Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 21 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 403805..403817  attL    GCGCCCCATGGCG  N/A  Click
2 406261..407373  PROPHAGE_Shewan_MR-1: IS110 family transposase; Sala_0396; phage(gi24375433)  2e-18  Click
3 407422..407781  PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; Sala_0397; phage(gi17546153)  3e-08  Click
4 407787..408224  PHAGE_Stx2_c_1717: transposase; Sala_0398; phage(gi209447152)  5e-28  Click
5 408303..409688  PHAGE_Stx2_c_1717: transposase; Sala_0399; phage(gi209447153)  1e-82  Click
6 409685..409858  PHAGE_Stx2_c_1717: transposase; Sala_0400; phage(gi209447153)  1e-05  Click
7 complement(410461..410997)  GrpE protein; Sala_0401  N/A  Click
8 complement(411015..412946)  PHAGE_Bathyc_BpV1: hypothetical protein; Sala_0402; phage(gi313768007)  2e-162  Click
9 complement(413007..413822)  histidine kinase; Sala_0403  N/A  Click
10 complement(413875..414807)  PHAGE_Cafete_BV_PW1: putative DnaJ/Hsp40; Sala_0404; phage(gi310831116)  3e-18  Click
11 complement(414851..415291)  PHAGE_Lausan: thioredoxin; Sala_0405; phage(gi327409778)  1e-11  Click
12 complement(415330..417918)  PROPHAGE_Escher_EDL933: ATP-dependent Clp protease ATP-binding subunit; Sala_0406; phage(gi15800640)  2e-75  Click
13 complement(418042..418392)  PROPHAGE_Brucel_1330: IS5 family transposase orfB; Sala_0407; phage(gi23501423)  4e-38  Click
14 418721..419134  hypothetical protein; Sala_0408  N/A  Click
15 419189..420106  hypothetical protein; Sala_0409  N/A  Click
16 420204..420824  hypothetical protein; Sala_0410  N/A  Click
17 420935..421555  hypothetical protein; Sala_0411  N/A  Click
18 421590..422132  hypothetical protein; Sala_0412  N/A  Click
19 423120..423605  hypothetical protein; Sala_0414  N/A  Click
20 complement(423702..423857)  chaperonin GroEL; Sala_0415  N/A  Click
21 424080..424355  transposase IS3/IS911; Sala_0416  N/A  Click
22 424434..425963  PROPHAGE_Escher_CFT073: transposase; Sala_0417; phage(gi26248360)  6e-15  Click
23 429404..429416  attR    GCGCCCCATGGCG  N/A  Click
Region 2, total : 12 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 440662..440673  attL    CTTGATCGGATT  N/A  Click
2 complement(441560..443074)  PROPHAGE_Escher_CFT073: transposase; Sala_0433; phage(gi26248360)  2e-16  Click
3 443253..443660  hypothetical protein; Sala_0434  N/A  Click
4 complement(443726..444460)  hypothetical protein; Sala_0435  N/A  Click
5 complement(444457..444870)  hypothetical protein; Sala_0436  N/A  Click
6 complement(444934..446769)  PHAGE_Shrimp_virus: wsv026; Sala_0437; phage(gi17158130)  6e-10  Click
7 446826..448373  PHAGE_Thermu_26: phage XerD-like integrase; Sala_0438; phage(gi157265417)  2e-09  Click
8 448367..449281  PHAGE_Thermu_26: phage XerD-like integrase; Sala_0439; phage(gi157265417)  4e-05  Click
9 449278..450282  PHAGE_Thermu_26: phage XerD-like integrase; Sala_0440; phage(gi157265417)  2e-08  Click
10 complement(450421..452895)  PHAGE_Emilia_86: hypothetical protein EhV058; Sala_0441; phage(gi73852528)  5e-12  Click
11 complement(452936..453865)  PHAGE_Escher_TL_2011c: putative phage DNA primase; Sala_0442; phage(gi418487064)  1e-08  Click
12 453990..454646  PHAGE_Entero_PRD1: transglycosylase; Sala_0443; phage(gi9626369)  2e-17  Click
13 454668..454679  attR    CTTGATCGGATT  N/A  Click
14 complement(454701..455954)  PROPHAGE_Escher_CFT073: putative prophage integrase; Sala_0444; phage(gi26250313)  8e-79  Click
Region 3, total : 20 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2093653..2095446  PHAGE_Bacill_SPBc2: ABC transporter; Sala_1985; phage(gi9630145)  3e-25  Click
2 2095486..2096022  hypothetical protein; Sala_1986  N/A  Click
3 complement(2096030..2096455)  biopolymer transport protein ExbD/TolR; Sala_1987  N/A  Click
4 complement(2096682..2097803)  PHAGE_Human__4: EBNA-2; Sala_1988; phage(gi82503202)  5e-13  Click
5 complement(2097934..2098386)  PHAGE_Tetras_SI1: hypothetical protein; Sala_1989; phage(gi472342232)  4e-20  Click
6 complement(2098396..2100624)  PHAGE_Tetras_SI1: hypothetical protein; Sala_1990; phage(gi472342233)  5e-60  Click
7 complement(2100978..2101811)  PHAGE_Tetras_SI1: hypothetical protein; Sala_1991; phage(gi472342235)  3e-25  Click
8 complement(2101805..2104129)  PHAGE_Escher_phAPEC8: hypothetical protein; Sala_1992; phage(gi448260438)  8e-55  Click
9 complement(2104129..2104704)  PHAGE_Cyanop_MED4_184: tail tape measure protein; Sala_1993; phage(gi472340568)  5e-07  Click
10 complement(2104902..2105228)  hypothetical protein; Sala_1994  N/A  Click
11 complement(2105225..2105632)  PHAGE_Rhodob_RcapNL: gene transfer aget (GTA) orfg9-like phage major tail protein; Sala_1995; phage(gi461474972)  1e-14  Click
12 2105680..2106015  hypothetical protein; Sala_1996  N/A  Click
13 2106104..2107048  PHAGE_Nile_virus: hypothetical protein; Sala_1997; phage(gi115531836)  3e-10  Click
14 complement(2107424..2108917)  PHAGE_Entero_T5: L-shaped tail fiber protein; Sala_1998; phage(gi46401894)  9e-19  Click
15 complement(2109026..2110168)  PHAGE_Salmon_ST64B: Major capsid protein precursor; Sala_1999; phage(gi23505451)  2e-89  Click
16 complement(2110339..2110788)  PHAGE_Salmon_ST64B: Pro-head protease; Sala_2000; phage(gi23505450)  5e-15  Click
17 complement(2110785..2111117)  hypothetical protein; Sala_2001  N/A  Click
18 complement(2111214..2112320)  PHAGE_Burkho_phi1026b: gp3; Sala_2002; phage(gi38707893)  3e-19  Click
19 complement(2112334..2112975)  hypothetical protein; Sala_2003  N/A  Click
20 complement(2113125..2114435)  PHAGE_Strept_6: terminase large subunit; Sala_2004; phage(gi93007440)  5e-52  Click