| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Legend
| Hits against Virus and prophage DB | |
| Hits against Bacterial DB or GenBank file |
Region 1, total : 25 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 843244..843765 | PHAGE_Sinorh_PBC5: hypothetical protein PBC5p63; TM1040_0792; phage(gi18071249) | 1e-22 | Click |
| 2 | 843762..844118 | PHAGE_Sulfit_pCB2047_A: hypothetical protein; TM1040_0793; phage(gi472341907) | 2e-13 | Click |
| 3 | 844130..844861 | PHAGE_Entero_phiP27: hypothetical protein P27p17; TM1040_0794; phage(gi18249881) | 2e-09 | Click |
| 4 | 844851..845414 | hypothetical protein; TM1040_0795 | N/A | Click |
| 5 | 845629..846108 | PHAGE_Pseudo_H105/1: single-stranded binding protein; TM1040_0796; phage(gi327198512) | 4e-36 | Click |
| 6 | 846108..846362 | hypothetical protein; TM1040_0797 | N/A | Click |
| 7 | 846385..846966 | PHAGE_Sulfit_pCB2047_C: hypothetical protein; TM1040_0798; phage(gi472341807) | 1e-11 | Click |
| 8 | complement(847447..847725) | hypothetical protein; TM1040_0799 | N/A | Click |
| 9 | 847787..848365 | PHAGE_Pseudo_phi297: terminase small subunit; TM1040_0800; phage(gi374531284) | 2e-22 | Click |
| 10 | 848343..849593 | PHAGE_Pseudo_H105/1: phage terminase large subunit; TM1040_0801; phage(gi327198525) | 4e-134 | Click |
| 11 | 849590..850969 | PHAGE_Escher_HK639: hypothetical protein; TM1040_0802; phage(gi356870603) | 3e-60 | Click |
| 12 | 850956..852005 | PHAGE_Pseudo_MP1412: head morphogenesis/minor structural protein; TM1040_0803; phage(gi399529016) | 9e-60 | Click |
| 13 | 852235..852918 | PHAGE_Burkho_KL1: hypothetical protein; TM1040_0804; phage(gi399528724) | 6e-10 | Click |
| 14 | 852931..853899 | PHAGE_Pseudo_H105/1: conserved phage structural protein; TM1040_0805; phage(gi327198534) | 1e-62 | Click |
| 15 | 853963..854214 | hypothetical protein; TM1040_0806 | N/A | Click |
| 16 | 854216..854683 | PHAGE_Pseudo_vB_Pae_Kakheti25: virion protein; TM1040_0807; phage(gi388542673) | 2e-07 | Click |
| 17 | 854680..855129 | PHAGE_Pseudo_YuA: hypothetical protein; TM1040_0808; phage(gi162135121) | 5e-31 | Click |
| 18 | 855126..855500 | hypothetical protein; TM1040_0809 | N/A | Click |
| 19 | 855500..855901 | PHAGE_Salmon_SE2: hypothetical protein; TM1040_0810; phage(gi375267267) | 2e-21 | Click |
| 20 | 855898..856296 | hypothetical protein; TM1040_0811 | N/A | Click |
| 21 | 856572..857060 | hypothetical protein; TM1040_0812 | N/A | Click |
| 22 | 857163..857633 | hypothetical protein; TM1040_0813 | N/A | Click |
| 23 | 857759..858004 | hypothetical protein; TM1040_0814 | N/A | Click |
| 24 | complement(858001..858372) | PHAGE_Entero_4795: hypothetical protein PBV4795_ORF21; TM1040_0815; phage(gi157166006) | 1e-19 | Click |
| 25 | complement(858386..858688) | PHAGE_Entero_4795: hypothetical protein PBV4795_ORF22; TM1040_0816; phage(gi157166007) | 7e-10 | Click |
Region 2, total : 21 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1136156..1137433 | PHAGE_Strept_6: terminase large subunit; TM1040_1057; phage(gi93007440) | 9e-57 | Click |
| 2 | 1137683..1138888 | PHAGE_Strept_6: portal protein; TM1040_1058; phage(gi93007441) | 2e-20 | Click |
| 3 | 1138881..1139105 | hypothetical protein; TM1040_1059 | N/A | Click |
| 4 | 1139140..1139712 | PHAGE_Tetras_SI1: phage prohead protease; TM1040_1060; phage(gi472342256) | 2e-26 | Click |
| 5 | 1139733..1140929 | PHAGE_Azospi_Cd: Phage major capsid protein; TM1040_1061; phage(gi168495136) | 9e-70 | Click |
| 6 | 1141108..1141710 | PHAGE_Rhodob_RcapNL: hypothetical protein; TM1040_1062; phage(gi461474967) | 2e-06 | Click |
| 7 | 1141707..1142045 | hypothetical protein; TM1040_1063 | N/A | Click |
| 8 | 1142042..1142449 | hypothetical protein; TM1040_1064 | N/A | Click |
| 9 | 1142485..1142898 | PHAGE_Rhodob_RcapNL: gene transfer aget (GTA) orfg9-like phage major tail protein; TM1040_1065; phage(gi461474972) | 8e-21 | Click |
| 10 | 1142902..1143225 | hypothetical protein; TM1040_1066 | N/A | Click |
| 11 | 1143222..1143437 | hypothetical protein; TM1040_1067 | N/A | Click |
| 12 | 1143441..1144100 | PHAGE_Entero_2009a: putative bacteriophage tail tape measure protein; TM1040_1068; phage(gi225220098) | 2e-14 | Click |
| 13 | 1144114..1144746 | PHAGE_Roseob_1: putative glycoside hydrolase; TM1040_1069; phage(gi331028135) | 1e-46 | Click |
| 14 | 1144746..1145624 | PHAGE_Tetras_SI1: hypothetical protein; TM1040_1070; phage(gi472342235) | 1e-31 | Click |
| 15 | 1145621..1146058 | PHAGE_Roseob_1: phage cell wall peptidase; TM1040_1071; phage(gi331028137) | 1e-30 | Click |
| 16 | 1146071..1149991 | PHAGE_Tetras_SI1: hypothetical protein; TM1040_1072; phage(gi472342233) | 1e-33 | Click |
| 17 | 1149988..1150299 | hypothetical protein; TM1040_1073 | N/A | Click |
| 18 | complement(1150412..1150618) | PHAGE_Lactoc_bIL312: Csp; TM1040_1074; phage(gi13095918) | 1e-11 | Click |
| 19 | 1150977..1151783 | serine O-acetyltransferase; TM1040_1075 | N/A | Click |
| 20 | 1151953..1152252 | hypothetical protein; TM1040_1076 | N/A | Click |
| 21 | complement(1152399..1153739) | PHAGE_Rhodoc_RRH1: caudovirus prohead protease family protein; TM1040_1077; phage(gi372449807) | 6e-07 | Click |
Region 3, total : 28 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(1376648..1377646) | PHAGE_Vibrio_vB_VpaM_MAR: putative tail protein; TM1040_1278; phage(gi428782753) | 3e-51 | Click |
| 2 | complement(1377646..1377864) | PHAGE_Salmon_RE_2010: tail component protein; TM1040_1279; phage(gi418489702) | 1e-09 | Click |
| 3 | complement(1377836..1378246) | PHAGE_Vibrio_vB_VpaM_MAR: putative tail protein; TM1040_1280; phage(gi428782751) | 2e-25 | Click |
| 4 | complement(1378246..1380720) | PHAGE_Aggreg_S1249: putative tail length tape measure protein; TM1040_1281; phage(gi273809555) | 2e-16 | Click |
| 5 | complement(1380844..1381143) | hypothetical protein; TM1040_1282 | N/A | Click |
| 6 | complement(1381153..1381659) | PHAGE_Vibrio_vB_VpaM_MAR: tail tube protein; TM1040_1283; phage(gi428782747) | 3e-29 | Click |
| 7 | complement(1381659..1382876) | PHAGE_Vibrio_vB_VpaM_MAR: tail sheath protein; TM1040_1284; phage(gi428782746) | 3e-114 | Click |
| 8 | complement(1382990..1383349) | hypothetical protein; TM1040_1285 | N/A | Click |
| 9 | complement(1383350..1383850) | hypothetical protein; TM1040_1286 | N/A | Click |
| 10 | complement(1383852..1384859) | PHAGE_Prochl_P_SSM2: hypothetical protein; TM1040_1287; phage(gi61805998) | 4e-27 | Click |
| 11 | complement(1384859..1385146) | PHAGE_Prochl_P_SSM2: hypothetical protein; TM1040_1288; phage(gi61806173) | 1e-10 | Click |
| 12 | complement(1385181..1385909) | PROPHAGE_Salmon_Ty2: variable tail fiber protein; TM1040_1289; phage(gi29143754) | 6e-30 | Click |
| 13 | complement(1385920..1386465) | PROPHAGE_Salmon_Ty2: putative phage tail protein; TM1040_1290; phage(gi29143753) | 3e-28 | Click |
| 14 | complement(1386446..1387345) | PHAGE_Erwini_ENT90: baseplate assembly protein; TM1040_1291; phage(gi431810943) | 2e-72 | Click |
| 15 | complement(1387345..1387683) | PHAGE_Vibrio_vB_VpaM_MAR: baseplate assembly protein; TM1040_1292; phage(gi428782737) | 1e-25 | Click |
| 16 | complement(1387732..1388022) | PHAGE_Yersin_phiR1_37: hypothetical protein; TM1040_1293; phage(gi358356625) | 1e-23 | Click |
| 17 | complement(1388022..1388399) | PHAGE_Pseudo_phiCTX: predicted baseplate; TM1040_1294; phage(gi17313235) | 5e-12 | Click |
| 18 | complement(1388396..1388932) | PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; TM1040_1295; phage(gi428782734) | 3e-13 | Click |
| 19 | complement(1388932..1389480) | PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; TM1040_1296; phage(gi428782733) | 5e-10 | Click |
| 20 | complement(1389485..1389796) | hypothetical protein; TM1040_1297 | N/A | Click |
| 21 | complement(1389796..1390053) | hypothetical protein; TM1040_1298 | N/A | Click |
| 22 | complement(1390120..1392111) | PHAGE_Synech_S_CBS3: major capsid protein; TM1040_1299; phage(gi331028011) | 9e-95 | Click |
| 23 | complement(1392128..1393741) | PHAGE_Halomo_1: portal protein; TM1040_1300; phage(gi167832349) | 3e-62 | Click |
| 24 | complement(1393738..1394232) | PHAGE_Vibrio_VP882: putative phage-related protein; TM1040_1301; phage(gi126010851) | 1e-22 | Click |
| 25 | complement(1394279..1396231) | PHAGE_Stenot_S1: putative terminase large subunit; TM1040_1302; phage(gi213163902) | 2e-61 | Click |
| 26 | complement(1396228..1396782) | PHAGE_Halomo_1: putative terminase small subunit; TM1040_1303; phage(gi167832346) | 5e-08 | Click |
| 27 | complement(1396955..1397338) | PHAGE_Celeri_P12053L: hypothetical protein; TM1040_1304; phage(gi399528877) | 3e-10 | Click |
| 28 | complement(1397338..1397748) | PHAGE_Xylell_Xfas53: SAR endolysin; TM1040_1305; phage(gi273810445) | 8e-23 | Click |
Region 4, total : 27 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(1717238..1718308) | PHAGE_Synech_S_CBS4: tail fiber protein; TM1040_1609; phage(gi374531790) | 2e-38 | Click |
| 2 | complement(1718305..1719249) | PHAGE_Salico_CGphi29: hypothetical protein; TM1040_1610; phage(gi472340191) | 1e-19 | Click |
| 3 | complement(1719249..1723772) | PHAGE_Liston_phiHSIC: putative tail tape measure protein; TM1040_1611; phage(gi62362394) | 3e-14 | Click |
| 4 | complement(1724207..1724542) | PHAGE_Salico_CGphi29: hypothetical protein; TM1040_1612; phage(gi472340189) | 7e-05 | Click |
| 5 | complement(1724641..1725090) | hypothetical protein; TM1040_1613 | N/A | Click |
| 6 | complement(1725189..1725638) | PHAGE_Salico_CGphi29: hypothetical protein; TM1040_1614; phage(gi472340186) | 2e-20 | Click |
| 7 | complement(1725699..1725983) | hypothetical protein; TM1040_1615 | N/A | Click |
| 8 | complement(1726025..1726378) | hypothetical protein; TM1040_1616 | N/A | Click |
| 9 | complement(1726378..1726833) | PHAGE_Tetras_SI1: hypothetical protein; TM1040_1617; phage(gi472342243) | 1e-10 | Click |
| 10 | 1726834..1727211 | hypothetical protein; TM1040_1618 | N/A | Click |
| 11 | complement(1727252..1727833) | PHAGE_Rhodob_RcapNL: hypothetical protein; TM1040_1619; phage(gi461474967) | 2e-40 | Click |
| 12 | complement(1727837..1728298) | PHAGE_Rhodob_RcapNL: hypothetical protein; TM1040_1620; phage(gi461474966) | 2e-05 | Click |
| 13 | complement(1728295..1728756) | PHAGE_Rhodob_RcapNL: hypothetical protein; TM1040_1621; phage(gi461474965) | 4e-51 | Click |
| 14 | complement(1728820..1730139) | PHAGE_Rhodob_RcapNL: HK97 family major capsid protein; TM1040_1622; phage(gi461474964) | 0.0 | Click |
| 15 | complement(1730142..1731089) | PHAGE_Rhodob_RcapNL: peptidase S49; TM1040_1623; phage(gi461474963) | 3e-116 | Click |
| 16 | complement(1731086..1732372) | PHAGE_Rhodob_RcapNL: HK97 family portal protein; TM1040_1624; phage(gi461474962) | 3e-160 | Click |
| 17 | complement(1732375..1734075) | PHAGE_Rhodob_RcapNL: large terminase; TM1040_1625; phage(gi461474961) | 5e-135 | Click |
| 18 | complement(1734086..1734631) | PHAGE_Rhodob_RcapNL: hypothetical protein; TM1040_1626; phage(gi461474960) | 1e-29 | Click |
| 19 | 1734735..1735055 | hypothetical protein; TM1040_1627 | N/A | Click |
| 20 | 1735346..1735738 | hypothetical protein; TM1040_1628 | N/A | Click |
| 21 | complement(1736144..1738018) | PHAGE_Bdello_phi1422: putative primase; TM1040_1629; phage(gi422936836) | 6e-18 | Click |
| 22 | complement(1738048..1738329) | hypothetical protein; TM1040_1630 | N/A | Click |
| 23 | complement(1738333..1739175) | PHAGE_Rhodob_RcapNL: phage P4 alpha zn-binding domain-containing protein; TM1040_1631; phage(gi461475018) | 3e-40 | Click |
| 24 | complement(1739172..1739651) | hypothetical protein; TM1040_1632 | N/A | Click |
| 25 | complement(1739641..1740522) | PHAGE_Staphy_85: ORF016; TM1040_1633; phage(gi66394886) | 9e-07 | Click |
| 26 | complement(1740519..1740797) | hypothetical protein; TM1040_1634 | N/A | Click |
| 27 | complement(1740964..1741440) | PHAGE_Rhodob_RcapNL: hypothetical protein; TM1040_1635; phage(gi461475010) | 4e-06 | Click |
Region 5, total : 39 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1754696..1754711 | attL CCCGGCCCAGCGAGGA | N/A | Click |
| 2 | complement(1754832..1755464) | PHAGE_Cronob_vB_CsaM_GAP31: hypothetical protein; TM1040_1654; phage(gi414086852) | 4e-07 | Click |
| 3 | complement(1755461..1756456) | PHAGE_Microm_12T: hypothetical protein; TM1040_1655; phage(gi472342712) | 4e-06 | Click |
| 4 | complement(1756975..1757919) | PHAGE_Salico_CGphi29: hypothetical protein; TM1040_1656; phage(gi472340191) | 5e-19 | Click |
| 5 | complement(1757916..1762442) | PHAGE_Liston_phiHSIC: putative tail tape measure protein; TM1040_1657; phage(gi62362394) | 2e-13 | Click |
| 6 | 1762471..1762809 | hypothetical protein; TM1040_1658 | N/A | Click |
| 7 | complement(1762850..1763731) | hypothetical protein; TM1040_1659 | N/A | Click |
| 8 | complement(1763994..1764332) | PHAGE_Salico_CGphi29: hypothetical protein; TM1040_1660; phage(gi472340189) | 4e-06 | Click |
| 9 | complement(1764431..1764880) | hypothetical protein; TM1040_1661 | N/A | Click |
| 10 | complement(1764979..1765428) | PHAGE_Salico_CGphi29: hypothetical protein; TM1040_1662; phage(gi472340186) | 2e-20 | Click |
| 11 | complement(1765489..1765773) | hypothetical protein; TM1040_1663 | N/A | Click |
| 12 | complement(1765815..1766120) | hypothetical protein; TM1040_1664 | N/A | Click |
| 13 | complement(1766168..1766623) | PHAGE_Tetras_SI1: hypothetical protein; TM1040_1665; phage(gi472342243) | 2e-11 | Click |
| 14 | complement(1766620..1766958) | PHAGE_Rhizob_3: p010; TM1040_1666; phage(gi195546541) | 7e-10 | Click |
| 15 | complement(1766958..1767530) | PHAGE_Rhodob_RcapNL: hypothetical protein; TM1040_1667; phage(gi461474967) | 1e-21 | Click |
| 16 | complement(1767772..1768983) | PHAGE_Xantho_CP1: putative head protein; TM1040_1668; phage(gi431811003) | 5e-114 | Click |
| 17 | complement(1769008..1769694) | PHAGE_Tetras_SI1: phage prohead protease; TM1040_1669; phage(gi472342256) | 4e-29 | Click |
| 18 | complement(1769678..1770901) | PHAGE_Entero_mEp235: portal protein; TM1040_1670; phage(gi428781813) | 5e-76 | Click |
| 19 | complement(1770902..1772683) | PHAGE_Tetras_SI1: terminase; TM1040_1671; phage(gi472342258) | 8e-68 | Click |
| 20 | complement(1772661..1773068) | hypothetical protein; TM1040_1672 | N/A | Click |
| 21 | 1773573..1773896 | hypothetical protein; TM1040_1673 | N/A | Click |
| 22 | complement(1774102..1774671) | PHAGE_Sulfit_pCB2047_C: hypothetical protein; TM1040_1674; phage(gi472341807) | 1e-19 | Click |
| 23 | complement(1774694..1774942) | hypothetical protein; TM1040_1675 | N/A | Click |
| 24 | complement(1774948..1775424) | PHAGE_Entero_Sf6: gene 27 protein; TM1040_1676; phage(gi41057305) | 3e-36 | Click |
| 25 | complement(1775642..1776403) | hypothetical protein; TM1040_1677 | N/A | Click |
| 26 | complement(1776938..1777294) | PHAGE_Sulfit_pCB2047_A: hypothetical protein; TM1040_1678; phage(gi472341907) | 1e-13 | Click |
| 27 | complement(1777291..1777863) | PHAGE_Tetras_SI1: type II DNA modification methyltransferase; TM1040_1679; phage(gi472342268) | 7e-24 | Click |
| 28 | complement(1777863..1778165) | hypothetical protein; TM1040_1680 | N/A | Click |
| 29 | complement(1778403..1778846) | PHAGE_Rhodob_RcapNL: hypothetical protein; TM1040_1681; phage(gi461475010) | 8e-07 | Click |
| 30 | 1779272..1779922 | PHAGE_Pseudo_vB_PaeS_PMG1: cI repressor protein; TM1040_1682; phage(gi374531715) | 2e-06 | Click |
| 31 | 1779945..1780214 | hypothetical protein; TM1040_1683 | N/A | Click |
| 32 | 1780207..1780608 | PHAGE_Haemop_HP2: hypothetical protein HP2p14; TM1040_1684; phage(gi17981828) | 1e-06 | Click |
| 33 | 1780907..1781299 | hypothetical protein; TM1040_1685 | N/A | Click |
| 34 | 1781513..1781776 | hypothetical protein; TM1040_1686 | N/A | Click |
| 35 | 1781885..1782862 | PHAGE_Haemop_Aaphi23: hypothetical protein Aaphi23p07; TM1040_1687; phage(gi31544004) | 6e-64 | Click |
| 36 | 1782883..1783587 | PHAGE_Brucel_Tb: putative DNA-PolB associated Exonuclease; TM1040_1688; phage(gi418487737) | 4e-44 | Click |
| 37 | 1783760..1784104 | hypothetical protein; TM1040_1689 | N/A | Click |
| 38 | 1784101..1784478 | HNH nuclease; TM1040_1690 | N/A | Click |
| 39 | 1784602..1786695 | PHAGE_Rhodob_RcapNL: C-5 cytosine-specific DNA methylase; TM1040_1691; phage(gi461474996) | 0.0 | Click |
| 40 | 1787028..1787043 | attR CCCGGCCCAGCGAGGA | N/A | Click |
| 41 | 1787053..1788099 | PHAGE_Azospi_Cd: integrase; TM1040_1692; phage(gi168495175) | 3e-11 | Click |