| Definition | Paracoccus denitrificans PD1222 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008686 |
| Length | 2,852,282 |
Legend
| Hits against Virus and prophage DB | |
| Hits against Bacterial DB or GenBank file |
Region 1, total : 18 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(237429..237779) | PHAGE_Mycoba_Brujita: gp60; Pden_0257; phage(gi206599604) | 3e-21 | Click |
| 2 | complement(237776..238126) | hypothetical protein; Pden_0258 | N/A | Click |
| 3 | 238183..238512 | hypothetical protein; Pden_0259 | N/A | Click |
| 4 | complement(238789..239064) | hypothetical protein; Pden_0260 | N/A | Click |
| 5 | complement(239190..239984) | PHAGE_Pseudo_F116: DNA adenine methyltransferase; Pden_0261; phage(gi56692911) | 7e-86 | Click |
| 6 | complement(239981..240562) | PHAGE_Entero_T7: hypothetical protein T7p41; Pden_0262; phage(gi9627466) | 5e-11 | Click |
| 7 | complement(240559..242226) | PHAGE_Burkho_Bcep22: Bcep22gp25; Pden_0263; phage(gi38640332) | 8e-33 | Click |
| 8 | 242420..242716 | PHAGE_Riemer_RAP44: DUF2136 superfamily protein; Pden_0264; phage(gi418489860) | 3e-12 | Click |
| 9 | 242716..243093 | PHAGE_Entero_4795: hypothetical protein PBV4795_ORF21; Pden_0265; phage(gi157166006) | 2e-17 | Click |
| 10 | 243083..243817 | hypothetical protein; Pden_0266 | N/A | Click |
| 11 | complement(243957..244910) | PHAGE_Pseudo_PaP1: endolysin; Pden_0267; phage(gi431809590) | 1e-21 | Click |
| 12 | complement(244980..245237) | hypothetical protein; Pden_0268 | N/A | Click |
| 13 | complement(245264..245617) | PHAGE_Roseob_1: ribonuclease III; Pden_0269; phage(gi331028139) | 2e-20 | Click |
| 14 | complement(245625..249644) | PHAGE_Roseob_1: gene transfer agent; Pden_0270; phage(gi331028138) | 0.0 | Click |
| 15 | complement(249649..250086) | PHAGE_Roseob_1: phage cell wall peptidase; Pden_0271; phage(gi331028137) | 9e-26 | Click |
| 16 | complement(250083..250967) | PHAGE_Roseob_1: gene transfer agent; Pden_0272; phage(gi331028136) | 8e-69 | Click |
| 17 | complement(250964..251590) | PHAGE_Roseob_1: putative glycoside hydrolase; Pden_0273; phage(gi331028135) | 6e-49 | Click |
| 18 | complement(251590..252849) | PHAGE_Burkho_BcepNazgul: conserved tail assembly protein; Pden_0274; phage(gi34610156) | 8e-13 | Click |
Region 2, total : 25 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 331125..332267 | PHAGE_Rhodob_RcapNL: phage P4 alpha zn-binding domain-containing protein; Pden_0352; phage(gi461475018) | 5e-107 | Click |
| 2 | 332260..334101 | PHAGE_Rhodob_RcapNL: P4 family phage/plasmid primase; Pden_0353; phage(gi461475021) | 4e-159 | Click |
| 3 | complement(334153..334449) | hypothetical protein; Pden_0354 | N/A | Click |
| 4 | 334560..335318 | PHAGE_Rhodob_RcapNL: hypothetical protein; Pden_0355; phage(gi461474958) | 9e-23 | Click |
| 5 | 335488..335838 | PHAGE_Rhodob_RcapNL: HNH endonuclease; Pden_0356; phage(gi461474959) | 3e-29 | Click |
| 6 | 335888..336148 | hypothetical protein; Pden_0357 | N/A | Click |
| 7 | 336322..336825 | PHAGE_Rhodob_RcapNL: hypothetical protein; Pden_0358; phage(gi461474960) | 2e-33 | Click |
| 8 | 336815..338536 | PHAGE_Burkho_Bcep176: gp79; Pden_0359; phage(gi77864705) | 2e-117 | Click |
| 9 | 338536..339873 | PHAGE_Tetras_SI1: portal protein; Pden_0360; phage(gi472342257) | 3e-81 | Click |
| 10 | 339860..340702 | PHAGE_Entero_mEp235: head maturation protease; Pden_0361; phage(gi428781814) | 5e-71 | Click |
| 11 | 340714..342063 | PHAGE_Pseudo_vB_PaeS_PMG1: major capsid protein; Pden_0362; phage(gi374531651) | 6e-84 | Click |
| 12 | 342121..342429 | hypothetical protein; Pden_0363 | N/A | Click |
| 13 | 342471..342965 | PHAGE_Tetras_SI1: hypothetical protein; Pden_0364; phage(gi472342253) | 9e-29 | Click |
| 14 | 342934..343482 | hypothetical protein; Pden_0365 | N/A | Click |
| 15 | 343476..343835 | PHAGE_Rhizob_3: p010; Pden_0366; phage(gi195546541) | 1e-09 | Click |
| 16 | 343922..344218 | PHAGE_Rhizob_3: p012; Pden_0367; phage(gi195546543) | 8e-09 | Click |
| 17 | complement(344215..344742) | hypothetical protein; Pden_0368 | N/A | Click |
| 18 | 344752..345042 | PHAGE_Rhizob_3: p011; Pden_0369; phage(gi195546542) | 2e-05 | Click |
| 19 | 345234..345695 | hypothetical protein; Pden_0370 | N/A | Click |
| 20 | 345695..346084 | PHAGE_Rhizob_3: p015; Pden_0371; phage(gi195546546) | 4e-19 | Click |
| 21 | 346245..349151 | PHAGE_Xantho_Xp10: tail lenght tape measure protein; Pden_0372; phage(gi32128430) | 8e-26 | Click |
| 22 | 349151..349831 | PHAGE_Rhizob_3: p018; Pden_0373; phage(gi195546549) | 1e-09 | Click |
| 23 | 349828..350394 | hypothetical protein; Pden_0374 | N/A | Click |
| 24 | 350379..350750 | PHAGE_Rhizob_3: p021; Pden_0375; phage(gi195546552) | 2e-08 | Click |
| 25 | 350750..352792 | PHAGE_Rhodob_RcapNL: phage tail component protein; Pden_0376; phage(gi461474981) | 7e-15 | Click |
Region 3, total : 27 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 961553..962695 | PHAGE_Rhodob_RcapNL: phage P4 alpha zn-binding domain-containing protein; Pden_0981; phage(gi461475018) | 2e-108 | Click |
| 2 | 962688..962936 | hypothetical protein; Pden_0982 | N/A | Click |
| 3 | 962933..964771 | PHAGE_Rhodob_RcapNL: P4 family phage/plasmid primase; Pden_0983; phage(gi461475021) | 3e-155 | Click |
| 4 | 965147..965905 | PHAGE_Rhodob_RcapNL: hypothetical protein; Pden_0984; phage(gi461474958) | 2e-23 | Click |
| 5 | 966075..966425 | PHAGE_Rhodob_RcapNL: HNH endonuclease; Pden_0985; phage(gi461474959) | 3e-29 | Click |
| 6 | 966475..966735 | hypothetical protein; Pden_0986 | N/A | Click |
| 7 | 966910..967413 | PHAGE_Rhodob_RcapNL: hypothetical protein; Pden_0987; phage(gi461474960) | 2e-33 | Click |
| 8 | 967403..969124 | PHAGE_Burkho_Bcep176: gp79; Pden_0988; phage(gi77864705) | 2e-118 | Click |
| 9 | 969124..970461 | PHAGE_Tetras_SI1: portal protein; Pden_0989; phage(gi472342257) | 4e-81 | Click |
| 10 | 970448..971290 | PHAGE_Entero_mEp235: head maturation protease; Pden_0990; phage(gi428781814) | 5e-71 | Click |
| 11 | 971302..972651 | PHAGE_Pseudo_vB_PaeS_PMG1: major capsid protein; Pden_0991; phage(gi374531651) | 6e-84 | Click |
| 12 | 972709..973017 | hypothetical protein; Pden_0992 | N/A | Click |
| 13 | 973059..973553 | PHAGE_Tetras_SI1: hypothetical protein; Pden_0993; phage(gi472342253) | 9e-29 | Click |
| 14 | 973522..974070 | hypothetical protein; Pden_0994 | N/A | Click |
| 15 | 974064..974414 | PHAGE_Rhizob_3: p010; Pden_0995; phage(gi195546541) | 4e-10 | Click |
| 16 | 974411..974818 | PHAGE_Rhodob_RcapNL: gene transfer agent (GTA) orfg8-like protein; Pden_0996; phage(gi461474971) | 7e-06 | Click |
| 17 | 975002..975460 | PHAGE_Rhizob_3: p011; Pden_0997; phage(gi195546542) | 1e-18 | Click |
| 18 | 975521..975982 | PHAGE_Rhizob_3: p014; Pden_0998; phage(gi195546545) | 4e-06 | Click |
| 19 | 975982..976437 | PHAGE_Rhizob_3: p015; Pden_0999; phage(gi195546546) | 9e-09 | Click |
| 20 | 976763..979738 | PHAGE_Entero_HK542: tail length tape measure protein; Pden_1000; phage(gi428783358) | 1e-36 | Click |
| 21 | 979738..980418 | PHAGE_Rhizob_3: p018; Pden_1001; phage(gi195546549) | 1e-09 | Click |
| 22 | 980415..980981 | hypothetical protein; Pden_1002 | N/A | Click |
| 23 | 980966..981337 | PHAGE_Rhizob_3: p021; Pden_1003; phage(gi195546552) | 5e-08 | Click |
| 24 | 981337..983379 | PHAGE_Rhodob_RcapNL: phage tail component protein; Pden_1004; phage(gi461474981) | 9e-15 | Click |
| 25 | 983443..983823 | hypothetical protein; Pden_1005 | N/A | Click |
| 26 | complement(983811..984200) | PROPHAGE_Brucel_1330: IS5 family transposase orfB; Pden_1006; phage(gi23501423) | 5e-27 | Click |
| 27 | complement(984197..984568) | PROPHAGE_Brucel_1330: IS5 family transposase orfA; Pden_1007; phage(gi23501422) | 1e-34 | Click |
Region 4, total : 17 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(2063766..2065175) | PHAGE_Xylell_Xfas53: DNA injection protein; Pden_2056; phage(gi273810459) | 7e-11 | Click |
| 2 | 2065343..2065744 | hypothetical protein; Pden_2057 | N/A | Click |
| 3 | complement(2065737..2066510) | hypothetical protein; Pden_2058 | N/A | Click |
| 4 | complement(2066523..2066894) | PROPHAGE_Brucel_1330: IS5 family transposase orfA; Pden_2059; phage(gi23501422) | 1e-34 | Click |
| 5 | 2067123..2067452 | HNH endonuclease; Pden_2060 | N/A | Click |
| 6 | complement(2067435..2068970) | PHAGE_Thermu_26: C5 cytosine-specific DNA methylase; Pden_2061; phage(gi157265426) | 2e-12 | Click |
| 7 | 2069038..2069502 | PHAGE_Burkho_KL3: gp46; Pden_2062; phage(gi327198091) | 4e-39 | Click |
| 8 | complement(2069678..2070169) | PHAGE_Klebsi_phiKO2: putative large terminase subunit; Pden_2063; phage(gi46402088) | 2e-31 | Click |
| 9 | complement(2070153..2070623) | PHAGE_Burkho_2: gp1, phage terminase, small subunit, P27 family; Pden_2064; phage(gi134288627) | 2e-15 | Click |
| 10 | 2070830..2071036 | PHAGE_Lactoc_bIL312: Csp; Pden_2065; phage(gi13095918) | 2e-13 | Click |
| 11 | 2071116..2071421 | hypothetical protein; Pden_2066 | N/A | Click |
| 12 | complement(2071691..2071915) | PHAGE_Xantho_Xp10: hypothetical protein Xp10p34; Pden_2067; phage(gi32128446) | 8e-07 | Click |
| 13 | complement(2071912..2073303) | PHAGE_Psychr_pOW20_A: DNA methylase; Pden_2068; phage(gi472339820) | 3e-65 | Click |
| 14 | complement(2073402..2073797) | PHAGE_Bacill_phi105: hypothetical protein phi105_50; Pden_2069; phage(gi22855043) | 1e-25 | Click |
| 15 | complement(2073885..2074262) | hypothetical protein; Pden_2070 | N/A | Click |
| 16 | complement(2074255..2074743) | hypothetical protein; Pden_2071 | N/A | Click |
| 17 | complement(2074747..2076405) | PHAGE_Macaci_4: LF3; Pden_2072; phage(gi51518075) | 2e-07 | Click |