Definition Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence.
Accession NC_008269
Length 1,123,075
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 25 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 452661..452672  attL    CCGAGGCGGCCG  N/A  Click
2 457645..458877  PHAGE_Entero_P2: Int; RHA1_ro08484; phage(gi9630357)  7e-06  Click
3 458874..459809  PHAGE_Mycoba_BPs: integrase; RHA1_ro08485; phage(gi189043119)  4e-08  Click
4 459806..461125  PHAGE_Mycoba_Porky: gp51; RHA1_ro08486; phage(gi194303347)  9e-10  Click
5 complement(461128..462393)  PROPHAGE_Escher_CFT073: transposase; RHA1_ro08487; phage(gi26246249)  5e-89  Click
6 complement(462442..463035)  hypothetical protein; RHA1_ro08488  N/A  Click
7 complement(463124..463465)  sigma factor, includes region 4; RHA1_ro08489  N/A  Click
8 463583..464122  helicase; RHA1_ro08490  N/A  Click
9 complement(464238..464951)  hypothetical protein; RHA1_ro08491  N/A  Click
10 465715..466113  hypothetical protein; RHA1_ro08492  N/A  Click
11 466358..466849  hypothetical protein; RHA1_ro08493  N/A  Click
12 complement(466962..467864)  PROPHAGE_Pseudo_KT2440: transposase, putative; RHA1_ro08494; phage(gi26991145)  5e-87  Click
13 complement(468196..469635)  PROPHAGE_Xantho_33913: IS1478 transposase; RHA1_ro08495; phage(gi77747808)  3e-17  Click
14 complement(470166..470411)  PHAGE_Rhodoc_REQ2: hypothetical protein; RHA1_ro08496; phage(gi372449852)  4e-06  Click
15 470724..471014  hypothetical protein; RHA1_ro08497  N/A  Click
16 471401..471715  ATP-dependent DNA ligase; RHA1_ro08498  N/A  Click
17 complement(471998..472750)  PHAGE_Bacill_SPBc2: hypothetical protein SPBc2p118; RHA1_ro08499; phage(gi9630243)  1e-40  Click
18 complement(472803..473150)  PHAGE_Mycoba_Kostya: gp39; RHA1_ro08500; phage(gi194303092)  6e-10  Click
19 complement(473366..473758)  hypothetical protein; RHA1_ro08501  N/A  Click
20 473830..474972  PROPHAGE_Mesorh_MAFF303099: transposase; RHA1_ro08502; phage(gi13475318)  6e-25  Click
21 complement(475407..476207)  PHAGE_Tricho_2c: hypothetical protein TNAV2c_gp071; RHA1_ro08503; phage(gi116326757)  1e-21  Click
22 complement(476233..477255)  sugar ABC transporter substrate-binding protein; RHA1_ro08504  N/A  Click
23 complement(477252..478265)  PHAGE_Lactob_KC5a: putative minor tail protein; RHA1_ro08505; phage(gi90592623)  4e-09  Click
24 complement(478262..479260)  PHAGE_Strept_2972: tail protein; RHA1_ro08506; phage(gi66391777)  7e-06  Click
25 complement(479253..480806)  PHAGE_Plankt_PaV_LD: ABC transporter; RHA1_ro08507; phage(gi371496158)  4e-15  Click
26 481046..481057  attR    CCGAGGCGGCCG  N/A  Click
27 complement(481063..481845)  PHAGE_Tricho_2c: hypothetical protein TNAV2c_gp071; RHA1_ro08508; phage(gi116326757)  9e-16  Click
Region 2, total : 15 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 570289..570300  attL    TGAGGAGGTGCC  N/A  Click
2 582061..583260  PHAGE_Entero_P1: Cre; RHA1_ro08606; phage(gi46401628)  3e-06  Click
3 583510..584616  hypothetical protein; RHA1_ro08607  N/A  Click
4 complement(584906..585412)  helicase; RHA1_ro08608  N/A  Click
5 586055..586396  PHAGE_Mycoba_LeBron: gp33; RHA1_ro08609; phage(gi304360982)  2e-13  Click
6 complement(586478..586795)  integration host factor; RHA1_ro08610  N/A  Click
7 complement(588096..588926)  PROPHAGE_Shewan_MR-1: ISSod6, transposase; RHA1_ro08611; phage(gi24374783)  5e-18  Click
8 complement(589036..589572)  TetR family transcriptional regulator; RHA1_ro08612  N/A  Click
9 590613..592460  PHAGE_Lactoc_Q54: putative ribonuclease; RHA1_ro08613; phage(gi115304286)  3e-10  Click
10 592861..593124  hypothetical protein; RHA1_ro08614  N/A  Click
11 complement(593371..594018)  DNA hydrolase; RHA1_ro08615  N/A  Click
12 complement(594026..595318)  PHAGE_Mycoba_Spud: gp256; RHA1_ro08616; phage(gi203460741)  3e-65  Click
13 complement(595408..596394)  PHAGE_Mycoba_Spud: gp254; RHA1_ro08617; phage(gi203460739)  2e-60  Click
14 complement(596401..597489)  PHAGE_Mycoba_ScottMcG: gp252; RHA1_ro08618; phage(gi203459093)  3e-29  Click
15 597844..598047  PHAGE_Lactoc_bIL312: Csp; RHA1_ro08619; phage(gi13095918)  5e-17  Click
16 complement(598400..599716)  PHAGE_Mycoba_Spud: gp193; RHA1_ro08620; phage(gi203460680)  1e-08  Click
17 600035..600046  attR    TGAGGAGGTGCC  N/A  Click