Definition Lactobacillus casei ATCC 334, complete genome.
Accession NC_008526
Length 2,895,264
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 7 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(410040..411851)  PHAGE_Bacill_SPBc2: ABC transporter; LSEI_0407; phage(gi9630145)  9e-40  Click
2 complement(411844..413469)  PHAGE_Bacill_SPBc2: ABC transporter; LSEI_0408; phage(gi9630145)  8e-21  Click
3 414099..414191  holin-like toxin; LSEI_0409  N/A  Click
4 complement(414522..417254)  PHAGE_Strept_2: tail protein; LSEI_0410; phage(gi273809743)  4e-08  Click
5 417812..418678  ABC-type metal ion transport system, periplasmic component/surface antigen; LSEI_0411  N/A  Click
6 418835..419821  PHAGE_Acanth_1: hypothetical protein ATCV1_Z177L; LSEI_0412; phage(gi155371124)  1e-17  Click
7 complement(419774..421375)  PROPHAGE_Escher_MG1655: IS150 transposase B; LSEI_0413; phage(gi16131429)  9e-55  Click
Region 2, total : 50 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 497885..498814  PHAGE_Lactoc_P087: putative cysteine synthase; LSEI_0480; phage(gi229605000)  9e-90  Click
2 complement(499004..499246)  hypothetical protein; LSEI_0481  N/A  Click
3 499316..499591  PHAGE_Lactob_phiAT3: putative transposase A; LSEI_0482; phage(gi48697273)  5e-08  Click
4 499621..500451  PHAGE_Lactob_phiAT3: putative transposase B; LSEI_0483; phage(gi48697274)  3e-28  Click
5 complement(500570..500938)  hypothetical protein; LSEI_0484  N/A  Click
6 501060..501131  tRNA  N/A  Click
7 501215..501226  attL    ACTTTGTTTTTA  N/A  Click
8 complement(501259..502428)  PHAGE_Lactob_phiAT3: putative integrase; LSEI_0486; phage(gi48697280)  0.0  Click
9 complement(502541..502801)  PHAGE_Lactob_phiAT3: hypothetical protein phiAT3gORF33; LSEI_0487; phage(gi48697293)  2e-10  Click
10 502891..503511  hypothetical protein; LSEI_0488  N/A  Click
11 complement(503495..503731)  hypothetical protein; LSEI_0489  N/A  Click
12 complement(503732..503839)  hypothetical protein; LSEI_0490  N/A  Click
13 complement(503924..504631)  PHAGE_Lister_A118: gp34; LSEI_0491; phage(gi16798817)  5e-07  Click
14 complement(504790..505212)  PHAGE_Lactob_Lj928: hypothetical protein Ljo_1458; LSEI_0492; phage(gi41179295)  3e-12  Click
15 complement(505205..505558)  PHAGE_Entero_phiFL3A: CI phage repressor protein; LSEI_0493; phage(gi281416216)  1e-17  Click
16 505802..506050  hypothetical protein; LSEI_0494  N/A  Click
17 506092..506292  hypothetical protein; LSEI_0495  N/A  Click
18 complement(506263..507096)  hypothetical protein; LSEI_0496  N/A  Click
19 507157..507915  PHAGE_Lactoc_bIL285: anti-repressor; LSEI_0497; phage(gi13095686)  7e-42  Click
20 507916..508095  hypothetical protein; LSEI_0498  N/A  Click
21 complement(508088..508339)  hypothetical protein; LSEI_0499  N/A  Click
22 508405..508761  PHAGE_Lactob_phiAT3: hypothetical protein phiAT3gORF25; LSEI_0500; phage(gi48697285)  1e-63  Click
23 508761..508853  hypothetical protein; LSEI_0501  N/A  Click
24 508846..509049  hypothetical protein; LSEI_0502  N/A  Click
25 complement(509032..509577)  hypothetical protein; LSEI_0503  N/A  Click
26 509758..509976  hypothetical protein; LSEI_0504  N/A  Click
27 complement(509992..510651)  PHAGE_Staphy_phiPV83: transposase; LSEI_0505; phage(gi9635740)  2e-29  Click
28 511011..511127  hypothetical protein; LSEI_0506  N/A  Click
29 511120..511866  PHAGE_Lactob_c5: putative DNA replication protein; LSEI_0507; phage(gi418488187)  1e-29  Click
30 511881..512705  PHAGE_Lactoc_r1t: putative replication protein DnaC; LSEI_0508; phage(gi23455731)  3e-15  Click
31 512705..513223  DNA polymerase III, epsilon subunit related 3'-5' exonuclease; LSEI_0509  N/A  Click
32 513270..513692  PHAGE_Strept_phiNJ2: hypothetical protein; LSEI_0510; phage(gi414090240)  4e-18  Click
33 513694..514431  PHAGE_Clostr_phiCD38_2: hypothetical protein; LSEI_0511; phage(gi333798150)  3e-39  Click
34 514443..514730  PHAGE_Lactob_A2: hypothetical protein A2p52; LSEI_0512; phage(gi22296571)  3e-40  Click
35 514800..515132  hypothetical protein; LSEI_0513  N/A  Click
36 515647..516090  PHAGE_Lactob_phiAT3: hypothetical protein phiAT3gORF47; LSEI_0514; phage(gi48697307)  6e-47  Click
37 516604..517257  hypothetical protein; LSEI_0515  N/A  Click
38 517508..518506  PHAGE_Staphy_phiPV83: transposase; LSEI_0516; phage(gi9635740)  1e-56  Click
39 complement(518702..518920)  PHAGE_Lactob_LF1: hypothetical protein; LSEI_0517; phage(gi418489439)  2e-20  Click
40 519343..520173  PHAGE_Lactob_phiAT3: hypothetical protein phiAT3gORF50; LSEI_0518; phage(gi48697310)  3e-101  Click
41 520188..520466  PHAGE_Lactob_phiAT3: hypothetical protein phiAT3gORF50; LSEI_0519; phage(gi48697310)  2e-50  Click
42 520453..520788  PHAGE_Lactob_phiAT3: hypothetical protein phiAT3gORF52; LSEI_0520; phage(gi48697312)  2e-44  Click
43 520785..520895  hypothetical protein; LSEI_0521  N/A  Click
44 522131..522406  PHAGE_Lactob_phiAT3: putative transposase A; LSEI_0523; phage(gi48697273)  5e-08  Click
45 522436..523266  PHAGE_Lactob_phiAT3: putative transposase B; LSEI_0524; phage(gi48697274)  9e-28  Click
46 523581..523739  hypothetical protein; LSEI_0525  N/A  Click
47 523828..524226  hypothetical protein; LSEI_0526  N/A  Click
48 524238..524504  hypothetical protein; LSEI_0527  N/A  Click
49 524523..524699  hypothetical protein; LSEI_0528  N/A  Click
50 524701..524928  hypothetical protein; LSEI_0529  N/A  Click
51 524971..526212  hypothetical protein; LSEI_0530  N/A  Click
52 526190..527758  PHAGE_Achole_L2: envelope protein; LSEI_0531; phage(gi9626524)  3e-11  Click
53 534247..534258  attR    ACTTTGTTTTTA  N/A  Click
Region 3, total : 73 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1902327..1902578  PHAGE_Lactob_phiAT3: putative transposase A; LSEI_1906; phage(gi48697273)  2e-40  Click
2 1902718..1903473  PHAGE_Lactob_phiAT3: putative transposase B; LSEI_1907; phage(gi48697274)  3e-144  Click
3 1903845..1903871  attL    TACCGGTCATTCCCACTCAATCGTTGC  N/A  Click
4 complement(1904004..1904228)  hypothetical protein; LSEI_1908  N/A  Click
5 complement(1904273..1905571)  PHAGE_Lactob_Lrm1: lysin; LSEI_1909; phage(gi195661219)  0.0  Click
6 complement(1905582..1906028)  PHAGE_Lactob_Lrm1: holin; LSEI_1910; phage(gi195661218)  3e-65  Click
7 complement(1906021..1906311)  PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp17; LSEI_1911; phage(gi195661217)  1e-48  Click
8 complement(1906374..1906529)  PHAGE_Lactob_1: hypothetical protein lb338_phage_125; LSEI_1912; phage(gi226377755)  2e-10  Click
9 complement(1906544..1906879)  PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp16; LSEI_1913; phage(gi195661216)  3e-18  Click
10 complement(1906891..1910940)  PHAGE_Lactob_Lrm1: host specificity protein; LSEI_1914; phage(gi195661215)  0.0  Click
11 complement(1910937..1912904)  PHAGE_Lactob_Lrm1: tail component; LSEI_1915; phage(gi195661214)  4e-153  Click
12 complement(1912976..1913992)  PHAGE_Staphy_phiPV83: transposase; LSEI_1916; phage(gi9635740)  9e-36  Click
13 complement(1914099..1917434)  PHAGE_Entero_phiFL1A: PblA-like tail protein; LSEI_1917; phage(gi281416377)  1e-90  Click
14 complement(1917427..1917780)  PHAGE_Entero_phiEf11: putative phage protein; LSEI_1918; phage(gi282598753)  1e-10  Click
15 complement(1917879..1918214)  PHAGE_Entero_phiEf11: putative phage protein; LSEI_1919; phage(gi282598743)  1e-18  Click
16 complement(1918301..1918933)  PHAGE_Lactoc_ul36: major tail protein; LSEI_1920; phage(gi21716118)  7e-13  Click
17 complement(1918945..1919349)  PHAGE_Strept_858: orf15; LSEI_1921; phage(gi168229288)  8e-15  Click
18 complement(1919350..1919715)  PHAGE_Lactoc_1: ORF40; LSEI_1922; phage(gi13786571)  2e-14  Click
19 complement(1919712..1920014)  PHAGE_Entero_phiEf11: conserved hypothetical protein; LSEI_1923; phage(gi282598747)  2e-07  Click
20 complement(1920019..1920393)  PHAGE_Lactob_Lj928: hypothetical protein Ljo_1432; LSEI_1924; phage(gi41179321)  5e-16  Click
21 complement(1920729..1921748)  PHAGE_Entero_phiEf11: putative head protein; LSEI_1925; phage(gi282598750)  2e-105  Click
22 1921841..1922116  PHAGE_Lactob_phiAT3: putative transposase A; LSEI_1926; phage(gi48697273)  5e-08  Click
23 1922146..1922976  PHAGE_Lactob_phiAT3: putative transposase B; LSEI_1927; phage(gi48697274)  3e-28  Click
24 complement(1922962..1923465)  PHAGE_Entero_phiEf11: conserved hypothetical protein; LSEI_1928; phage(gi282598728)  8e-33  Click
25 complement(1923478..1924116)  PHAGE_Staphy_StB27: scaffold protein; LSEI_1929; phage(gi431809709)  4e-28  Click
26 complement(1924234..1924764)  hypothetical protein; LSEI_1930  N/A  Click
27 complement(1924761..1925087)  PHAGE_Bacill_Finn: hypothetical protein; LSEI_1931; phage(gi460042246)  3e-07  Click
28 complement(1925097..1926095)  PHAGE_Lactob_Lj928: hypothetical protein Ljo_1437; LSEI_1932; phage(gi41179316)  5e-53  Click
29 complement(1926061..1927488)  PHAGE_Lactoc_ul36: putative portal protein; LSEI_1933; phage(gi21716109)  1e-82  Click
30 complement(1927493..1928746)  PHAGE_Lactob_Lj965: putative terminase large subunit; LSEI_1934; phage(gi41179257)  2e-154  Click
31 complement(1928730..1929302)  PHAGE_Lactob_phig1e: putative terminase small subunit; LSEI_1935; phage(gi23455798)  3e-34  Click
32 complement(1929371..1929505)  hypothetical protein; LSEI_1936  N/A  Click
33 complement(1929688..1930836)  PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp50; LSEI_1937; phage(gi195661250)  0.0  Click
34 1931030..1931251  PHAGE_Strept_PH15: hypothetical protein phiPH15_gp09; LSEI_1938; phage(gi190151424)  6e-05  Click
35 complement(1931444..1932091)  hypothetical protein; LSEI_1939  N/A  Click
36 complement(1932400..1932828)  PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp49; LSEI_1940; phage(gi195661249)  9e-76  Click
37 1933029..1933301  hypothetical protein; LSEI_1941  N/A  Click
38 complement(1933343..1933561)  PHAGE_Lactob_Nu: putative transcription regulator; LSEI_1942; phage(gi78000017)  1e-31  Click
39 complement(1933574..1933642)  hypothetical protein; LSEI_1943  N/A  Click
40 complement(1933639..1934139)  PHAGE_Lactob_1: hypothetical protein lb338_phage_177; LSEI_1944; phage(gi226377807)  7e-40  Click
41 complement(1934150..1934380)  PHAGE_Lactob_A2: hypothetical protein A2p49; LSEI_1945; phage(gi22296568)  8e-22  Click
42 complement(1934377..1934787)  PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp47; LSEI_1946; phage(gi195661247)  2e-38  Click
43 complement(1934784..1934963)  hypothetical protein; LSEI_1947  N/A  Click
44 complement(1934956..1935282)  hypothetical protein; LSEI_1948  N/A  Click
45 complement(1935272..1935823)  PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp44; LSEI_1949; phage(gi195661244)  3e-31  Click
46 complement(1935820..1936059)  PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp42; LSEI_1950; phage(gi195661242)  7e-14  Click
47 complement(1936072..1936437)  PHAGE_Lister_A118: gp63; LSEI_1951; phage(gi16798850)  3e-24  Click
48 complement(1936434..1936688)  PHAGE_Lactob_Nu: hypothetical protein; LSEI_1952; phage(gi78000011)  5e-36  Click
49 complement(1936689..1937018)  PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp38; LSEI_1953; phage(gi195661238)  4e-29  Click
50 complement(1937015..1937797)  PHAGE_Lactob_Lrm1: DNA replication protein; LSEI_1954; phage(gi195661237)  9e-133  Click
51 complement(1937784..1938584)  PHAGE_Entero_EF62phi: dD and phage-associated domain protein; LSEI_1955; phage(gi384519772)  2e-23  Click
52 complement(1938651..1939211)  PHAGE_Lactob_Lrm1: SSB protein; LSEI_1956; phage(gi195661235)  2e-07  Click
53 complement(1939214..1940137)  PHAGE_Bacill_phi105: hypothetical protein phi105_39; LSEI_1957; phage(gi22855032)  8e-57  Click
54 complement(1940134..1940754)  PHAGE_Lactob_Sha1: phage protein; LSEI_1958; phage(gi418489843)  1e-21  Click
55 complement(1940751..1940918)  hypothetical protein; LSEI_1959  N/A  Click
56 complement(1940911..1941162)  hypothetical protein; LSEI_1960  N/A  Click
57 complement(1941150..1941278)  hypothetical protein; LSEI_1961  N/A  Click
58 complement(1941291..1941500)  hypothetical protein; LSEI_1962  N/A  Click
59 complement(1941506..1942012)  hypothetical protein; LSEI_1963  N/A  Click
60 complement(1942070..1942228)  hypothetical protein; LSEI_1964  N/A  Click
61 1942316..1942804  hypothetical protein; LSEI_1965  N/A  Click
62 complement(1942764..1943006)  hypothetical protein; LSEI_1966  N/A  Click
63 complement(1943003..1943248)  PHAGE_Bacill_1: Predicted transcription regulator; LSEI_1967; phage(gi158348425)  2e-06  Click
64 1943378..1944061  PHAGE_Staphy_2638A: ORF016; LSEI_1968; phage(gi66395466)  5e-18  Click
65 1944077..1944925  hypothetical protein; LSEI_1969  N/A  Click
66 1944984..1945589  PHAGE_Brocho_BL3: gp30; LSEI_1970; phage(gi327409422)  3e-43  Click
67 1945690..1946460  PHAGE_Lactob_LF1: hypothetical protein; LSEI_1971; phage(gi418489416)  5e-20  Click
68 complement(1946437..1946592)  hypothetical protein; LSEI_1972  N/A  Click
69 1946729..1947154  hypothetical protein; LSEI_1973  N/A  Click
70 1947178..1947381  hypothetical protein; LSEI_1974  N/A  Click
71 1947436..1948278  PHAGE_Lactob_LF1: chromosome partitioning ATPase; LSEI_1975; phage(gi418489414)  1e-30  Click
72 1948295..1948690  hypothetical protein; LSEI_1976  N/A  Click
73 1948695..1949351  hypothetical protein; LSEI_1977  N/A  Click
74 1949483..1950646  PHAGE_Strept_5: putative phage integrase; LSEI_1978; phage(gi28876436)  3e-42  Click
75 1950805..1950831  attR    TACCGGTCATTCCCACTCAATCGTTGC  N/A  Click