Definition | Yersinia pestis Antiqua chromosome, complete genome. |
---|---|
Accession | NC_008150 |
Length | 4,702,289 |
Legend
Hits against Virus and prophage DB | |
Hits against Bacterial DB or GenBank file |
Region 1, total : 8 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | complement(2525..3991) | PHAGE_Bacill_36: putative metalloprotein chaperonin subunit; YPA_0004; phage(gi156564046) | 1e-06 | Click |
2 | complement(3995..5482) | PHAGE_Acidia_virus: hypothetical protein ATV_gp66; YPA_0005; phage(gi75750456) | 6e-13 | Click |
3 | 5552..6574 | PROPHAGE_Escher_CFT073: transposase; YPA_0006; phage(gi26248360) | 0.0 | Click |
4 | 6574..7353 | PHAGE_Pseudo_F10: DNA replication protein DnaC; YPA_0007; phage(gi148912818) | 2e-11 | Click |
5 | complement(7397..7507) | hypothetical protein; YPA_0008 | N/A | Click |
6 | 7781..9649 | PHAGE_Parame_FR483: hypothetical protein FR483_N110R; YPA_0009; phage(gi155370208) | 3e-76 | Click |
7 | 9854..10273 | D-ribose pyranase; YPA_0010 | N/A | Click |
8 | 10324..11250 | PHAGE_Synech_S_SSM7: putative carbohydrate kinase; YPA_0011; phage(gi326783786) | 5e-06 | Click |
Region 2, total : 16 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1101533..1101823 | PHAGE_Salmon_SPN3UB: hypothetical protein; YPA_0953; phage(gi423262443) | 7e-16 | Click |
2 | 1101839..1102486 | putative ATP-binding protein; YPA_0954 | N/A | Click |
3 | 1102491..1102685 | PHAGE_Entero_SfV: hypothetical protein SfVp10; YPA_0955; phage(gi19549000) | 1e-06 | Click |
4 | 1102682..1104190 | PHAGE_Entero_SfV: tail sheath protein; YPA_0956; phage(gi19549001) | 4e-107 | Click |
5 | 1104212..1104580 | PHAGE_Entero_SfV: hypothetical protein SfVp12; YPA_0957; phage(gi19549002) | 2e-10 | Click |
6 | 1104582..1104881 | hypothetical protein; YPA_0958 | N/A | Click |
7 | 1105002..1106495 | putative bacteriophage coat protein; YPA_0959 | N/A | Click |
8 | 1106762..1108168 | PHAGE_Entero_SfV: tail/DNA circulation protein; YPA_0960; phage(gi19549005) | 3e-20 | Click |
9 | 1108165..1109220 | PHAGE_Entero_SfV: tail protein; YPA_0961; phage(gi19549006) | 3e-32 | Click |
10 | 1109236..1109832 | PHAGE_Entero_SfV: tail protein; YPA_0962; phage(gi19549007) | 2e-17 | Click |
11 | 1109829..1110284 | PHAGE_Entero_SfV: tail protein; YPA_0963; phage(gi19549008) | 5e-14 | Click |
12 | 1110288..1111424 | PHAGE_Entero_SfV: tail protein; YPA_0964; phage(gi19549009) | 8e-33 | Click |
13 | 1111421..1111681 | PHAGE_Salmon_ST64B: putative tail protein; YPA_0965; phage(gi23505467) | 5e-05 | Click |
14 | 1111621..1112025 | PHAGE_Entero_SfV: tail protein; YPA_0966; phage(gi19548988) | 4e-11 | Click |
15 | 1112122..1112901 | PHAGE_Entero_HK97: tail fiber; YPA_0967; phage(gi9634179) | 8e-54 | Click |
16 | 1113199..1113939 | PHAGE_Acanth_moumouvirus: putative glucosamine-fructose-6-phosphate aminotransferase; YPA_0968; phage(gi441432573) | 3e-05 | Click |
Region 3, total : 19 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1394437..1394449 | attL TGTTTTTTTTAGG | N/A | Click |
2 | complement(1398705..1399262) | PHAGE_Pectob_ZF40: putative integrase; YPA_1246; phage(gi422936642) | 2e-69 | Click |
3 | 1399331..1399558 | PHAGE_Salmon_SPN9CC: replicative DNA helicase; YPA_1247; phage(gi389060513) | 2e-14 | Click |
4 | complement(1400895..1401056) | hypothetical protein; YPA_1248 | N/A | Click |
5 | complement(1401082..1401426) | hypothetical protein; YPA_1249 | N/A | Click |
6 | complement(1401646..1402605) | PHAGE_Lactob_phiAT3: putative transposase B; YPA_1250; phage(gi48697274) | 6e-15 | Click |
7 | complement(1402677..1403096) | hypothetical protein; YPA_1251 | N/A | Click |
8 | complement(1403207..1403347) | PHAGE_Entero_PsP3: gp21; YPA_1252; phage(gi41057373) | 1e-13 | Click |
9 | complement(1403771..1404076) | hypothetical protein; YPA_1253 | N/A | Click |
10 | complement(1404723..1405010) | PHAGE_Aeromo_vB_AsaM_56: putative tail-fiber protein; YPA_1254; phage(gi422937565) | 7e-06 | Click |
11 | complement(1405027..1405326) | PHAGE_Entero_PsP3: gp16; YPA_1255; phage(gi41057368) | 8e-25 | Click |
12 | complement(1405323..1405682) | PHAGE_Entero_PsP3: gp15; YPA_1256; phage(gi41057367) | 9e-19 | Click |
13 | 1405713..1405985 | PHAGE_Burkho_phiE202: gp6, pANL56; YPA_1257; phage(gi134288760) | 2e-12 | Click |
14 | 1405966..1406256 | PHAGE_Burkho_phiE202: gp7, pANL12; YPA_1258; phage(gi134288781) | 3e-07 | Click |
15 | 1406322..1407398 | hypothetical protein; YPA_1259 | N/A | Click |
16 | 1407446..1408306 | PROPHAGE_Escher_CFT073: transposase; YPA_1260; phage(gi26246249) | 3e-139 | Click |
17 | 1408306..1408644 | PROPHAGE_Escher_CFT073: transposase; YPA_1261; phage(gi26246249) | 2e-56 | Click |
18 | complement(1409062..1409631) | hypothetical protein; YPA_1262 | N/A | Click |
19 | complement(1409643..1410077) | hypothetical protein; YPA_1263 | N/A | Click |
20 | 1410495..1410701 | PHAGE_Entero_Sf6: putative transposase OrfB; YPA_1264; phage(gi41057343) | 1e-22 | Click |
21 | 1423626..1423638 | attR TGTTTTTTTTAGG | N/A | Click |
Region 4, total : 33 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1647984..1648014 | attL ATATTGAATAAGCCGAGTTGGGCTAAATAAC | N/A | Click |
2 | complement(1648040..1649278) | PHAGE_Salmon_1: putative bacteriophage integrase; YPA_1466; phage(gi169257156) | 1e-125 | Click |
3 | 1649348..1650370 | PROPHAGE_Escher_CFT073: transposase; YPA_1467; phage(gi26248360) | 0.0 | Click |
4 | 1650370..1651149 | PROPHAGE_Escher_CFT073: transposase/IS protein; YPA_1468; phage(gi26248359) | 1e-142 | Click |
5 | 1651165..1651263 | hypothetical protein; YPA_1469 | N/A | Click |
6 | 1651264..1652376 | PHAGE_Cronob_phiES15: hypothetical protein; YPA_1470; phage(gi401817594) | 3e-123 | Click |
7 | 1652498..1653271 | PHAGE_Xantho_Xp15: putative phage structural protein; YPA_1471; phage(gi66392059) | 1e-19 | Click |
8 | 1653285..1654490 | PHAGE_Acinet_Bphi_B1251: major capsid protein; YPA_1472; phage(gi423262007) | 1e-113 | Click |
9 | 1654490..1655020 | PHAGE_Cronob_phiES15: hypothetical protein; YPA_1473; phage(gi401817598) | 3e-23 | Click |
10 | 1655083..1655271 | PHAGE_Salmon_SSU5: hypothetical protein; YPA_1474; phage(gi410491538) | 1e-16 | Click |
11 | 1655273..1655623 | PHAGE_Cronob_phiES15: putative structural protein 2; YPA_1475; phage(gi401817599) | 5e-33 | Click |
12 | 1655625..1656209 | PHAGE_Shigel_EP23: putative tail protein; YPA_1476; phage(gi371496282) | 2e-27 | Click |
13 | 1656206..1656613 | PHAGE_Cronob_phiES15: hypothetical protein; YPA_1477; phage(gi401817601) | 1e-16 | Click |
14 | 1656679..1657599 | PHAGE_Cronob_phiES15: putative major tail protein; YPA_1478; phage(gi401817602) | 3e-75 | Click |
15 | 1657612..1657923 | PHAGE_Cronob_phiES15: hypothetical protein; YPA_1479; phage(gi401817603) | 9e-32 | Click |
16 | 1658232..1661735 | PHAGE_Entero_mEp213: tail length tape measure protein; YPA_1480; phage(gi428782602) | 5e-152 | Click |
17 | 1661738..1662079 | PHAGE_Cronob_phiES15: putative minor tail protein; YPA_1481; phage(gi401817607) | 2e-31 | Click |
18 | 1662385..1662843 | PROPHAGE_Salmon_Ty2: transposase; YPA_1482; phage(gi29143766) | 5e-84 | Click |
19 | 1662964..1663716 | PHAGE_Entero_HK225: minor tail protein; YPA_1483; phage(gi428782393) | 3e-101 | Click |
20 | 1663719..1664429 | PHAGE_Entero_HK140: minor tail protein K; YPA_1484; phage(gi428781957) | 8e-109 | Click |
21 | 1664690..1665322 | hypothetical protein; YPA_1485 | N/A | Click |
22 | complement(1665401..1665940) | PHAGE_Escher_TL_2011b: hypothetical protein; YPA_1486; phage(gi418487671) | 3e-32 | Click |
23 | 1666197..1667204 | PHAGE_Haemop_Aaphi23: putative antirepressor protein Ant; YPA_1487; phage(gi31544021) | 4e-37 | Click |
24 | 1667303..1667854 | PHAGE_Cronob_phiES15: hypothetical protein; YPA_1488; phage(gi401817606) | 5e-08 | Click |
25 | 1668268..1668888 | PHAGE_Entero_mEpX2: tail assembly protein; YPA_1489; phage(gi428765633) | 9e-66 | Click |
26 | 1669460..1672663 | PHAGE_Cronob_phiES15: putative host specificity protein; YPA_1490; phage(gi401817611) | 0.0 | Click |
27 | 1672648..1673661 | PHAGE_Cronob_phiES15: hypothetical protein; YPA_1491; phage(gi401817612) | 7e-25 | Click |
28 | 1673678..1674595 | PHAGE_Salmon_SSU5: putative phage tail fiber protein; YPA_1492; phage(gi410491431) | 2e-09 | Click |
29 | 1674606..1675025 | PHAGE_Bacter_2: tail fiber; YPA_1493; phage(gi212499733) | 2e-10 | Click |
30 | 1675022..1675177 | hypothetical protein; YPA_1494 | N/A | Click |
31 | complement(1675246..1676454) | PROPHAGE_Escher_CFT073: transposase; YPA_1495; phage(gi26246249) | 0.0 | Click |
32 | 1676645..1676675 | attR ATATTGAATAAGCCGAGTTGGGCTAAATAAC | N/A | Click |
33 | complement(1676759..1676995) | hypothetical protein; YPA_1496 | N/A | Click |
34 | complement(1676970..1677932) | hypothetical protein; YPA_1497 | N/A | Click |
35 | complement(1677936..1679135) | PHAGE_Africa_virus: NifS-like protein; YPA_1498; phage(gi9628230) | 4e-08 | Click |
Region 5, total : 9 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 2167942..2171607 | PHAGE_Equid__1: envelope glycoprotein J; YPA_1935; phage(gi50313312) | 3e-12 | Click |
2 | 2171702..2171935 | PHAGE_Haemop_SuMu: IS1414 transposase; YPA_1936; phage(gi418489079) | 2e-12 | Click |
3 | 2172007..2172909 | PROPHAGE_Escher_CFT073: transposase; YPA_1937; phage(gi26246249) | 1e-163 | Click |
4 | complement(2172976..2173092) | PROPHAGE_Ralsto_GMI1000: isrso11-transposase orfb protein; putative;; phage YPA_1938(gi17546155) | 3e-06 | Click |
5 | complement(2173186..2173473) | hypothetical protein; YPA_1939 | N/A | Click |
6 | 2173708..2174754 | dihydroorotase; YPA_1940 | N/A | Click |
7 | 2175067..2175312 | PHAGE_Gifsy_2: bacteriophage damage-inducible protein DinI; YPA_1941; phage(gi169257284) | 5e-13 | Click |
8 | 2175818..2176114 | biofilm formation regulatory protein BssS; YPA_1942 | N/A | Click |
9 | complement(2176077..2176604) | PROPHAGE_Escher_CFT073: transposase; YPA_1943; phage(gi26246249) | 2e-93 | Click |
Region 6, total : 14 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 4094562..4095167 | PHAGE_Acinet_Ac42: hypothetical protein; YPA_3651; phage(gi311992578) | 7e-19 | Click |
2 | complement(4095357..4096211) | putative glutathione S-transferase YghU; YPA_3652 | N/A | Click |
3 | 4096462..4097808 | hypothetical protein; YPA_3653 | N/A | Click |
4 | complement(4097915..4099090) | PHAGE_Clostr_phiCD38_2: tail tape measure; YPA_3654; phage(gi333798123) | 7e-05 | Click |
5 | 4099495..4099953 | PHAGE_Hypert_2: IS element Dka2 orfA; YPA_3655; phage(gi300116744) | 4e-15 | Click |
6 | complement(4100136..4100348) | PHAGE_Lactoc_bIL312: Csp; YPA_3656; phage(gi13095918) | 4e-17 | Click |
7 | complement(4100608..4100916) | PHAGE_Lactoc_bIL312: Csp; YPA_3657; phage(gi13095918) | 3e-17 | Click |
8 | 4101065..4101262 | hypothetical protein; YPA_3658 | N/A | Click |
9 | complement(4101353..4101820) | PHAGE_Escher_TL_2011b: putative outer membrane lipoprotein; YPA_3659; phage(gi418487638) | 2e-08 | Click |
10 | 4102296..4103108 | hypothetical protein; YPA_3660 | N/A | Click |
11 | 4103173..4104063 | PHAGE_Synech_S_SM1: 6-phosphogluconate dehydrogenase; YPA_3661; phage(gi326782617) | 5e-11 | Click |
12 | 4104241..4104636 | putative gamma carboxymuconolactone decarboxylase; YPA_3662 | N/A | Click |
13 | 4104790..4106154 | PHAGE_Burkho_phi1026b: gp59; YPA_3663; phage(gi38707949) | 1e-21 | Click |
14 | 4106244..4106906 | PHAGE_Strept_phiC31: gp26; YPA_3664; phage(gi40807292) | 3e-05 | Click |