Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 39 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2023987..2023998  attL    AAAAGGGGGTAT  N/A  Click
2 2024037..2025281  PROPHAGE_Escher_CFT073: putative prophage integrase; Bamb_1839; phage(gi26250313)  3e-78  Click
3 2025495..2027015  hypothetical protein; Bamb_1840  N/A  Click
4 2027012..2028304  hypothetical protein; Bamb_1841  N/A  Click
5 2028310..2029467  adenine-specific DNA methylase-like protein; Bamb_1842  N/A  Click
6 complement(2029611..2030315)  PHAGE_Burkho_phiE125: hypothetical protein phiE125p33; Bamb_1843; phage(gi17975194)  3e-87  Click
7 2030369..2030860  PHAGE_Burkho_KS9: hypothetical protein gp27; Bamb_1844; phage(gi255033759)  1e-69  Click
8 2031059..2031466  PHAGE_Ralsto_phiRSA1: putative bacteriophage gp29 protein; Bamb_1845; phage(gi145708075)  5e-20  Click
9 2031471..2031974  PHAGE_Ralsto_phiRSA1: hypothetical protein RPRSA1_gp02; Bamb_1846; phage(gi145708076)  1e-22  Click
10 2031967..2032446  hypothetical protein; Bamb_1847  N/A  Click
11 2032541..2032909  PHAGE_Ralsto_phiRSA1: hypothetical protein RPRSA1_gp03; Bamb_1848; phage(gi145708077)  4e-08  Click
12 2032915..2033649  PHAGE_Ralsto_phiRSA1: hypothetical protein RPRSA1_gp04; Bamb_1849; phage(gi145708078)  5e-35  Click
13 complement(2033689..2034477)  PHAGE_Burkho_phiE125: DNA adenine methylase; Bamb_1850; phage(gi17975188)  3e-143  Click
14 2034665..2035207  hypothetical protein; Bamb_1851  N/A  Click
15 complement(2035138..2035590)  PHAGE_Burkho_BcepC6B: putative endolysin protein; Bamb_1852; phage(gi48697212)  2e-71  Click
16 complement(2035635..2035919)  PHAGE_Burkho_KS9: holin gp22; Bamb_1853; phage(gi255033753)  1e-43  Click
17 complement(2035998..2037047)  PHAGE_Vibrio_vB_VpaM_MAR: putative tail protein; Bamb_1854; phage(gi428782753)  1e-46  Click
18 complement(2037057..2037263)  PHAGE_Salmon_RE_2010: tail component protein; Bamb_1855; phage(gi418489702)  6e-09  Click
19 complement(2037238..2038116)  PHAGE_Vibrio_vB_VpaM_MAR: putative tail protein; Bamb_1856; phage(gi428782751)  2e-14  Click
20 complement(2038128..2040572)  PHAGE_Haemop_SuMu: bacteriophage tail length determination protein; Bamb_1857; phage(gi418489066)  2e-22  Click
21 complement(2040653..2040955)  hypothetical protein; Bamb_1858  N/A  Click
22 complement(2041053..2041556)  PHAGE_Vibrio_vB_VpaM_MAR: tail tube protein; Bamb_1859; phage(gi428782747)  2e-28  Click
23 complement(2041567..2042736)  PHAGE_Vibrio_vB_VpaM_MAR: tail sheath protein; Bamb_1860; phage(gi428782746)  6e-81  Click
24 complement(2042816..2043577)  PHAGE_Burkho_KS5: gp22; Bamb_1861; phage(gi327198020)  1e-58  Click
25 complement(2043591..2045798)  PHAGE_Burkho_KL3: gp23; Bamb_1862; phage(gi327198068)  5e-99  Click
26 complement(2045786..2046364)  PHAGE_Burkho_phiE255: gp25, tail fiber; Bamb_1863; phage(gi134288819)  8e-31  Click
27 complement(2046354..2047250)  PHAGE_Ralsto_phiRSA1: baseplate J-like protein; Bamb_1864; phage(gi145708095)  5e-50  Click
28 complement(2047247..2047582)  PHAGE_Vibrio_vB_VpaM_MAR: baseplate assembly protein; Bamb_1865; phage(gi428782737)  4e-14  Click
29 complement(2047582..2047782)  hypothetical protein; Bamb_1866  N/A  Click
30 2047843..2048709  hypothetical protein; Bamb_1867  N/A  Click
31 complement(2048693..2049373)  PHAGE_Burkho_2: gp39, phage baseplate assembly protein; Bamb_1868; phage(gi134288696)  3e-24  Click
32 complement(2049377..2049901)  hypothetical protein; Bamb_1869  N/A  Click
33 complement(2049891..2050421)  PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; Bamb_1870; phage(gi428782733)  1e-18  Click
34 complement(2050424..2050714)  hypothetical protein; Bamb_1871  N/A  Click
35 complement(2050716..2051711)  PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; Bamb_1872; phage(gi428782731)  6e-45  Click
36 complement(2051796..2052140)  PHAGE_Strept_VWB: ORFp14; Bamb_1873; phage(gi41057253)  1e-06  Click
37 complement(2052171..2053256)  PHAGE_Entero_mEp213: head maturation protease; Bamb_1874; phage(gi428782594)  4e-44  Click
38 complement(2053258..2054745)  PHAGE_Vibrio_vB_VpaM_MAR: portal protein; Bamb_1875; phage(gi428782728)  1e-81  Click
39 complement(2054742..2054948)  hypothetical protein; Bamb_1876  N/A  Click
40 complement(2054958..2056946)  PHAGE_Vibrio_vB_VpaM_MAR: terminase large subunit; Bamb_1877; phage(gi428782726)  2e-39  Click
41 2070156..2070167  attR    AAAAGGGGGTAT  N/A  Click
Region 2, total : 19 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2649212..2649227  attL    GGGGTTGTTTTGGGGG  N/A  Click
2 2649273..2650487  PROPHAGE_Escher_Sakai: putative integrase; Bamb_2400; phage(gi15833788)  1e-92  Click
3 2650535..2651098  helix-turn-helix, Fis-type; Bamb_2401  N/A  Click
4 2651151..2651411  prophage CP4-57 regulatory; Bamb_2402  N/A  Click
5 2651415..2651735  hypothetical protein; Bamb_2403  N/A  Click
6 2651886..2652149  hypothetical protein; Bamb_2404  N/A  Click
7 2652788..2653000  hypothetical protein; Bamb_2405  N/A  Click
8 2653394..2655787  PHAGE_Salico_CGphi29: hypothetical protein; Bamb_2406; phage(gi472340164)  2e-28  Click
9 2655784..2656272  hypothetical protein; Bamb_2407  N/A  Click
10 2656394..2656768  hypothetical protein; Bamb_2408  N/A  Click
11 2656758..2657462  hypothetical protein; Bamb_2409  N/A  Click
12 2657604..2658557  hypothetical protein; Bamb_2410  N/A  Click
13 2658677..2660230  PHAGE_Burkho_BcepB1A: gp14 T; Bamb_2411; phage(gi72257065)  1e-09  Click
14 2660379..2662031  PHAGE_Burkho_BcepC6B: putative tail fiber protein; Bamb_2412; phage(gi48697208)  8e-54  Click
15 2662028..2663221  PHAGE_Burkho_BcepC6B: hypothetical membrane-localized protein; Bamb_2413; phage(gi48697209)  3e-47  Click
16 2663267..2664343  PROPHAGE_Pseudo_PAO1: bacteriophage integrase; Bamb_2414; phage(gi15595925)  9e-10  Click
17 2664752..2665318  hypothetical protein; Bamb_2415  N/A  Click
18 2665358..2665434  tRNA  N/A  Click
19 2665555..2665815  PHAGE_Burkho_AH2: excisionase; Bamb_2416; phage(gi399529070)  2e-26  Click
20 2665974..2666234  PHAGE_Burkho_AH2: excisionase; Bamb_2417; phage(gi399529070)  1e-24  Click
21 2666377..2667381  PHAGE_Methan_psiM100: hypothetical protein psiM100p09; Bamb_2418; phage(gi11863094)  6e-08  Click
22 2669708..2669723  attR    GGGGTTGTTTTGGGGG  N/A  Click
Region 3, total : 13 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2669603..2669614  attL    ATGAAGCCGAGC  N/A  Click
2 2669954..2671168  PROPHAGE_Escher_CFT073: putative prophage integrase; Bamb_2421; phage(gi26250313)  2e-95  Click
3 complement(2671222..2672025)  hypothetical protein; Bamb_2422  N/A  Click
4 complement(2672724..2673128)  hypothetical protein; Bamb_2423  N/A  Click
5 complement(2673128..2673391)  hypothetical protein; Bamb_2424  N/A  Click
6 complement(2673505..2674401)  hypothetical protein; Bamb_2425  N/A  Click
7 complement(2674550..2675602)  hypothetical protein; Bamb_2426  N/A  Click
8 2675840..2676421  PHAGE_Burkho_KS14: gp6; Bamb_2427; phage(gi327198275)  1e-24  Click
9 2676502..2677359  PHAGE_Staphy_phiPVL108: hypothetical protein SABPV108_gp21; Bamb_2428; phage(gi119443673)  6e-13  Click
10 2678218..2678294  tRNA  N/A  Click
11 complement(2678370..2679488)  PHAGE_Cronob_vB_CsaM_GAP32: long tail fiber proximal subunit; Bamb_2429; phage(gi414087138)  4e-05  Click
12 complement(2680010..2680750)  PHAGE_Tricho_2c: hypothetical protein TNAV2c_gp071; Bamb_2430; phage(gi116326757)  2e-21  Click
13 2680866..2681480  TetR family transcriptional regulator; Bamb_2431  N/A  Click
14 complement(2681560..2682060)  PROPHAGE_Escher_MG1655: ecotin, a serine protease inhibitor; Bamb_2432; phage(gi16130146)  6e-33  Click
15 2682205..2682537  PHAGE_Macaci_4: LMP1; Bamb_2433; phage(gi51518089)  5e-06  Click
16 2691744..2691755  attR    ATGAAGCCGAGC  N/A  Click