Definition Yersinia pestis Nepal516, complete genome.
Accession NC_008149
Length 4,534,590
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 48 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1771572..1771602  attL    ATATTGAATAAGCCGAGTTGGGCTAAATAAC  N/A  Click
2 complement(1771628..1772866)  PHAGE_Salmon_1: putative bacteriophage integrase; YPN_1560; phage(gi169257156)  1e-125  Click
3 1772936..1773958  PROPHAGE_Escher_CFT073: transposase; YPN_1561; phage(gi26248360)  0.0  Click
4 1773958..1774737  PROPHAGE_Escher_CFT073: transposase/IS protein; YPN_1562; phage(gi26248359)  1e-142  Click
5 complement(1775465..1776109)  PHAGE_Pseudo_F116: DNA adenine methyltransferase; YPN_1563; phage(gi56692911)  4e-43  Click
6 1776190..1776636  PHAGE_Cronob_ENT47670: putative ninB protein; YPN_1564; phage(gi431810524)  5e-47  Click
7 1776710..1777315  PHAGE_Salmon_ST160: NinG; YPN_1565; phage(gi318065938)  4e-43  Click
8 1777316..1777705  PHAGE_Entero_2008: antitermination protein Q; YPN_1566; phage(gi209427762)  2e-44  Click
9 1777976..1778539  PHAGE_Salmon_SPN3UB: hypothetical protein; YPN_1567; phage(gi423262398)  1e-29  Click
10 complement(1778624..1778806)  hypothetical protein; YPN_1568  N/A  Click
11 1778963..1779172  hypothetical protein; YPN_1569  N/A  Click
12 1779918..1780430  PHAGE_Cronob_phiES15: putative endolysin; YPN_1570; phage(gi401817587)  2e-51  Click
13 1780415..1780873  PHAGE_Entero_cdtI: lysin; YPN_1571; phage(gi148609441)  2e-24  Click
14 1781419..1782132  PHAGE_Cronob_ENT47670: phage antirepressor protein; YPN_1572; phage(gi431810509)  6e-50  Click
15 1782589..1783224  PHAGE_Pectob_ZF40: putative transposase; YPN_1573; phage(gi422936679)  3e-87  Click
16 1783255..1783704  PHAGE_Salmon_vB_SosS_Oslo: hypothetical protein; YPN_1574; phage(gi399528759)  4e-51  Click
17 1783714..1784292  PHAGE_Cronob_phiES15: terminase large subunit; YPN_1575; phage(gi401817592)  5e-65  Click
18 1784340..1785548  PROPHAGE_Escher_CFT073: transposase; YPN_1576; phage(gi26246249)  0.0  Click
19 1785553..1786527  PHAGE_Cronob_phiES15: terminase large subunit; YPN_1577; phage(gi401817592)  5e-144  Click
20 1786527..1787255  PHAGE_Burkho_KL1: portal protein; YPN_1578; phage(gi399528722)  2e-35  Click
21 1787274..1787915  PHAGE_Burkho_KL1: portal protein; YPN_1579; phage(gi399528722)  1e-34  Click
22 1787916..1789028  PHAGE_Cronob_phiES15: hypothetical protein; YPN_1580; phage(gi401817594)  3e-123  Click
23 1789150..1789923  PHAGE_Xantho_Xp15: putative phage structural protein; YPN_1581; phage(gi66392059)  1e-19  Click
24 1789937..1791142  PHAGE_Acinet_Bphi_B1251: major capsid protein; YPN_1582; phage(gi423262007)  1e-113  Click
25 1791142..1791672  PHAGE_Cronob_phiES15: hypothetical protein; YPN_1583; phage(gi401817598)  3e-23  Click
26 1791735..1791923  PHAGE_Salmon_SSU5: hypothetical protein; YPN_1584; phage(gi410491538)  1e-16  Click
27 1791925..1792275  PHAGE_Cronob_phiES15: putative structural protein 2; YPN_1585; phage(gi401817599)  5e-33  Click
28 1792277..1792861  PHAGE_Shigel_EP23: putative tail protein; YPN_1586; phage(gi371496282)  2e-27  Click
29 1792858..1793265  PHAGE_Cronob_phiES15: hypothetical protein; YPN_1587; phage(gi401817601)  1e-16  Click
30 1793331..1794251  PHAGE_Cronob_phiES15: putative major tail protein; YPN_1588; phage(gi401817602)  3e-75  Click
31 1794264..1794575  PHAGE_Cronob_phiES15: hypothetical protein; YPN_1589; phage(gi401817603)  9e-32  Click
32 1794884..1798387  PHAGE_Entero_mEp213: tail length tape measure protein; YPN_1590; phage(gi428782602)  5e-152  Click
33 1798390..1798731  PHAGE_Cronob_phiES15: putative minor tail protein; YPN_1591; phage(gi401817607)  2e-31  Click
34 1799037..1799495  PROPHAGE_Salmon_Ty2: transposase; YPN_1592; phage(gi29143766)  3e-85  Click
35 1799616..1800368  PHAGE_Entero_HK225: minor tail protein; YPN_1593; phage(gi428782393)  3e-101  Click
36 1800371..1801081  PHAGE_Entero_HK140: minor tail protein K; YPN_1594; phage(gi428781957)  8e-109  Click
37 1801342..1801974  hypothetical protein; YPN_1595  N/A  Click
38 complement(1802053..1802592)  PHAGE_Escher_TL_2011b: hypothetical protein; YPN_1596; phage(gi418487671)  3e-32  Click
39 1802849..1803856  PHAGE_Haemop_Aaphi23: putative antirepressor protein Ant; YPN_1597; phage(gi31544021)  4e-37  Click
40 1803955..1804506  PHAGE_Cronob_phiES15: hypothetical protein; YPN_1598; phage(gi401817606)  5e-08  Click
41 1804920..1805540  PHAGE_Entero_mEpX2: tail assembly protein; YPN_1599; phage(gi428765633)  9e-66  Click
42 1806112..1809315  PHAGE_Cronob_phiES15: putative host specificity protein; YPN_1600; phage(gi401817611)  0.0  Click
43 1809300..1810313  PHAGE_Cronob_phiES15: hypothetical protein; YPN_1601; phage(gi401817612)  7e-25  Click
44 1810330..1811247  PHAGE_Salmon_SSU5: putative phage tail fiber protein; YPN_1602; phage(gi410491431)  2e-09  Click
45 1811258..1811677  PHAGE_Bacter_2: tail fiber; YPN_1603; phage(gi212499733)  2e-10  Click
46 1811674..1811829  hypothetical protein; YPN_1604  N/A  Click
47 complement(1811898..1813106)  PROPHAGE_Escher_CFT073: transposase; YPN_1605; phage(gi26246249)  0.0  Click
48 1813297..1813327  attR    ATATTGAATAAGCCGAGTTGGGCTAAATAAC  N/A  Click
49 complement(1813411..1814583)  hypothetical protein; YPN_1606  N/A  Click
50 complement(1814587..1815786)  PHAGE_Africa_virus: NifS-like protein; YPN_1607; phage(gi9628230)  4e-08  Click
Region 2, total : 20 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2513662..2513674  attL    CAGCAATATAAAG  N/A  Click
2 complement(2524315..2524521)  PHAGE_Entero_Sf6: putative transposase OrfB; YPN_2237; phage(gi41057343)  1e-22  Click
3 2524939..2525373  hypothetical protein; YPN_2238  N/A  Click
4 2525385..2525954  hypothetical protein; YPN_2239  N/A  Click
5 complement(2526372..2526710)  PROPHAGE_Escher_CFT073: transposase; YPN_2240; phage(gi26246249)  2e-56  Click
6 complement(2526710..2527570)  PROPHAGE_Escher_CFT073: transposase; YPN_2241; phage(gi26246249)  3e-139  Click
7 complement(2527618..2528694)  hypothetical protein; YPN_2242  N/A  Click
8 complement(2528760..2529050)  PHAGE_Burkho_phiE202: gp7, pANL12; YPN_2243; phage(gi134288781)  3e-07  Click
9 complement(2529031..2529303)  PHAGE_Burkho_phiE202: gp6, pANL56; YPN_2244; phage(gi134288760)  2e-12  Click
10 2529334..2529693  PHAGE_Entero_PsP3: gp15; YPN_2245; phage(gi41057367)  9e-19  Click
11 2529690..2529989  PHAGE_Entero_PsP3: gp16; YPN_2246; phage(gi41057368)  8e-25  Click
12 2530006..2530293  PHAGE_Aeromo_vB_AsaM_56: putative tail-fiber protein; YPN_2247; phage(gi422937565)  7e-06  Click
13 2530940..2531245  hypothetical protein; YPN_2248  N/A  Click
14 2531669..2531809  PHAGE_Entero_PsP3: gp21; YPN_2249; phage(gi41057373)  1e-13  Click
15 2531920..2532339  hypothetical protein; YPN_2250  N/A  Click
16 2532411..2533370  PHAGE_Lactob_phiAT3: putative transposase B; YPN_2251; phage(gi48697274)  6e-15  Click
17 2533590..2533934  hypothetical protein; YPN_2252  N/A  Click
18 2533960..2534139  hypothetical protein; YPN_2253  N/A  Click
19 complement(2534543..2534716)  hypothetical protein; YPN_2254  N/A  Click
20 complement(2535476..2535703)  PHAGE_Salmon_SPN9CC: replicative DNA helicase; YPN_2255; phage(gi389060513)  2e-14  Click
21 2535772..2536329  PHAGE_Pectob_ZF40: putative integrase; YPN_2256; phage(gi422936642)  6e-70  Click
22 2537137..2537149  attR    CAGCAATATAAAG  N/A  Click
Region 3, total : 17 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(3072496..3073236)  PHAGE_Acanth_moumouvirus: putative glucosamine-fructose-6-phosphate aminotransferase; YPN_2723; phage(gi441432573)  3e-05  Click
2 complement(3073534..3074313)  PHAGE_Entero_HK97: tail fiber; YPN_2724; phage(gi9634179)  8e-54  Click
3 complement(3074410..3074814)  PHAGE_Entero_SfV: tail protein; YPN_2725; phage(gi19548988)  4e-11  Click
4 complement(3074754..3075014)  PHAGE_Salmon_ST64B: putative tail protein; YPN_2726; phage(gi23505467)  5e-05  Click
5 complement(3075011..3076147)  PHAGE_Entero_SfV: tail protein; YPN_2727; phage(gi19549009)  8e-33  Click
6 complement(3076151..3076606)  PHAGE_Entero_SfV: tail protein; YPN_2728; phage(gi19549008)  5e-14  Click
7 complement(3076603..3077199)  PHAGE_Entero_SfV: tail protein; YPN_2729; phage(gi19549007)  2e-17  Click
8 complement(3077215..3078270)  PHAGE_Entero_SfV: tail protein; YPN_2730; phage(gi19549006)  3e-32  Click
9 complement(3078267..3079673)  PHAGE_Entero_SfV: tail/DNA circulation protein; YPN_2731; phage(gi19549005)  3e-20  Click
10 complement(3079940..3081433)  bacteriophage coat protein; YPN_2732  N/A  Click
11 complement(3081554..3081853)  hypothetical protein; YPN_2733  N/A  Click
12 3081807..3082211  hypothetical protein; YPN_2734  N/A  Click
13 complement(3081855..3082223)  PHAGE_Entero_SfV: hypothetical protein SfVp12; YPN_2735; phage(gi19549002)  2e-10  Click
14 complement(3082245..3083753)  PHAGE_Entero_SfV: tail sheath protein; YPN_2736; phage(gi19549001)  4e-107  Click
15 complement(3083750..3083944)  PHAGE_Entero_SfV: hypothetical protein SfVp10; YPN_2737; phage(gi19549000)  1e-06  Click
16 complement(3083949..3084596)  ATP-binding protein; YPN_2738  N/A  Click
17 complement(3084612..3084902)  PHAGE_Salmon_SPN3UB: hypothetical protein; YPN_2739; phage(gi423262443)  7e-16  Click
Region 4, total : 13 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(4018258..4018920)  PHAGE_Strept_phiC31: gp26; YPN_3520; phage(gi40807292)  3e-05  Click
2 complement(4019010..4020374)  PHAGE_Burkho_phi1026b: gp59; YPN_3521; phage(gi38707949)  1e-21  Click
3 complement(4020528..4020923)  gamma carboxymuconolactone decarboxylase; YPN_3522  N/A  Click
4 complement(4021101..4021991)  PHAGE_Synech_S_SM1: 6-phosphogluconate dehydrogenase; YPN_3523; phage(gi326782617)  5e-11  Click
5 complement(4022056..4022868)  hypothetical protein; YPN_3524  N/A  Click
6 4023344..4023811  PHAGE_Escher_TL_2011b: putative outer membrane lipoprotein; YPN_3525; phage(gi418487638)  2e-08  Click
7 4024248..4024556  PHAGE_Lactoc_bIL312: Csp; YPN_3526; phage(gi13095918)  3e-17  Click
8 4024816..4025028  PHAGE_Lactoc_bIL312: Csp; YPN_3527; phage(gi13095918)  4e-17  Click
9 complement(4025211..4025669)  PHAGE_Hypert_2: IS element Dka2 orfA; YPN_3528; phage(gi300116744)  4e-15  Click
10 4026074..4027249  PHAGE_Clostr_phiCD38_2: tail tape measure; YPN_3529; phage(gi333798123)  7e-05  Click
11 complement(4027356..4028702)  hypothetical protein; YPN_3530  N/A  Click
12 4028953..4029807  putative glutathione S-transferase YghU; YPN_3531  N/A  Click
13 complement(4029997..4030602)  PHAGE_Acinet_Ac42: hypothetical protein; YPN_3532; phage(gi311992578)  7e-19  Click