Definition Yersinia pestis Antiqua chromosome, complete genome.
Accession NC_008150
Length 4,702,289
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 8 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(2525..3991)  PHAGE_Bacill_36: putative metalloprotein chaperonin subunit; YPA_0004; phage(gi156564046)  1e-06  Click
2 complement(3995..5482)  PHAGE_Acidia_virus: hypothetical protein ATV_gp66; YPA_0005; phage(gi75750456)  6e-13  Click
3 5552..6574  PROPHAGE_Escher_CFT073: transposase; YPA_0006; phage(gi26248360)  0.0  Click
4 6574..7353  PHAGE_Pseudo_F10: DNA replication protein DnaC; YPA_0007; phage(gi148912818)  2e-11  Click
5 complement(7397..7507)  hypothetical protein; YPA_0008  N/A  Click
6 7781..9649  PHAGE_Parame_FR483: hypothetical protein FR483_N110R; YPA_0009; phage(gi155370208)  3e-76  Click
7 9854..10273  D-ribose pyranase; YPA_0010  N/A  Click
8 10324..11250  PHAGE_Synech_S_SSM7: putative carbohydrate kinase; YPA_0011; phage(gi326783786)  5e-06  Click
Region 2, total : 16 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1101533..1101823  PHAGE_Salmon_SPN3UB: hypothetical protein; YPA_0953; phage(gi423262443)  7e-16  Click
2 1101839..1102486  putative ATP-binding protein; YPA_0954  N/A  Click
3 1102491..1102685  PHAGE_Entero_SfV: hypothetical protein SfVp10; YPA_0955; phage(gi19549000)  1e-06  Click
4 1102682..1104190  PHAGE_Entero_SfV: tail sheath protein; YPA_0956; phage(gi19549001)  4e-107  Click
5 1104212..1104580  PHAGE_Entero_SfV: hypothetical protein SfVp12; YPA_0957; phage(gi19549002)  2e-10  Click
6 1104582..1104881  hypothetical protein; YPA_0958  N/A  Click
7 1105002..1106495  putative bacteriophage coat protein; YPA_0959  N/A  Click
8 1106762..1108168  PHAGE_Entero_SfV: tail/DNA circulation protein; YPA_0960; phage(gi19549005)  3e-20  Click
9 1108165..1109220  PHAGE_Entero_SfV: tail protein; YPA_0961; phage(gi19549006)  3e-32  Click
10 1109236..1109832  PHAGE_Entero_SfV: tail protein; YPA_0962; phage(gi19549007)  2e-17  Click
11 1109829..1110284  PHAGE_Entero_SfV: tail protein; YPA_0963; phage(gi19549008)  5e-14  Click
12 1110288..1111424  PHAGE_Entero_SfV: tail protein; YPA_0964; phage(gi19549009)  8e-33  Click
13 1111421..1111681  PHAGE_Salmon_ST64B: putative tail protein; YPA_0965; phage(gi23505467)  5e-05  Click
14 1111621..1112025  PHAGE_Entero_SfV: tail protein; YPA_0966; phage(gi19548988)  4e-11  Click
15 1112122..1112901  PHAGE_Entero_HK97: tail fiber; YPA_0967; phage(gi9634179)  8e-54  Click
16 1113199..1113939  PHAGE_Acanth_moumouvirus: putative glucosamine-fructose-6-phosphate aminotransferase; YPA_0968; phage(gi441432573)  3e-05  Click
Region 3, total : 19 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1394437..1394449  attL    TGTTTTTTTTAGG  N/A  Click
2 complement(1398705..1399262)  PHAGE_Pectob_ZF40: putative integrase; YPA_1246; phage(gi422936642)  2e-69  Click
3 1399331..1399558  PHAGE_Salmon_SPN9CC: replicative DNA helicase; YPA_1247; phage(gi389060513)  2e-14  Click
4 complement(1400895..1401056)  hypothetical protein; YPA_1248  N/A  Click
5 complement(1401082..1401426)  hypothetical protein; YPA_1249  N/A  Click
6 complement(1401646..1402605)  PHAGE_Lactob_phiAT3: putative transposase B; YPA_1250; phage(gi48697274)  6e-15  Click
7 complement(1402677..1403096)  hypothetical protein; YPA_1251  N/A  Click
8 complement(1403207..1403347)  PHAGE_Entero_PsP3: gp21; YPA_1252; phage(gi41057373)  1e-13  Click
9 complement(1403771..1404076)  hypothetical protein; YPA_1253  N/A  Click
10 complement(1404723..1405010)  PHAGE_Aeromo_vB_AsaM_56: putative tail-fiber protein; YPA_1254; phage(gi422937565)  7e-06  Click
11 complement(1405027..1405326)  PHAGE_Entero_PsP3: gp16; YPA_1255; phage(gi41057368)  8e-25  Click
12 complement(1405323..1405682)  PHAGE_Entero_PsP3: gp15; YPA_1256; phage(gi41057367)  9e-19  Click
13 1405713..1405985  PHAGE_Burkho_phiE202: gp6, pANL56; YPA_1257; phage(gi134288760)  2e-12  Click
14 1405966..1406256  PHAGE_Burkho_phiE202: gp7, pANL12; YPA_1258; phage(gi134288781)  3e-07  Click
15 1406322..1407398  hypothetical protein; YPA_1259  N/A  Click
16 1407446..1408306  PROPHAGE_Escher_CFT073: transposase; YPA_1260; phage(gi26246249)  3e-139  Click
17 1408306..1408644  PROPHAGE_Escher_CFT073: transposase; YPA_1261; phage(gi26246249)  2e-56  Click
18 complement(1409062..1409631)  hypothetical protein; YPA_1262  N/A  Click
19 complement(1409643..1410077)  hypothetical protein; YPA_1263  N/A  Click
20 1410495..1410701  PHAGE_Entero_Sf6: putative transposase OrfB; YPA_1264; phage(gi41057343)  1e-22  Click
21 1423626..1423638  attR    TGTTTTTTTTAGG  N/A  Click
Region 4, total : 33 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1647984..1648014  attL    ATATTGAATAAGCCGAGTTGGGCTAAATAAC  N/A  Click
2 complement(1648040..1649278)  PHAGE_Salmon_1: putative bacteriophage integrase; YPA_1466; phage(gi169257156)  1e-125  Click
3 1649348..1650370  PROPHAGE_Escher_CFT073: transposase; YPA_1467; phage(gi26248360)  0.0  Click
4 1650370..1651149  PROPHAGE_Escher_CFT073: transposase/IS protein; YPA_1468; phage(gi26248359)  1e-142  Click
5 1651165..1651263  hypothetical protein; YPA_1469  N/A  Click
6 1651264..1652376  PHAGE_Cronob_phiES15: hypothetical protein; YPA_1470; phage(gi401817594)  3e-123  Click
7 1652498..1653271  PHAGE_Xantho_Xp15: putative phage structural protein; YPA_1471; phage(gi66392059)  1e-19  Click
8 1653285..1654490  PHAGE_Acinet_Bphi_B1251: major capsid protein; YPA_1472; phage(gi423262007)  1e-113  Click
9 1654490..1655020  PHAGE_Cronob_phiES15: hypothetical protein; YPA_1473; phage(gi401817598)  3e-23  Click
10 1655083..1655271  PHAGE_Salmon_SSU5: hypothetical protein; YPA_1474; phage(gi410491538)  1e-16  Click
11 1655273..1655623  PHAGE_Cronob_phiES15: putative structural protein 2; YPA_1475; phage(gi401817599)  5e-33  Click
12 1655625..1656209  PHAGE_Shigel_EP23: putative tail protein; YPA_1476; phage(gi371496282)  2e-27  Click
13 1656206..1656613  PHAGE_Cronob_phiES15: hypothetical protein; YPA_1477; phage(gi401817601)  1e-16  Click
14 1656679..1657599  PHAGE_Cronob_phiES15: putative major tail protein; YPA_1478; phage(gi401817602)  3e-75  Click
15 1657612..1657923  PHAGE_Cronob_phiES15: hypothetical protein; YPA_1479; phage(gi401817603)  9e-32  Click
16 1658232..1661735  PHAGE_Entero_mEp213: tail length tape measure protein; YPA_1480; phage(gi428782602)  5e-152  Click
17 1661738..1662079  PHAGE_Cronob_phiES15: putative minor tail protein; YPA_1481; phage(gi401817607)  2e-31  Click
18 1662385..1662843  PROPHAGE_Salmon_Ty2: transposase; YPA_1482; phage(gi29143766)  5e-84  Click
19 1662964..1663716  PHAGE_Entero_HK225: minor tail protein; YPA_1483; phage(gi428782393)  3e-101  Click
20 1663719..1664429  PHAGE_Entero_HK140: minor tail protein K; YPA_1484; phage(gi428781957)  8e-109  Click
21 1664690..1665322  hypothetical protein; YPA_1485  N/A  Click
22 complement(1665401..1665940)  PHAGE_Escher_TL_2011b: hypothetical protein; YPA_1486; phage(gi418487671)  3e-32  Click
23 1666197..1667204  PHAGE_Haemop_Aaphi23: putative antirepressor protein Ant; YPA_1487; phage(gi31544021)  4e-37  Click
24 1667303..1667854  PHAGE_Cronob_phiES15: hypothetical protein; YPA_1488; phage(gi401817606)  5e-08  Click
25 1668268..1668888  PHAGE_Entero_mEpX2: tail assembly protein; YPA_1489; phage(gi428765633)  9e-66  Click
26 1669460..1672663  PHAGE_Cronob_phiES15: putative host specificity protein; YPA_1490; phage(gi401817611)  0.0  Click
27 1672648..1673661  PHAGE_Cronob_phiES15: hypothetical protein; YPA_1491; phage(gi401817612)  7e-25  Click
28 1673678..1674595  PHAGE_Salmon_SSU5: putative phage tail fiber protein; YPA_1492; phage(gi410491431)  2e-09  Click
29 1674606..1675025  PHAGE_Bacter_2: tail fiber; YPA_1493; phage(gi212499733)  2e-10  Click
30 1675022..1675177  hypothetical protein; YPA_1494  N/A  Click
31 complement(1675246..1676454)  PROPHAGE_Escher_CFT073: transposase; YPA_1495; phage(gi26246249)  0.0  Click
32 1676645..1676675  attR    ATATTGAATAAGCCGAGTTGGGCTAAATAAC  N/A  Click
33 complement(1676759..1676995)  hypothetical protein; YPA_1496  N/A  Click
34 complement(1676970..1677932)  hypothetical protein; YPA_1497  N/A  Click
35 complement(1677936..1679135)  PHAGE_Africa_virus: NifS-like protein; YPA_1498; phage(gi9628230)  4e-08  Click
Region 5, total : 9 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2167942..2171607  PHAGE_Equid__1: envelope glycoprotein J; YPA_1935; phage(gi50313312)  3e-12  Click
2 2171702..2171935  PHAGE_Haemop_SuMu: IS1414 transposase; YPA_1936; phage(gi418489079)  2e-12  Click
3 2172007..2172909  PROPHAGE_Escher_CFT073: transposase; YPA_1937; phage(gi26246249)  1e-163  Click
4 complement(2172976..2173092)  PROPHAGE_Ralsto_GMI1000: isrso11-transposase orfb protein; putative;; phage YPA_1938(gi17546155)  3e-06  Click
5 complement(2173186..2173473)  hypothetical protein; YPA_1939  N/A  Click
6 2173708..2174754  dihydroorotase; YPA_1940  N/A  Click
7 2175067..2175312  PHAGE_Gifsy_2: bacteriophage damage-inducible protein DinI; YPA_1941; phage(gi169257284)  5e-13  Click
8 2175818..2176114  biofilm formation regulatory protein BssS; YPA_1942  N/A  Click
9 complement(2176077..2176604)  PROPHAGE_Escher_CFT073: transposase; YPA_1943; phage(gi26246249)  2e-93  Click
Region 6, total : 14 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 4094562..4095167  PHAGE_Acinet_Ac42: hypothetical protein; YPA_3651; phage(gi311992578)  7e-19  Click
2 complement(4095357..4096211)  putative glutathione S-transferase YghU; YPA_3652  N/A  Click
3 4096462..4097808  hypothetical protein; YPA_3653  N/A  Click
4 complement(4097915..4099090)  PHAGE_Clostr_phiCD38_2: tail tape measure; YPA_3654; phage(gi333798123)  7e-05  Click
5 4099495..4099953  PHAGE_Hypert_2: IS element Dka2 orfA; YPA_3655; phage(gi300116744)  4e-15  Click
6 complement(4100136..4100348)  PHAGE_Lactoc_bIL312: Csp; YPA_3656; phage(gi13095918)  4e-17  Click
7 complement(4100608..4100916)  PHAGE_Lactoc_bIL312: Csp; YPA_3657; phage(gi13095918)  3e-17  Click
8 4101065..4101262  hypothetical protein; YPA_3658  N/A  Click
9 complement(4101353..4101820)  PHAGE_Escher_TL_2011b: putative outer membrane lipoprotein; YPA_3659; phage(gi418487638)  2e-08  Click
10 4102296..4103108  hypothetical protein; YPA_3660  N/A  Click
11 4103173..4104063  PHAGE_Synech_S_SM1: 6-phosphogluconate dehydrogenase; YPA_3661; phage(gi326782617)  5e-11  Click
12 4104241..4104636  putative gamma carboxymuconolactone decarboxylase; YPA_3662  N/A  Click
13 4104790..4106154  PHAGE_Burkho_phi1026b: gp59; YPA_3663; phage(gi38707949)  1e-21  Click
14 4106244..4106906  PHAGE_Strept_phiC31: gp26; YPA_3664; phage(gi40807292)  3e-05  Click