| Definition | Nitrobacter hamburgensis X14, complete genome. |
|---|---|
| Accession | NC_007964 |
| Length | 4,406,967 |
Legend
| Hits against Virus and prophage DB | |
| Hits against Bacterial DB or GenBank file |
Region 1, total : 26 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 350726..352225 | PROPHAGE_Escher_CFT073: transposase; Nham_0318; phage(gi26248360) | 3e-15 | Click |
| 2 | 352225..353088 | PROPHAGE_Escher_CFT073: transposase/IS protein; Nham_0319; phage(gi26248359) | 7e-33 | Click |
| 3 | complement(353245..353643) | hypothetical protein; Nham_0320 | N/A | Click |
| 4 | complement(353645..353869) | hypothetical protein; Nham_0321 | N/A | Click |
| 5 | complement(353870..354598) | PHAGE_Salmon_ST160: recombination protein; Nham_0322; phage(gi318065915) | 4e-19 | Click |
| 6 | 355588..355890 | hypothetical protein; Nham_0323 | N/A | Click |
| 7 | complement(356016..356792) | hypothetical protein; Nham_0324 | N/A | Click |
| 8 | complement(356920..358089) | PHAGE_Azospi_Cd: integrase; Nham_0325; phage(gi168495175) | 1e-27 | Click |
| 9 | complement(358090..358329) | hypothetical protein; Nham_0326 | N/A | Click |
| 10 | complement(358338..358868) | hypothetical protein; Nham_0327 | N/A | Click |
| 11 | complement(358937..359347) | hypothetical protein; Nham_0328 | N/A | Click |
| 12 | 359516..360127 | hypothetical protein; Nham_0329 | N/A | Click |
| 13 | 360182..361186 | PHAGE_Staphy_phi2958PVL: hypothetical protein phi2958PVL_gp05; Nham_0330; phage(gi209363557) | 2e-26 | Click |
| 14 | 361194..362111 | hypothetical protein; Nham_0331 | N/A | Click |
| 15 | complement(362135..362470) | PHAGE_Marino_P12026: phage head-tail adaptor; Nham_0332; phage(gi399528325) | 8e-07 | Click |
| 16 | complement(362467..364095) | PHAGE_Burkho_KS9: terminase gp2; Nham_0333; phage(gi255033734) | 8e-56 | Click |
| 17 | complement(364098..364511) | PHAGE_Burkho_2: gp1, phage terminase, small subunit, P27 family; Nham_0334; phage(gi134288627) | 5e-13 | Click |
| 18 | complement(365205..365558) | PHAGE_Bacill_phi105: hypothetical protein phi105_50; Nham_0335; phage(gi22855043) | 1e-08 | Click |
| 19 | complement(365784..366170) | PHAGE_Azospi_Cd: hypothetical protein APCd_gp34; Nham_0336; phage(gi168495137) | 1e-11 | Click |
| 20 | complement(366230..367378) | PHAGE_Azospi_Cd: Phage major capsid protein; Nham_0337; phage(gi168495136) | 2e-54 | Click |
| 21 | complement(367386..367919) | PHAGE_Azospi_Cd: phage head maturation protease; Nham_0338; phage(gi168495135) | 1e-26 | Click |
| 22 | complement(367916..369139) | PHAGE_Azospi_Cd: portal protein; Nham_0339; phage(gi168495134) | 4e-41 | Click |
| 23 | complement(369340..369606) | hypothetical protein; Nham_0340 | N/A | Click |
| 24 | complement(369585..370481) | hypothetical protein; Nham_0341 | N/A | Click |
| 25 | complement(370827..371612) | hypothetical protein; Nham_0342 | N/A | Click |
| 26 | complement(371760..373799) | PHAGE_Rhizob_3: p101; Nham_0343; phage(gi195546631) | 3e-112 | Click |
Region 2, total : 20 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1594836..1596104 | PHAGE_Strept_6: terminase large subunit; Nham_1408; phage(gi93007440) | 7e-63 | Click |
| 2 | complement(1596277..1596564) | excinuclease ABC subunit C; Nham_1409 | N/A | Click |
| 3 | 1596648..1597823 | PHAGE_Xantho_OP1: putative head portal protein; Nham_1410; phage(gi84662598) | 5e-23 | Click |
| 4 | 1597892..1598104 | hypothetical protein; Nham_1411 | N/A | Click |
| 5 | 1598104..1598292 | hypothetical protein; Nham_1412 | N/A | Click |
| 6 | 1598382..1599029 | PHAGE_Tetras_SI1: phage prohead protease; Nham_1413; phage(gi472342256) | 2e-20 | Click |
| 7 | complement(1599072..1599452) | hypothetical protein; Nham_1414 | N/A | Click |
| 8 | 1599481..1600734 | PHAGE_Salmon_ST64B: Major capsid protein precursor; Nham_1415; phage(gi23505451) | 2e-81 | Click |
| 9 | complement(1600912..1601673) | PHAGE_Neodip_NPV: hypothetical protein; Nham_1416; phage(gi48843635) | 8e-06 | Click |
| 10 | 1601739..1602308 | PHAGE_Entero_mEp235: head-tail connector II; Nham_1417; phage(gi428781817) | 2e-05 | Click |
| 11 | 1602334..1602744 | PHAGE_Rhodob_RcapNL: gene transfer agent (GTA) orfg8-like protein; Nham_1418; phage(gi461474971) | 4e-17 | Click |
| 12 | 1602759..1603166 | PHAGE_Rhodob_RcapNL: gene transfer aget (GTA) orfg9-like phage major tail protein; Nham_1419; phage(gi461474972) | 5e-23 | Click |
| 13 | 1603313..1603633 | gene transfer agent (GTA) like protein; Nham_1420 | N/A | Click |
| 14 | 1603630..1603842 | hypothetical protein; Nham_1421 | N/A | Click |
| 15 | 1603835..1604419 | PHAGE_Entero_2009a: putative bacteriophage tail tape measure protein; Nham_1422; phage(gi225220098) | 5e-14 | Click |
| 16 | 1604559..1605200 | PHAGE_Roseob_1: putative glycoside hydrolase; Nham_1423; phage(gi331028135) | 2e-36 | Click |
| 17 | 1605197..1606093 | PHAGE_Tetras_SI1: hypothetical protein; Nham_1424; phage(gi472342235) | 4e-27 | Click |
| 18 | 1606107..1606553 | PHAGE_Roseob_1: phage cell wall peptidase; Nham_1425; phage(gi331028137) | 1e-32 | Click |
| 19 | 1606553..1610407 | PHAGE_Tetras_SI1: hypothetical protein; Nham_1426; phage(gi472342233) | 8e-39 | Click |
| 20 | 1610414..1611844 | PHAGE_Tetras_SI1: hypothetical protein; Nham_1427; phage(gi472342232) | 4e-12 | Click |
Region 3, total : 9 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(1807409..1808305) | PHAGE_Rhodov_RS1: major head protein; Nham_1607; phage(gi472342916) | 4e-87 | Click |
| 2 | complement(1808302..1809288) | PHAGE_Rhodov_RS1: I protein; Nham_1608; phage(gi472342914) | 4e-28 | Click |
| 3 | complement(1809288..1809653) | PHAGE_Burkho_KS10: hypothetical protein KS10_gp27; Nham_1609; phage(gi198449289) | 5e-09 | Click |
| 4 | complement(1809929..1810300) | hypothetical protein; Nham_1610 | N/A | Click |
| 5 | complement(1810335..1810679) | hypothetical protein; Nham_1611 | N/A | Click |
| 6 | complement(1810676..1811395) | PHAGE_Burkho_KS10: putative transposition protein; Nham_1612; phage(gi198449279) | 7e-06 | Click |
| 7 | complement(1811398..1813401) | hypothetical protein; Nham_1613 | N/A | Click |
| 8 | complement(1813398..1813619) | PHAGE_Burkho_KS10: hypothetical protein KS10_gp14; Nham_1614; phage(gi198449276) | 2e-06 | Click |
| 9 | 1813673..1814197 | PHAGE_Burkho_KS14: gp5; Nham_1615; phage(gi327198274) | 2e-10 | Click |
Region 4, total : 14 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1910619..1910635 | attL TGGCGGGCGGCGTTGAT | N/A | Click |
| 2 | 1918855..1919265 | PHAGE_Rhizob_3: p009; Nham_1715; phage(gi195546540) | 2e-31 | Click |
| 3 | 1919265..1919711 | hypothetical protein; Nham_1716 | N/A | Click |
| 4 | 1919711..1920931 | PHAGE_Azospi_Cd: portal protein; Nham_1717; phage(gi168495134) | 4e-39 | Click |
| 5 | 1920928..1921458 | PHAGE_Azospi_Cd: phage head maturation protease; Nham_1718; phage(gi168495135) | 9e-28 | Click |
| 6 | 1921475..1922629 | PHAGE_Azospi_Cd: Phage major capsid protein; Nham_1719; phage(gi168495136) | 5e-54 | Click |
| 7 | 1922688..1923074 | PHAGE_Azospi_Cd: hypothetical protein APCd_gp34; Nham_1720; phage(gi168495137) | 4e-12 | Click |
| 8 | 1923173..1923319 | hypothetical protein; Nham_1721 | N/A | Click |
| 9 | 1923319..1923669 | PHAGE_Bacill_phi105: hypothetical protein phi105_50; Nham_1722; phage(gi22855043) | 1e-08 | Click |
| 10 | 1923943..1924245 | PHAGE_Entero_mEp235: head-tail connector II; Nham_1723; phage(gi428781817) | 5e-06 | Click |
| 11 | 1924242..1924658 | PHAGE_Lactob_1: terminase small subunit; Nham_1724; phage(gi219563198) | 7e-09 | Click |
| 12 | 1924655..1924993 | PHAGE_Marino_P12026: phage head-tail adaptor; Nham_1725; phage(gi399528325) | 4e-05 | Click |
| 13 | 1924990..1926612 | PHAGE_Burkho_KS9: terminase gp2; Nham_1726; phage(gi255033734) | 5e-52 | Click |
| 14 | 1927555..1928358 | PHAGE_Aggreg_S1249: putative integrase; Nham_1727; phage(gi273809608) | 3e-12 | Click |
| 15 | complement(1929597..1930298) | PHAGE_Lactob_1: Ci-like repressor; Nham_1729; phage(gi219563222) | 6e-10 | Click |
| 16 | 1937768..1937784 | attR TGGCGGGCGGCGTTGAT | N/A | Click |
Region 5, total : 22 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(2233818..2235797) | PHAGE_Megavi_lba: methionyl-tRNA synthetase; Nham_2008; phage(gi448825763) | 6e-35 | Click |
| 2 | complement(2235850..2236890) | PHAGE_Strept_Dp_1: DnaX DNA polymerase III clamp loader complex gamma-tau-delta subunit; Nham_2009; phage(gi327198331) | 7e-07 | Click |
| 3 | complement(2236887..2237579) | PHAGE_Pseudo_EL: putative thymidylate kinase; Nham_2010; phage(gi82701134) | 2e-27 | Click |
| 4 | complement(2237579..2238823) | PHAGE_Stx2_c_1717: penicillin-binding protein 6b; Nham_2011; phage(gi209447203) | 7e-49 | Click |
| 5 | complement(2238940..2239878) | PHAGE_Synech_S_CRM01: RlpA-like lipoprotein precursor; Nham_2012; phage(gi333798269) | 3e-19 | Click |
| 6 | 2240909..2240998 | tRNA | N/A | Click |
| 7 | 2240943..2240954 | attL TGAAAACCGGCG | N/A | Click |
| 8 | 2241144..2242394 | PHAGE_Stenot_S1: putative integrase; Nham_2014; phage(gi213163927) | 5e-78 | Click |
| 9 | complement(2242440..2242853) | hypothetical protein; Nham_2015 | N/A | Click |
| 10 | 2243194..2243688 | hypothetical protein; Nham_2016 | N/A | Click |
| 11 | 2243873..2244379 | hypothetical protein; Nham_2017 | N/A | Click |
| 12 | complement(2244483..2244950) | PHAGE_Staphy_69: ORF039; Nham_2018; phage(gi66395329) | 4e-11 | Click |
| 13 | complement(2244950..2245285) | PHAGE_Marino_P12026: phage head-tail adaptor; Nham_2019; phage(gi399528325) | 3e-07 | Click |
| 14 | complement(2245282..2246910) | PHAGE_Burkho_KS9: terminase gp2; Nham_2020; phage(gi255033734) | 2e-56 | Click |
| 15 | complement(2246913..2247326) | PHAGE_Entero_phiP27: hypothetical protein P27p35; Nham_2021; phage(gi18249899) | 2e-10 | Click |
| 16 | complement(2247326..2247625) | PHAGE_Entero_mEp235: head-tail connector II; Nham_2022; phage(gi428781817) | 6e-07 | Click |
| 17 | complement(2248011..2248364) | PHAGE_Bacill_phi105: hypothetical protein phi105_50; Nham_2023; phage(gi22855043) | 1e-08 | Click |
| 18 | complement(2248590..2248976) | PHAGE_Azospi_Cd: hypothetical protein APCd_gp34; Nham_2024; phage(gi168495137) | 3e-11 | Click |
| 19 | complement(2249036..2250184) | PHAGE_Entero_phiP27: putative major capsid protein; Nham_2025; phage(gi18249904) | 2e-48 | Click |
| 20 | complement(2250192..2250725) | PHAGE_Entero_phiP27: putative prohead protease; Nham_2026; phage(gi18249903) | 1e-28 | Click |
| 21 | complement(2250722..2251942) | PHAGE_Azospi_Cd: portal protein; Nham_2027; phage(gi168495134) | 7e-38 | Click |
| 22 | complement(2252141..2252407) | hypothetical protein; Nham_2028 | N/A | Click |
| 23 | complement(2252386..2253282) | hypothetical protein; Nham_2029 | N/A | Click |
| 24 | complement(2253473..2254255) | hypothetical protein; Nham_2030 | N/A | Click |
| 25 | complement(2254516..2256381) | PHAGE_Mycoba_Cooper: gp52; Nham_2031; phage(gi109392405) | 3e-05 | Click |
| 26 | 2267687..2267698 | attR TGAAAACCGGCG | N/A | Click |
Region 6, total : 14 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 2375101..2375116 | attL TGGTCGGGGCAGCTGG | N/A | Click |
| 2 | 2375272..2376963 | PROPHAGE_Escher_Sakai: putative integrase; Nham_2130; phage(gi15834496) | 1e-31 | Click |
| 3 | complement(2376966..2377505) | hypothetical protein; Nham_2131 | N/A | Click |
| 4 | complement(2377533..2377967) | hypothetical protein; Nham_2132 | N/A | Click |
| 5 | complement(2378523..2378849) | hypothetical protein; Nham_2133 | N/A | Click |
| 6 | complement(2378877..2379224) | hypothetical protein; Nham_2134 | N/A | Click |
| 7 | complement(2379339..2379677) | PROPHAGE_Brucel_1330: IS5 family transposase orfB; Nham_2135; phage(gi23501423) | 4e-39 | Click |
| 8 | complement(2379725..2380093) | PROPHAGE_Brucel_1330: IS5 family transposase orfA; Nham_2136; phage(gi23501422) | 8e-52 | Click |
| 9 | complement(2380122..2380376) | hypothetical protein; Nham_2137 | N/A | Click |
| 10 | complement(2380404..2381267) | hypothetical protein; Nham_2138 | N/A | Click |
| 11 | complement(2381960..2382388) | PHAGE_Klebsi_phiKO2: putative portal protein; Nham_2140; phage(gi46402090) | 3e-06 | Click |
| 12 | complement(2382701..2382777) | tRNA | N/A | Click |
| 13 | 2382701..2382716 | attR TGGTCGGGGCAGCTGG | N/A | Click |
| 14 | complement(2382964..2383521) | PHAGE_Synech_S_SM2: hypothetical protein; Nham_2141; phage(gi326781863) | 4e-06 | Click |
| 15 | complement(2383624..2384277) | PHAGE_Lactoc_bIL312: Csp; Nham_2142; phage(gi13095918) | 2e-06 | Click |
| 16 | complement(2384363..2384614) | hypothetical protein; Nham_2143 | N/A | Click |
| 17 | complement(2384968..2385321) | PHAGE_Europe_virus: hypothetical protein; Nham_2144; phage(gi388260142) | 4e-05 | Click |
Region 7, total : 23 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 2732736..2732752 | attL TGGAGCGGGTGGAGGGA | N/A | Click |
| 2 | 2732871..2734565 | PROPHAGE_Escher_Sakai: putative integrase; Nham_2470; phage(gi15834496) | 1e-18 | Click |
| 3 | complement(2734579..2734920) | hypothetical protein; Nham_2471 | N/A | Click |
| 4 | complement(2735362..2735604) | hypothetical protein; Nham_2472 | N/A | Click |
| 5 | complement(2736007..2736246) | hypothetical protein; Nham_2473 | N/A | Click |
| 6 | complement(2736357..2736662) | hypothetical protein; Nham_2474 | N/A | Click |
| 7 | complement(2736861..2737196) | hypothetical protein; Nham_2475 | N/A | Click |
| 8 | complement(2737658..2737903) | hypothetical protein; Nham_2476 | N/A | Click |
| 9 | complement(2738823..2741021) | PHAGE_Burkho_phiE125: putative tail length tape measure protein; Nham_2477; phage(gi17975176) | 4e-17 | Click |
| 10 | complement(2741018..2741359) | hypothetical protein; Nham_2478 | N/A | Click |
| 11 | complement(2741356..2741760) | Phage protein, HK97, gp10; Nham_2479 | N/A | Click |
| 12 | complement(2741757..2743394) | PHAGE_Burkho_KS9: terminase gp2; Nham_2480; phage(gi255033734) | 4e-47 | Click |
| 13 | complement(2743366..2743758) | PHAGE_Clostr_phi3626: putative terminase small subunit; Nham_2481; phage(gi20065964) | 2e-11 | Click |
| 14 | complement(2743755..2744072) | hypothetical protein; Nham_2482 | N/A | Click |
| 15 | complement(2744069..2744482) | hypothetical protein; Nham_2483 | N/A | Click |
| 16 | complement(2744482..2744763) | PHAGE_Clostr_phi3626: Gp7 protein; Nham_2484; phage(gi20065970) | 4e-05 | Click |
| 17 | complement(2744991..2745428) | PHAGE_Staphy_Twort: ORF076; Nham_2485; phage(gi66391329) | 1e-05 | Click |
| 18 | complement(2745428..2745763) | PHAGE_Bacill_phi105: hypothetical protein phi105_50; Nham_2486; phage(gi22855043) | 3e-06 | Click |
| 19 | complement(2745763..2746341) | hypothetical protein; Nham_2487 | N/A | Click |
| 20 | complement(2746355..2746741) | PHAGE_Azospi_Cd: hypothetical protein APCd_gp34; Nham_2488; phage(gi168495137) | 7e-11 | Click |
| 21 | complement(2746804..2747976) | PHAGE_Azospi_Cd: Phage major capsid protein; Nham_2489; phage(gi168495136) | 3e-42 | Click |
| 22 | complement(2747978..2748475) | PHAGE_Salmon_ST64B: Pro-head protease; Nham_2490; phage(gi23505450) | 2e-14 | Click |
| 23 | complement(2748651..2748977) | hypothetical protein; Nham_2491 | N/A | Click |
| 24 | complement(2748974..2750161) | PHAGE_Entero_mEp235: portal protein; Nham_2492; phage(gi428781813) | 4e-39 | Click |
| 25 | 2750455..2750471 | attR TGGAGCGGGTGGAGGGA | N/A | Click |
Region 8, total : 16 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 3655348..3655359 | attL CCAGGATCGCGT | N/A | Click |
| 2 | 3655484..3656698 | PHAGE_Pseudo_vB_PaeS_PMG1: integrase; Nham_3311; phage(gi374531680) | 6e-15 | Click |
| 3 | 3656859..3657413 | hypothetical protein; Nham_3312 | N/A | Click |
| 4 | 3657775..3658596 | hypothetical protein; Nham_3313 | N/A | Click |
| 5 | 3659218..3659451 | hypothetical protein; Nham_3314 | N/A | Click |
| 6 | complement(3660608..3660838) | hypothetical protein; Nham_3315 | N/A | Click |
| 7 | complement(3661039..3661479) | hypothetical protein; Nham_3316 | N/A | Click |
| 8 | complement(3661479..3662243) | PHAGE_Roseob_1: hypothetical protein RDJLphi1_gp61; Nham_3317; phage(gi331028115) | 6e-17 | Click |
| 9 | complement(3662883..3663968) | PHAGE_Vibrio_vB_VpaM_MAR: putative tail protein; Nham_3318; phage(gi428782753) | 1e-41 | Click |
| 10 | 3664017..3664421 | hypothetical protein; Nham_3319 | N/A | Click |
| 11 | complement(3664418..3664630) | PHAGE_Ralsto_phiRSA1: phage tail X; Nham_3320; phage(gi145708085) | 2e-09 | Click |
| 12 | complement(3664637..3665062) | PROPHAGE_Xylell_Temecula1: phage-related tail protein; Nham_3321; phage(gi28198982) | 3e-12 | Click |
| 13 | complement(3665062..3667293) | PHAGE_Vibrio_vB_VpaM_MAR: tail length tape-measure protein; Nham_3322; phage(gi428782750) | 7e-26 | Click |
| 14 | complement(3667550..3667846) | hypothetical protein; Nham_3323 | N/A | Click |
| 15 | complement(3667843..3668181) | hypothetical protein; Nham_3324 | N/A | Click |
| 16 | complement(3668320..3668835) | PHAGE_Vibrio_vB_VpaM_MAR: tail tube protein; Nham_3325; phage(gi428782747) | 8e-13 | Click |
| 17 | complement(3668891..3670327) | PHAGE_Vibrio_vB_VpaM_MAR: tail sheath protein; Nham_3326; phage(gi428782746) | 8e-28 | Click |
| 18 | 3673051..3673062 | attR CCAGGATCGCGT | N/A | Click |