..1749733)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_45; Dvul_1448; phage(gi148727174)  2e-20  Click
7 complement(1749730..1750665)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_44; Dvul_1449; phage(gi148727173)  5e-14  Click
8 complement(1750668..1751204)  PHAGE_Entero_HK630: tail fiber assembly protein; Dvul_1450; phage(gi428782810)  1e-07  Click
9 complement(1751221..1752618)  PHAGE_Aeromo_phiO18P: putative tail fiber protein; Dvul_1451; phage(gi158518662)  2e-34  Click
10 complement(1752615..1753226)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_41; Dvul_1452; phage(gi148727169)  7e-30  Click
11 complement(1753223..1754434)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_40; Dvul_1453; phage(gi148727168)  1e-89  Click
12 1754463..1754807  plasmid maintenance system killer; Dvul_1454  N/A  Click
13 1754818..1755120  PHAGE_Aeromo_Aes012: putative XRE family plasmid maintenance system antidote protein; Dvul_1455; phage(gi472438177)  6e-14  Click
14 complement(1755141..1755467)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_39; Dvul_1456; phage(gi148727167)  7e-19  Click
15 complement(1755471..1757267)  PHAGE_Aeromo_phiO18P: putative tail tape measure protein; Dvul_1457; phage(gi148727166)  2e-119  Click
16 complement(1757288..1757428)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_37; Dvul_1458; phage(gi148727165)  2e-05  Click
17 complement(1757473..1757733)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_36; Dvul_1459; phage(gi148727164)  1e-14  Click
18 complement(1757743..1758057)  hypothetical protein; Dvul_1460  N/A  Click
19 complement(1758253..1758603)  PHAGE_Burkho_KL3: gp32; Dvul_1461; phage(gi327198077)  2e-05  Click
20 complement(1758600..1759028)  PHAGE_Entero_epsilon15: hypothetical protein epsilon15p15; Dvul_1462; phage(gi30387394)  1e-26  Click
21 complement(1759025..1759231)  PHAGE_Aeromo_phiO18P: putative zinc finger protein; Dvul_1463; phage(gi148727160)  3e-09  Click
22 complement(1759240..1759728)  PHAGE_Aeromo_phiO18P: putative tail tube protein; Dvul_1464; phage(gi148727159)  4e-38  Click
23 complement(1759736..1760845)  PHAGE_Aeromo_phiO18P: putative tail sheath protein; Dvul_1465; phage(gi148727158)  9e-82  Click
24 complement(1760856..1761542)  PHAGE_Aeromo_phiO18P: putative tail completion protein; Dvul_1466; phage(gi148727157)  2e-13  Click
25 complement(1761535..1761999)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_27; Dvul_1467; phage(gi148727156)  5e-12  Click
26 complement(1762002..1762493)  PHAGE_Aeromo_phiO18P: putative head completion protein; Dvul_1468; phage(gi148727155)  1e-10  Click
27 complement(1762562..1763296)  PHAGE_Burkho_2: gp1, phage small terminase subunit; Dvul_1469; phage(gi134288705)  1e-15  Click
28 complement(1763299..1764324)  PHAGE_Burkho_phiE202: gp2, phage major capsid protein, P2 family; Dvul_1470; phage(gi134288740)  9e-55  Click
29 complement(1764333..1765193)  PHAGE_Aeromo_phiO18P: putative capsid scaffolding protein; Dvul_1471; phage(gi148727152)  6e-37  Click
30 1765341..1767140  PHAGE_Aeromo_phiO18P: putative terminase large subunit; Dvul_1472; phage(gi148727151)  7e-133  Click
31 1767151..1768194  PHAGE_Aeromo_phiO18P: putative portal protein; Dvul_1473; phage(gi148727149)  8e-67  Click
32 1768313..1769038  hypothetical protein; Dvul_1474  N/A  Click
33 1769160..1769399  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_19; Dvul_1475; phage(gi148727148)  6e-10  Click
Region 3, total : 12 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1776368..1779127)  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp40; Dvul_1484; phage(gi17313257)  3e-124  Click
2 1778196..1778275  attL    AGCCCGCGCCGATGGCGGCGGTAATAGACGTAGGCCTTCTCCTGCACCGTCTCCGCCATGAAGAGGCGTCCGTAGTACAG  N/A  Click
3 complement(1779304..1779774)  hypothetical protein; Dvul_1485  N/A  Click
4 complement(1779764..1780090)  hypothetical protein; Dvul_1486  N/A  Click
5 1780775..1781803  PHAGE_Ralsto_phiRSA1: site-specific recombinase; Dvul_1487; phage(gi145708124)  7e-12  Click
6 complement(1782643..1782906)  PHAGE_Burkho_2: gp6, putative addiction module antidote protein; Dvul_1488; phage(gi134288715)  3e-12  Click
7 complement(1782963..1783544)  PHAGE_Vibrio_K139: hypothetical protein K139p38; Dvul_1489; phage(gi17975143)  9e-19  Click
8 1783598..1783867  PHAGE_Burkho_phiE202: gp6, pANL56; Dvul_1490; phage(gi134288760)  2e-09  Click
9 1783854..1784171  PHAGE_Burkho_phiE202: gp7, pANL12; Dvul_1491; phage(gi134288781)  2e-05  Click
10 complement(1784195..1784530)  hypothetical protein; Dvul_1492  N/A  Click
11 1784900..1785172  hypothetical protein; Dvul_1494  N/A  Click
12 1785150..1785392  CopG family protein; Dvul_1495  N/A  Click
13 complement(1785488..1786192)  PHAGE_Vibrio_K139: putative tail length determinator; Dvul_1496; phage(gi17975141)  3e-19  Click
14 1786387..1786466  attR    AGCCCGCGCCGATGGCGGCGGTAATAGACGTAGGCCTTCTCCTGCACCGTCTCCGCCATGAAGAGGCGTCCGTAGTACAG  N/A  Click
Region 4, total : 42 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 3198009..3198055  attL    GCCTTTTAAGCAGAGAGTCGCAGGTTCGAATCCTGCACGACCCACCA  N/A  Click
2 complement(3198595..3199383)  PHAGE_Bordet_1: adenine DNA methyltransferase; Dvul_2741; phage(gi41179391)  1e-56  Click
3 complement(3199361..3199546)  PHAGE_Burkho_KS5: gp21; Dvul_2742; phage(gi327198019)  8e-06  Click
4 complement(3199543..3200622)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_46; Dvul_2743; phage(gi148727175)  6e-41  Click
5 complement(3200607..3201293)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_46; Dvul_2744; phage(gi148727175)  3e-32  Click
6 complement(3201290..3201850)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_45; Dvul_2745; phage(gi148727174)  2e-20  Click
7 complement(3201847..3202785)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_44; Dvul_2746; phage(gi148727173)  2e-14  Click
8 complement(3202788..3203225)  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp23; Dvul_2747; phage(gi17313240)  8e-09  Click
9 complement(3203235..3204818)  PHAGE_Aeromo_phiO18P: putative tail fiber protein; Dvul_2748; phage(gi158518662)  4e-33  Click
10 complement(3204815..3205426)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_41; Dvul_2749; phage(gi148727169)  7e-30  Click
11 complement(3205423..3206631)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_40; Dvul_2750; phage(gi148727168)  2e-89  Click
12 complement(3206633..3206959)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_39; Dvul_2751; phage(gi148727167)  5e-17  Click
13 complement(3206963..3208759)  PHAGE_Aeromo_phiO18P: putative tail tape measure protein; Dvul_2752; phage(gi148727166)  4e-120  Click
14 complement(3208780..3208920)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_37; Dvul_2753; phage(gi148727165)  2e-05  Click
15 complement(3208965..3209225)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_36; Dvul_2754; phage(gi148727164)  1e-14  Click
16 complement(3209235..3209549)  hypothetical protein; Dvul_2755  N/A  Click
17 complement(3209745..3210095)  PHAGE_Burkho_KL3: gp32; Dvul_2756; phage(gi327198077)  2e-05  Click
18 complement(3210092..3210520)  PHAGE_Entero_epsilon15: hypothetical protein epsilon15p15; Dvul_2757; phage(gi30387394)  2e-26  Click
19 complement(3210517..3210723)  PHAGE_Aeromo_phiO18P: putative zinc finger protein; Dvul_2758; phage(gi148727160)  3e-09  Click
20 complement(3210732..3211220)  PHAGE_Aeromo_phiO18P: putative tail tube protein; Dvul_2759; phage(gi148727159)  4e-38  Click
21 complement(3211228..3212337)  PHAGE_Aeromo_phiO18P: putative tail sheath protein; Dvul_2760; phage(gi148727158)  2e-81  Click
22 complement(3212348..3213034)  PHAGE_Aeromo_phiO18P: putative tail completion protein; Dvul_2761; phage(gi148727157)  2e-13  Click
23 complement(3213027..3213491)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_27; Dvul_2762; phage(gi148727156)  1e-12  Click
24 complement(3213494..3213949)  PHAGE_Aeromo_phiO18P: putative head completion protein; Dvul_2763; phage(gi148727155)  9e-11  Click
25 complement(3214054..3214788)  PHAGE_Aeromo_phiO18P: putative terminase small subunit; Dvul_2764; phage(gi148727154)  1e-15  Click
26 complement(3214791..3215816)  PHAGE_Burkho_phiE202: gp2, phage major capsid protein, P2 family; Dvul_2765; phage(gi134288740)  9e-55  Click
27 complement(3215825..3216673)  PHAGE_Aeromo_phiO18P: putative capsid scaffolding protein; Dvul_2766; phage(gi148727152)  1e-36  Click
28 3216821..3218620  PHAGE_Aeromo_phiO18P: putative terminase large subunit; Dvul_2767; phage(gi148727151)  7e-133  Click
29 3218631..3219674  PHAGE_Aeromo_phiO18P: putative portal protein; Dvul_2768; phage(gi148727149)  4e-69  Click
30 3219743..3219985  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_19; Dvul_2769; phage(gi148727148)  3e-09  Click
31 complement(3220041..3220478)  PHAGE_Bacill_phi105: hypothetical protein phi105_48; Dvul_2770; phage(gi22855041)  4e-11  Click
32 complement(3220575..3220781)  PHAGE_Haemop_HP2: hypothetical protein HP2p13; Dvul_2771; phage(gi19289355)  3e-12  Click
33 complement(3220999..3221244)  hypothetical protein; Dvul_2772  N/A  Click
34 complement(3221234..3221500)  hypothetical protein; Dvul_2773  N/A  Click
35 complement(3221497..3221925)  hypothetical protein; Dvul_2774  N/A  Click
36 3222228..3223205  PROPHAGE_Escher_Sakai: ATP-dependent metalloprotease; Dvul_2775; phage(gi15833311)  7e-17  Click
37 3223218..3225710  subtilisin-like serine protease; Dvul_2776  N/A  Click
38 complement(3227345..3230068)  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp40; Dvul_2777; phage(gi17313257)  4e-130  Click
39 complement(3230245..3230703)  hypothetical protein; Dvul_2778  N/A  Click
40 complement(3230696..3231049)  hypothetical protein; Dvul_2779  N/A  Click
41 3231137..3231403  hypothetical protein; Dvul_2780  N/A  Click
42 3231475..3231735  hypothetical protein; Dvul_2781  N/A  Click
43 3231739..3232809  PHAGE_Lactoc_Tuc2009: integrase; Dvul_2782; phage(gi13487802)  2e-10  Click
44 3232892..3232938  attR    GCCTTTTAAGCAGAGAGTCGCAGGTTCGAATCCTGCACGACCCACCA  N/A  Click