Definition Shewanella sp. W3-18-1 chromosome, complete genome.
Accession NC_008750
Length 4,708,380
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 74 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2831375..2831386  attL    CTGTGTACATAT  N/A  Click
2 complement(2833092..2839295)  PHAGE_Entero_HK633: central tail fiber; Sputw3181_2456; phage(gi428782540)  0.0  Click
3 complement(2839301..2839951)  PHAGE_Escher_HK639: tail assembly protein; Sputw3181_2457; phage(gi356870622)  1e-47  Click
4 complement(2840072..2840962)  PHAGE_Escher_HK639: rha protein; Sputw3181_2458; phage(gi356870673)  7e-28  Click
5 complement(2840959..2841633)  PHAGE_Entero_HK140: DNA-binding protein; Sputw3181_2459; phage(gi428781998)  1e-40  Click
6 2841911..2842402  PHAGE_Salmon_SPN3UB: Arc-like DNA binding domain protein; Sputw3181_2460; phage(gi423262396)  2e-07  Click
7 complement(2842441..2842959)  putative lipoprotein; Sputw3181_2461  N/A  Click
8 complement(2843046..2843759)  PHAGE_Entero_HK140: minor tail protein K; Sputw3181_2462; phage(gi428781957)  4e-54  Click
9 complement(2843811..2844536)  PHAGE_Entero_HK140: minor tail protein L; Sputw3181_2463; phage(gi428781956)  1e-68  Click
10 complement(2844529..2844816)  PHAGE_Vibrio_VHML: ORF38; Sputw3181_2464; phage(gi27311205)  4e-26  Click
11 complement(2844803..2846077)  PHAGE_Vibrio_VHML: ORF37; Sputw3181_2465; phage(gi27311204)  5e-100  Click
12 complement(2846074..2846427)  hypothetical protein; Sputw3181_2466  N/A  Click
13 complement(2846487..2847692)  PHAGE_Vibrio_VHML: ORF35; Sputw3181_2467; phage(gi27311203)  1e-126  Click
14 complement(2847732..2848067)  PHAGE_Escher_HK75: minor tail protein; Sputw3181_2468; phage(gi356870692)  1e-26  Click
15 complement(2848071..2848376)  hypothetical protein; Sputw3181_2469  N/A  Click
16 complement(2848378..2851794)  PHAGE_Xantho_CP1: putative tail length tape measure protein; Sputw3181_2470; phage(gi431811013)  3e-118  Click
17 2851822..2851833  attL    TGGTTTTACTGC  N/A  Click
18 complement(2851875..2852018)  hypothetical protein; Sputw3181_2471  N/A  Click
19 complement(2852057..2852551)  PHAGE_Entero_HK140: tail assembly chaperone; Sputw3181_2472; phage(gi428781952)  7e-16  Click
20 complement(2852641..2853114)  PHAGE_Pseudo_vB_PaeS_PMG1: putative major tail protein; Sputw3181_2473; phage(gi374531661)  6e-27  Click
21 complement(2853205..2853573)  PHAGE_Entero_HK140: hypothetical protein; Sputw3181_2474; phage(gi428781950)  1e-36  Click
22 complement(2853570..2854034)  PHAGE_Entero_HK140: hypothetical protein; Sputw3181_2475; phage(gi428781949)  4e-23  Click
23 complement(2854036..2854398)  PHAGE_Entero_HK140: hypothetical protein; Sputw3181_2476; phage(gi428781948)  2e-10  Click
24 complement(2854398..2854694)  PHAGE_Pseudo_vB_PaeS_PMG1: putative head-tail connector protein; Sputw3181_2477; phage(gi374531654)  5e-27  Click
25 complement(2854716..2855015)  PHAGE_Helico_2: hypothetical protein; Sputw3181_2478; phage(gi370703036)  1e-07  Click
26 complement(2855112..2856302)  PHAGE_Pseudo_D3: major head protein; Sputw3181_2479; phage(gi9635591)  1e-147  Click
27 complement(2856315..2857169)  PHAGE_Entero_mEp235: head maturation protease; Sputw3181_2480; phage(gi428781814)  5e-60  Click
28 complement(2857179..2858477)  PHAGE_Pseudo_D3: portal protein; Sputw3181_2481; phage(gi9635589)  1e-135  Click
29 complement(2858474..2858635)  PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; Sputw3181_2482; phage(gi374531648)  3e-09  Click
30 complement(2858635..2860380)  PHAGE_Tetras_SI1: terminase; Sputw3181_2483; phage(gi472342258)  6e-126  Click
31 complement(2860337..2860849)  PHAGE_Entero_mEp235: terminase small subunit; Sputw3181_2484; phage(gi428781811)  3e-23  Click
32 complement(2860860..2861189)  PHAGE_Pseudo_PAJU2: putative endonuclease; Sputw3181_2485; phage(gi209552497)  4e-32  Click
33 complement(2861186..2861575)  hypothetical protein; Sputw3181_2486  N/A  Click
34 complement(2861568..2861837)  hypothetical protein; Sputw3181_2487  N/A  Click
35 complement(2861954..2862478)  hypothetical protein; Sputw3181_2488  N/A  Click
36 complement(2862728..2863240)  PHAGE_Burkho_DC1: lysozyme; Sputw3181_2489; phage(gi401723082)  2e-42  Click
37 complement(2863243..2863503)  hypothetical protein; Sputw3181_2490  N/A  Click
38 complement(2863599..2864189)  hypothetical protein; Sputw3181_2491  N/A  Click
39 complement(2864248..2864571)  PHAGE_Entero_N15: gp57; Sputw3181_2492; phage(gi9630522)  5e-21  Click
40 complement(2865005..2865328)  PHAGE_Burkho_Bcep22: Bcep22gp33; Sputw3181_2493; phage(gi38640339)  4e-15  Click
41 complement(2865328..2865570)  hypothetical protein; Sputw3181_2494  N/A  Click
42 complement(2865850..2867049)  PROPHAGE_Escher_MG1655: CP4-57 prophage; integrase; Sputw3181_2495; phage(gi16130540)  1e-12  Click
43 complement(2867049..2867648)  hypothetical protein; Sputw3181_2496  N/A  Click
44 complement(2867648..2868217)  phage protein; Sputw3181_2497  N/A  Click
45 complement(2868214..2868645)  hypothetical protein; Sputw3181_2498  N/A  Click
46 complement(2868645..2869151)  PHAGE_Marino_P12026: hypothetical protein; Sputw3181_2499; phage(gi399528341)  1e-27  Click
47 complement(2869148..2869540)  hypothetical protein; Sputw3181_2500  N/A  Click
48 complement(2869524..2870084)  PHAGE_Pseudo_PAJU2: putative replication protein P; Sputw3181_2501; phage(gi209552483)  2e-16  Click
49 complement(2870056..2871123)  PHAGE_Entero_HK140: DNA replication protein O; Sputw3181_2502; phage(gi428781991)  3e-41  Click
50 complement(2871180..2871437)  hypothetical protein; Sputw3181_2503  N/A  Click
51 complement(2871437..2871631)  PHAGE_Erwini_phiEt88: hypothetical protein; Sputw3181_2504; phage(gi327198594)  6e-05  Click
52 complement(2871624..2872205)  PHAGE_Burkho_phiE125: hypothetical protein phiE125p56; Sputw3181_2505; phage(gi17975217)  9e-14  Click
53 complement(2872239..2872538)  PHAGE_Stx2_c_II: Cro protein; Sputw3181_2506; phage(gi302393139)  9e-08  Click
54 2872587..2873246  PHAGE_Entero_HK140: prophage repressor; Sputw3181_2507; phage(gi428781988)  3e-46  Click
55 2873281..2873703  PHAGE_Salmon_SSU5: putative lipoprotein; Sputw3181_2508; phage(gi410491532)  1e-10  Click
56 2873716..2874612  PHAGE_Staphy_phi2958PVL: hypothetical protein phi2958PVL_gp05; Sputw3181_2509; phage(gi209363557)  9e-23  Click
57 complement(2874672..2875388)  PHAGE_Cronob_ENT39118: tail assembly protein; Sputw3181_2510; phage(gi431811064)  2e-43  Click
58 2875707..2875718  attR    TGGTTTTACTGC  N/A  Click
59 2876609..2876848  hypothetical protein; Sputw3181_2511  N/A  Click
60 2876989..2877414  hypothetical protein; Sputw3181_2512  N/A  Click
61 2877407..2877685  hypothetical protein; Sputw3181_2513  N/A  Click
62 2877773..2878177  hypothetical protein; Sputw3181_2514  N/A  Click
63 2878174..2878698  PHAGE_Escher_D108: hypothetical protein; Sputw3181_2515; phage(gi281199656)  4e-07  Click
64 2878695..2879237  PHAGE_Bacill_SPBc2: hypothetical protein SPBc2p116; Sputw3181_2516; phage(gi9630241)  4e-06  Click
65 2879231..2879395  hypothetical protein; Sputw3181_2517  N/A  Click
66 2879405..2879989  hypothetical protein; Sputw3181_2518  N/A  Click
67 2879986..2880705  PHAGE_Pseudo_F116: hypothetical protein F116p06; Sputw3181_2519; phage(gi56692933)  2e-18  Click
68 2880702..2881025  hypothetical protein; Sputw3181_2520  N/A  Click
69 2881022..2881381  hypothetical protein; Sputw3181_2521  N/A  Click
70 2881383..2882267  PHAGE_Entero_HK140: DNA N-6-adenine-methyltransferase; Sputw3181_2522; phage(gi428781995)  1e-22  Click
71 2882255..2883925  PHAGE_Pectob_ZF40: putative methylase; Sputw3181_2523; phage(gi422936661)  4e-162  Click
72 2883934..2884170  PHAGE_Bacill_phBC6A51: hypothetical protein BC1874; Sputw3181_2524; phage(gi31415768)  6e-17  Click
73 2884163..2884954  PHAGE_Bacill_phBC6A51: hypothetical protein BC1875; Sputw3181_2525; phage(gi31415769)  3e-33  Click
74 2884951..2885076  hypothetical protein; Sputw3181_2526  N/A  Click
75 2885073..2885348  hypothetical protein; Sputw3181_2527  N/A  Click
76 2885348..2885932  PHAGE_Pseudo_M6: hypothetical protein ORF082; Sputw3181_2528; phage(gi149408311)  6e-10  Click
77 complement(2886120..2887328)  PHAGE_Entero_HK140: integrase; Sputw3181_2529; phage(gi428781968)  5e-87  Click
78 2887338..2887349  attR    CTGTGTACATAT  N/A  Click
Region 2, total : 39 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 3308049..3308086  attL    ATGTAGGTGTTCTGGACGCGGGTTCAAGTCCCGCCGCC  N/A  Click
2 complement(3309661..3310401)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_46; Sputw3181_2878; phage(gi148727175)  4e-32  Click
3 complement(3310404..3311093)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_46; Sputw3181_2879; phage(gi148727175)  2e-38  Click
4 complement(3311093..3311620)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_45; Sputw3181_2880; phage(gi148727174)  2e-28  Click
5 complement(3311621..3314272)  PHAGE_Aeromo_phiO18P: putative tail fiber protein; Sputw3181_2881; phage(gi158518662)  6e-43  Click
6 complement(3314309..3314944)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_41; Sputw3181_2882; phage(gi148727169)  8e-24  Click
7 complement(3314941..3316140)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_40; Sputw3181_2883; phage(gi148727168)  3e-89  Click
8 complement(3316140..3316472)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_39; Sputw3181_2884; phage(gi148727167)  1e-14  Click
9 complement(3316469..3318217)  PHAGE_Aeromo_phiO18P: putative tail tape measure protein; Sputw3181_2885; phage(gi148727166)  6e-135  Click
10 complement(3318420..3318683)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_36; Sputw3181_2886; phage(gi148727164)  2e-10  Click
11 complement(3318680..3318943)  hypothetical protein; Sputw3181_2887  N/A  Click
12 complement(3318947..3319555)  PHAGE_Thalas_BA3: hypothetical protein BA3_0023; Sputw3181_2888; phage(gi160700617)  2e-25  Click
13 complement(3319567..3320115)  PHAGE_Vibrio_VP882: conserved putative phage-related protein; Sputw3181_2889; phage(gi126010911)  5e-50  Click
14 complement(3320117..3320320)  PHAGE_Aeromo_phiO18P: putative zinc finger protein; Sputw3181_2890; phage(gi148727160)  3e-06  Click
15 complement(3320351..3320806)  PHAGE_Aeromo_phiO18P: putative tail tube protein; Sputw3181_2891; phage(gi148727159)  1e-40  Click
16 complement(3320819..3321925)  PHAGE_Aeromo_phiO18P: putative tail sheath protein; Sputw3181_2892; phage(gi148727158)  2e-88  Click
17 complement(3321928..3322590)  PHAGE_Aeromo_phiO18P: putative tail completion protein; Sputw3181_2893; phage(gi148727157)  7e-18  Click
18 complement(3322587..3323075)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_27; Sputw3181_2894; phage(gi148727156)  2e-14  Click
19 complement(3323072..3323545)  PHAGE_Aeromo_phiO18P: putative head completion protein; Sputw3181_2895; phage(gi148727155)  5e-10  Click
20 complement(3323672..3324145)  PHAGE_Aeromo_phiO18P: putative terminase small subunit; Sputw3181_2896; phage(gi148727154)  7e-34  Click
21 complement(3324364..3324966)  PHAGE_Yersin_phiR201: phage tail fibers; Sputw3181_2897; phage(gi431810217)  4e-06  Click
22 complement(3325044..3326087)  PHAGE_Aeromo_phiO18P: putative major capsid protein; Sputw3181_2898; phage(gi148727153)  2e-101  Click
23 complement(3326137..3327057)  PHAGE_Aeromo_phiO18P: putative capsid scaffolding protein; Sputw3181_2899; phage(gi148727152)  2e-51  Click
24 3327261..3329069  PHAGE_Aeromo_phiO18P: putative terminase large subunit; Sputw3181_2900; phage(gi148727151)  0.0  Click
25 3329051..3330097  PHAGE_Aeromo_phiO18P: putative portal protein; Sputw3181_2901; phage(gi148727149)  1e-91  Click
26 complement(3330135..3330491)  hypothetical protein; Sputw3181_2902  N/A  Click
27 complement(3330502..3330756)  prevent-host-death family protein; Sputw3181_2903  N/A  Click
28 3331010..3331258  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_19; Sputw3181_2904; phage(gi148727148)  4e-18  Click
29 complement(3332204..3334441)  PHAGE_Haemop_HP1: replication protein; Sputw3181_2905; phage(gi9628613)  9e-77  Click
30 complement(3334445..3335071)  PHAGE_Plankt_PaV_LD: DNA N-6-adenine-methyltransferase; Sputw3181_2906; phage(gi371496242)  1e-08  Click
31 complement(3335068..3335361)  hypothetical protein; Sputw3181_2907  N/A  Click
32 complement(3335336..3335575)  hypothetical protein; Sputw3181_2908  N/A  Click
33 complement(3335819..3336385)  PHAGE_Aeromo_phiO18P: putative cII protein; Sputw3181_2909; phage(gi148727135)  9e-19  Click
34 complement(3336501..3336701)  PHAGE_Aeromo_phiO18P: putative cox protein; Sputw3181_2910; phage(gi148727134)  7e-10  Click
35 3336800..3337492  PHAGE_Entero_2: P2 CI-like protein; Sputw3181_2911; phage(gi169936063)  3e-10  Click
36 3337504..3337929  hypothetical protein; Sputw3181_2912  N/A  Click
37 3338016..3338975  PHAGE_Lactoc_1: ORF54; Sputw3181_2913; phage(gi13786585)  5e-07  Click
38 3338996..3339601  hypothetical protein; Sputw3181_2914  N/A  Click
39 3339611..3340228  hypothetical protein; Sputw3181_2915  N/A  Click
40 3340238..3341257  PHAGE_Salmon_RE_2010: integrase; Sputw3181_2916; phage(gi418489683)  9e-113  Click
41 3342808..3342845  attR    ATGTAGGTGTTCTGGACGCGGGTTCAAGTCCCGCCGCC  N/A  Click
Region 3, total : 14 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(3352843..3353604)  PHAGE_Aeromo_phiO18P: putative cI repressor; Sputw3181_2930; phage(gi148727133)  1e-28  Click
2 3353750..3354073  PHAGE_Entero_Mu: DNA binding protein ner; Sputw3181_2931; phage(gi9633495)  5e-13  Click
3 3354191..3354679  PHAGE_Burkho_BcepMu: gp13; Sputw3181_2932; phage(gi48696923)  6e-47  Click
4 3354551..3354566  attL    CAGAGTGCCGCCACAG  N/A  Click
5 3354672..3356855  PHAGE_Pseudo_MP42: A transposase; Sputw3181_2933; phage(gi399528585)  5e-19  Click
6 3356900..3357619  PHAGE_Pseudo_MP42: DNA transposition protein; Sputw3181_2934; phage(gi399528586)  2e-29  Click
7 3357625..3357921  PHAGE_Rhodov_RS1: hypothetical protein; Sputw3181_2935; phage(gi472342884)  1e-05  Click
8 3357899..3358225  PHAGE_Rhodov_RS1: hypothetical protein; Sputw3181_2936; phage(gi472342885)  2e-15  Click
9 3358500..3358712  hypothetical protein; Sputw3181_2937  N/A  Click
10 3358717..3358959  hypothetical protein; Sputw3181_2938  N/A  Click
11 3359146..3359580  hypothetical protein; Sputw3181_2939  N/A  Click
12 3359766..3360671  PHAGE_Pseudo_MP42: hypothetical protein; Sputw3181_2940; phage(gi399528614)  3e-84  Click
13 3360685..3361074  PHAGE_Escher_D108: late gene transcriptional activator; Sputw3181_2941; phage(gi281199664)  1e-10  Click
14 3361200..3361751  hypothetical protein; Sputw3181_2942  N/A  Click
15 3361910..3364774  PHAGE_Pseudo_MP42: putative tail component protein; Sputw3181_2943; phage(gi399528622)  7e-75  Click
16 3377539..3377554  attR    CAGAGTGCCGCCACAG  N/A  Click