Definition Staphylococcus aureus subsp. aureus USA300_FPR3757 chromosome, complete genome.
Accession NC_007793
Length 2,872,769
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 23 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 879301..880326  PHAGE_Plankt_PaV_LD: ABC transporter; SAUSA300_0796; phage(gi371496158)  2e-30  Click
2 880319..881014  ABC transporter permease; SAUSA300_0797  N/A  Click
3 881032..881853  ABC transporter substrate-binding protein; SAUSA300_0798  N/A  Click
4 881912..881923  attL    TTGAAAATAAAA  N/A  Click
5 complement(881996..883216)  PHAGE_Staphy_PT1028: ORF002; SAUSA300_0799; phage(gi66395166)  4e-107  Click
6 complement(883304..884032)  PHAGE_Staphy_phiN315: enterotoxin P; SAUSA300_0800; phage(gi30043936)  2e-27  Click
7 complement(884056..884784)  PHAGE_Staphy_phiNM3: enterotoxin type A precursor; SAUSA300_0801; phage(gi118725111)  3e-30  Click
8 complement(884801..885259)  PHAGE_Staphy_55: ORF028; SAUSA300_0802; phage(gi66396141)  7e-67  Click
9 complement(885271..885603)  PHAGE_Lactoc_bIL286: repressor; SAUSA300_0803; phage(gi13095747)  1e-21  Click
10 885817..886059  PHAGE_Lactob_A2: Cro protein; SAUSA300_0804; phage(gi22296546)  6e-23  Click
11 886052..886324  PHAGE_Staphy_PT1028: ORF019; SAUSA300_0805; phage(gi66395183)  7e-42  Click
12 886476..886679  hypothetical protein; SAUSA300_0806  N/A  Click
13 886681..887064  hypothetical protein; SAUSA300_0807  N/A  Click
14 887065..887313  PHAGE_Staphy_PT1028: ORF016; SAUSA300_0808; phage(gi66395180)  6e-26  Click
15 887405..889777  PHAGE_Lactoc_bIL310: helicase; SAUSA300_0809; phage(gi13095886)  2e-100  Click
16 890448..890792  PHAGE_Staphy_PT1028: ORF013; SAUSA300_0810; phage(gi66395177)  8e-09  Click
17 891017..891223  hypothetical protein; SAUSA300_0811  N/A  Click
18 891411..892268  PHAGE_Staphy_2: phage capsid; SAUSA300_0812; phage(gi156603997)  1e-15  Click
19 892503..892943  PHAGE_Staphy_PT1028: ORF010; SAUSA300_0813; phage(gi66395174)  2e-25  Click
20 893372..894340  PHAGE_Clostr_phiC2: putative abortive infection bacteriophage resistance protein ORF 37; SAUSA300_0814; phage(gi134287370)  5e-14  Click
21 complement(894575..895129)  PHAGE_Staphy_71: ORF024; SAUSA300_0815; phage(gi66396064)  5e-69  Click
22 896163..896357  PHAGE_Lactob_LF1: hypothetical protein; SAUSA300_0816; phage(gi418489439)  3e-05  Click
23 complement(896590..897441)  hypothetical protein; SAUSA300_0817  N/A  Click
24 897769..898530  PHAGE_Plankt_PaV_LD: ABC transporter; SAUSA300_0818; phage(gi371496158)  1e-05  Click
25 899940..899951  attR    TTGAAAATAAAA  N/A  Click
Region 2, total : 71 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1538606..1538617  attL    AAATTATTTCAA  N/A  Click
2 1542599..1542610  attL    TTAATTTTATTC  N/A  Click
3 complement(1542605..1543519)  PHAGE_Phthor_granulovirus: hypothetical protein; SAUSA300_1376; phage(gi21686697)  4e-05  Click
4 complement(1543534..1543740)  hypothetical protein; SAUSA300_1377  N/A  Click
5 complement(1543733..1544611)  hypothetical protein; SAUSA300_1378  N/A  Click
6 complement(1544728..1545645)  putative lipoprotein; SAUSA300_1379  N/A  Click
7 complement(1545736..1545921)  PHAGE_Staphy_phiPVL108: hypothetical protein SABPV108_gp59; SAUSA300_1380; phage(gi119443711)  5e-28  Click
8 complement(1546170..1547147)  PHAGE_Staphy_phi5967PVL: Panton-Valentine leukocidin chain S; SAUSA300_1381; phage(gi431810286)  0.0  Click
9 complement(1547149..1548087)  PHAGE_Staphy_phi7401PVL: Panton-Valentine leukocidin chain S precursor; SAUSA300_1382; phage(gi448244684)  0.0  Click
10 complement(1548477..1549931)  PHAGE_Staphy_SMSAP5: putative amidase; SAUSA300_1383; phage(gi422935803)  0.0  Click
11 complement(1549942..1550244)  PHAGE_Staphy_SMSAP5: holin; SAUSA300_1384; phage(gi422935838)  1e-51  Click
12 complement(1550380..1550679)  PHAGE_Staphy_phi7401PVL: hypothetical protein; SAUSA300_1385; phage(gi448244681)  2e-52  Click
13 complement(1550725..1550889)  PHAGE_Staphy_2: hypothetical protein SPTP3102_gp63; SAUSA300_1386; phage(gi156604012)  3e-26  Click
14 complement(1550882..1551271)  PHAGE_Staphy_SMSAP5: hypothetical protein; SAUSA300_1387; phage(gi422935825)  2e-67  Click
15 complement(1551271..1552737)  PHAGE_Staphy_SMSAP5: hypothetical protein; SAUSA300_1388; phage(gi422935802)  0.0  Click
16 complement(1552737..1554647)  PHAGE_Staphy_SMSAP5: minor structural protein; SAUSA300_1389; phage(gi422935800)  0.0  Click
17 complement(1554663..1554953)  PHAGE_Staphy_phiSLT: hypothetical protein phiSLTp54; SAUSA300_1390; phage(gi12719445)  7e-51  Click
18 complement(1554953..1556536)  PHAGE_Staphy_SMSAP5: prophage endopeptidase tail family protein; SAUSA300_1391; phage(gi422935801)  0.0  Click
19 complement(1556545..1557369)  PHAGE_Staphy_2: phage tail tape measure protein like; SAUSA300_1392; phage(gi156604006)  1e-160  Click
20 complement(1557369..1563569)  PHAGE_Staphy_SMSAP5: phage tail tape measure protein; SAUSA300_1393; phage(gi422935797)  0.0  Click
21 complement(1563583..1563741)  PHAGE_Staphy_IPLA35: hypothetical protein SauSIPLA35_gp49; SAUSA300_1394; phage(gi215401157)  5e-24  Click
22 complement(1563783..1564133)  PHAGE_Staphy_12: SLT orf 116b-like protein; SAUSA300_1395; phage(gi29028656)  6e-62  Click
23 complement(1564191..1564646)  PHAGE_Staphy_SMSAP5: major tail protein; SAUSA300_1396; phage(gi422935817)  2e-81  Click
24 complement(1564738..1565379)  PHAGE_Staphy_SMSAP5: major tail protein; SAUSA300_1397; phage(gi422935812)  1e-122  Click
25 complement(1565810..1566211)  PHAGE_Staphy_SMSAP5: putative DNA-binding protein; SAUSA300_1398; phage(gi422935822)  5e-71  Click
26 complement(1566208..1566540)  PHAGE_Staphy_SMSAP5: hypothetical protein; SAUSA300_1399; phage(gi422935831)  1e-59  Click
27 complement(1566552..1566830)  PHAGE_Staphy_2: hypothetical protein SPTP3102_gp49; SAUSA300_1400; phage(gi156603998)  2e-48  Click
28 complement(1566899..1568062)  PHAGE_Staphy_SMSAP5: putative capsid protein; SAUSA300_1401; phage(gi422935806)  0.0  Click
29 complement(1568074..1568847)  PHAGE_Staphy_SMSAP5: protease; SAUSA300_1402; phage(gi422935811)  2e-143  Click
30 complement(1568831..1570069)  PHAGE_Staphy_phi7401PVL: portal protein; SAUSA300_1403; phage(gi448244665)  0.0  Click
31 complement(1570074..1571765)  PHAGE_Staphy_2: putative terminase large subunit; SAUSA300_1404; phage(gi156603994)  0.0  Click
32 complement(1571755..1572060)  PHAGE_Staphy_SMSAP5: terminase-small subunit; SAUSA300_1405; phage(gi422935834)  1e-52  Click
33 complement(1572187..1572501)  PHAGE_Staphy_SMSAP5: HNH endonuclease; SAUSA300_1406; phage(gi422935836)  6e-60  Click
34 complement(1572658..1573095)  PHAGE_Staphy_SMSAP5: phage regulatory protein; SAUSA300_1407; phage(gi422935818)  1e-80  Click
35 complement(1573108..1574379)  PHAGE_Staphy_SMSAP5: helicase; SAUSA300_1408; phage(gi422935805)  0.0  Click
36 complement(1574456..1574746)  PHAGE_Staphy_phi7401PVL: hypothetical protein; SAUSA300_1409; phage(gi448244659)  2e-52  Click
37 complement(1575087..1577534)  PHAGE_Staphy_SMSAP5: virulence-associated protein E; SAUSA300_1410; phage(gi422935798)  0.0  Click
38 complement(1577822..1578022)  PHAGE_Staphy_phiSLT: hypothetical protein phiSLTp34; SAUSA300_1411; phage(gi12719425)  2e-30  Click
39 complement(1578090..1578242)  PHAGE_Staphy_2: hypothetical protein SPTP3102_gp37; SAUSA300_1412; phage(gi156603986)  6e-22  Click
40 complement(1578239..1578625)  PHAGE_Staphy_77: 77ORF031; SAUSA300_1413; phage(gi41189544)  2e-68  Click
41 complement(1578618..1578854)  PHAGE_Staphy_SMSAP5: hypothetical protein; SAUSA300_1414; phage(gi422935837)  2e-40  Click
42 complement(1578847..1579050)  PHAGE_Staphy_2: hypothetical protein SPTP3102_gp34; SAUSA300_1415; phage(gi156603983)  1e-27  Click
43 complement(1579047..1579253)  PHAGE_Staphy_42E: ORF081; SAUSA300_1416; phage(gi66395571)  9e-32  Click
44 complement(1579290..1579826)  PHAGE_Staphy_SMSAP5: dUTP diphosphatase superfamily protein; SAUSA300_1417; phage(gi422935815)  1e-98  Click
45 complement(1579819..1580067)  PHAGE_Staphy_3: hypothetical protein SPTP3103_gp27; SAUSA300_1418; phage(gi156604044)  1e-40  Click
46 complement(1580082..1580324)  PHAGE_Staphy_phiNM3: hypothetical protein; SAUSA300_1419; phage(gi118725080)  1e-40  Click
47 complement(1580542..1580799)  PHAGE_Staphy_2: hypothetical protein SPTP3102_gp24; SAUSA300_1420; phage(gi156603973)  3e-44  Click
48 complement(1580799..1581200)  PHAGE_Staphy_SMSAP5: putative DNA-binding protein; SAUSA300_1421; phage(gi422935821)  7e-75  Click
49 complement(1581200..1581385)  PHAGE_Staphy_2: hypothetical protein SPTP3102_gp22; SAUSA300_1422; phage(gi156603971)  3e-29  Click
50 complement(1581398..1583350)  PHAGE_Staphy_SMSAP5: DNA polymerase; SAUSA300_1423; phage(gi422935799)  0.0  Click
51 complement(1583418..1583975)  PHAGE_Staphy_SMSAP5: hypothetical protein; SAUSA300_1424; phage(gi422935814)  2e-101  Click
52 complement(1584001..1585167)  PHAGE_Staphy_SMSAP5: PF10926 family protein; SAUSA300_1425; phage(gi422935808)  0.0  Click
53 complement(1585164..1585526)  PHAGE_Staphy_SMSAP5: hypothetical protein; SAUSA300_1426; phage(gi422935829)  2e-61  Click
54 complement(1585540..1585800)  PHAGE_Staphy_92: ORF049; SAUSA300_1427; phage(gi66396453)  1e-42  Click
55 complement(1586100..1586417)  PHAGE_Staphy_96: ORF045; SAUSA300_1428; phage(gi66395930)  4e-53  Click
56 complement(1586510..1586605)  PHAGE_Staphy_phiNM3: hypothetical protein; SAUSA300_1429; phage(gi118725067)  5e-12  Click
57 complement(1586683..1586946)  PHAGE_Staphy_phi5967PVL: hypothetical protein; SAUSA300_1430; phage(gi431810252)  2e-48  Click
58 complement(1586971..1587186)  PHAGE_Staphy_IPLA35: hypothetical protein SauSIPLA35_gp10; SAUSA300_1431; phage(gi215401118)  1e-34  Click
59 1587233..1587472  PHAGE_Staphy_IPLA35: hypothetical protein SauSIPLA35_gp09; SAUSA300_1432; phage(gi215401117)  2e-37  Click
60 complement(1587729..1587929)  PHAGE_Staphy_IPLA35: cro; SAUSA300_1433; phage(gi215401115)  2e-30  Click
61 1588081..1588410  PHAGE_Staphy_SMSAP5: putative phage regulatory protein; SAUSA300_1434; phage(gi422935832)  4e-58  Click
62 1588423..1588884  PHAGE_Staphy_SMSAP5: hypothetical protein; SAUSA300_1435; phage(gi422935827)  1e-67  Click
63 1588902..1589336  PHAGE_Staphy_SMSAP5: putative liporotein; SAUSA300_1436; phage(gi422935819)  2e-75  Click
64 complement(1589993..1590607)  PHAGE_Staphy_phi5967PVL: phi PVL ORF 30 analogue; SAUSA300_1437; phage(gi431810246)  3e-113  Click
65 1590733..1591938  PHAGE_Staphy_phi5967PVL: integrase; SAUSA300_1438; phage(gi431810245)  0.0  Click
66 1593994..1594005  attR    TTAATTTTATTC  N/A  Click
67 complement(1594000..1594869)  hypothetical protein; SAUSA300_1440  N/A  Click
68 complement(1595174..1596940)  PHAGE_Feldma_virus: putative hybrid sensor histdine kinase; SAUSA300_1441; phage(gi197322490)  3e-16  Click
69 complement(1596906..1597631)  PHAGE_Feldma_virus: putative sensor histidine kinase; SAUSA300_1442; phage(gi197322366)  5e-07  Click
70 complement(1597764..1598501)  ribosomal large subunit pseudouridine synthase B; SAUSA300_1443  N/A  Click
71 complement(1598494..1599036)  segregation and condensation protein B; SAUSA300_1444  N/A  Click
72 complement(1599029..1599760)  hypothetical protein; SAUSA300_1445  N/A  Click
73 1599852..1600358  hypothetical protein; SAUSA300_1446  N/A  Click
74 complement(1600436..1601323)  PHAGE_Thermu_45: XerD-like integrase; SAUSA300_1447; phage(gi157265299)  5e-22  Click
75 1601859..1601870  attR    AAATTATTTCAA  N/A  Click
Region 3, total : 57 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(2085861..2086211)  PHAGE_Staphy_phiNM3: Staphylococcal complement inhibitor; SAUSA300_1919; phage(gi118725117)  7e-59  Click
2 2086896..2087345  PHAGE_Staphy_phiNM3: chemotaxis-inhibiting protein CHIPS; SAUSA300_1920; phage(gi118725116)  3e-82  Click
3 2087358..2087370  attL    AAATTAAAAGGTA  N/A  Click
4 complement(2087440..2087736)  PHAGE_Staphy_phiNM3: truncated amidase; SAUSA300_1921; phage(gi118725115)  6e-54  Click
5 complement(2088425..2088916)  PHAGE_Staphy_phiNM3: staphylokinase precursor; SAUSA300_1922; phage(gi118725114)  2e-90  Click
6 complement(2089107..2089862)  PHAGE_Staphy_phiNM3: amidase; SAUSA300_1923; phage(gi118725113)  7e-154  Click
7 complement(2089874..2090128)  PHAGE_Staphy_phiNM3: holin; SAUSA300_1924; phage(gi118725112)  3e-43  Click
8 complement(2090666..2090962)  PHAGE_Staphy_phiPV83: phi PVL ORF 17 homologue; SAUSA300_1925; phage(gi9635733)  1e-51  Click
9 complement(2091020..2091307)  PHAGE_Staphy_phiPV83: phi PVL ORF 22 homologue; SAUSA300_1926; phage(gi9635732)  2e-47  Click
10 complement(2091354..2091506)  PHAGE_Staphy_phiNM3: hypothetical protein; SAUSA300_1927; phage(gi118725108)  3e-23  Click
11 complement(2091496..2095281)  PHAGE_Staphy_phiNM3: phage minor structural protein; SAUSA300_1928; phage(gi118725107)  0.0  Click
12 complement(2095297..2096781)  PHAGE_Staphy_phiNM3: hypothetical protein; SAUSA300_1929; phage(gi118725106)  0.0  Click
13 complement(2096778..2101307)  PHAGE_Staphy_phiNM3: phage tail tape measure protein; SAUSA300_1930; phage(gi118725105)  0.0  Click
14 complement(2101364..2101525)  PHAGE_Staphy_phiNM3: hypothetical protein; SAUSA300_1931; phage(gi118725104)  3e-19  Click
15 complement(2101552..2101902)  PHAGE_Staphy_phiNM3: hypothetical protein; SAUSA300_1932; phage(gi118725103)  7e-61  Click
16 complement(2101952..2102092)  PHAGE_Staphy_phiNM3: hypothetical protein; SAUSA300_1933; phage(gi118725102)  3e-18  Click
17 complement(2102218..2102862)  PHAGE_Staphy_phiNM3: hypothetical protein; SAUSA300_1934; phage(gi118725101)  1e-115  Click
18 complement(2103267..2103671)  PHAGE_Staphy_phiNM3: hypothetical protein; SAUSA300_1935; phage(gi118725099)  3e-68  Click
19 complement(2103668..2104030)  PHAGE_Staphy_phiNM3: hypothetical protein; SAUSA300_1936; phage(gi118725098)  2e-67  Click
20 complement(2104288..2104572)  PHAGE_Staphy_phiNM3: hypothetical protein; SAUSA300_1937; phage(gi118725096)  4e-49  Click
21 complement(2104592..2105737)  PHAGE_Staphy_phiNM3: hypothetical protein; SAUSA300_1938; phage(gi118725095)  0.0  Click
22 complement(2105761..2106498)  PHAGE_Staphy_phiNM3: putative Clp protease; SAUSA300_1939; phage(gi118725094)  3e-134  Click
23 complement(2106482..2107669)  PHAGE_Staphy_phiNM3: phage portal protein; SAUSA300_1940; phage(gi118725093)  0.0  Click
24 complement(2107685..2109346)  PHAGE_Staphy_phiNM3: phage terminase; SAUSA300_1941; phage(gi118725092)  0.0  Click
25 complement(2109343..2109777)  PHAGE_Staphy_phiNM3: hypothetical protein; SAUSA300_1942; phage(gi118725091)  3e-60  Click
26 complement(2109817..2110116)  PHAGE_Staphy_phiNM3: hypothetical protein; SAUSA300_1943; phage(gi118725090)  6e-57  Click
27 complement(2110348..2110683)  PHAGE_Staphy_phiNM3: hypothetical protein; SAUSA300_1944; phage(gi118725089)  1e-62  Click
28 complement(2110792..2110992)  PHAGE_Staphy_phiNM3: hypothetical protein; SAUSA300_1945; phage(gi118725088)  5e-32  Click
29 complement(2110992..2111141)  PHAGE_Staphy_phiNM3: hypothetical protein; SAUSA300_1946; phage(gi118725087)  3e-21  Click
30 complement(2111138..2111524)  PHAGE_Staphy_phiNM3: hypothetical protein; SAUSA300_1947; phage(gi118725086)  2e-67  Click
31 complement(2111521..2111727)  PHAGE_Staphy_phiNM3: hypothetical protein; SAUSA300_1948; phage(gi118725085)  3e-33  Click
32 complement(2112006..2112539)  PHAGE_Staphy_3A: ORF020; SAUSA300_1949; phage(gi66395608)  1e-93  Click
33 complement(2112532..2112774)  hypothetical protein; SAUSA300_1950  N/A  Click
34 complement(2112764..2113000)  PHAGE_Staphy_phiNM3: hypothetical protein; SAUSA300_1951; phage(gi118725082)  3e-20  Click
35 complement(2112993..2113364)  PHAGE_Staphy_3: hypothetical protein SPTP3103_gp26; SAUSA300_1952; phage(gi156604043)  7e-51  Click
36 complement(2113373..2113615)  PHAGE_Staphy_phiSLT: phi PVL ORF 51 analogue; SAUSA300_1953; phage(gi12719418)  7e-43  Click
37 complement(2113619..2113996)  PHAGE_Staphy_TEM123: PVL phage protein; SAUSA300_1954; phage(gi388570356)  6e-65  Click
38 complement(2114000..2114404)  PHAGE_Staphy_phiNM3: putative endodeoxyribonuclease RusA; SAUSA300_1955; phage(gi118725078)  7e-74  Click
39 complement(2114413..2114631)  PHAGE_Staphy_phiNM3: hypothetical protein; SAUSA300_1956; phage(gi118725077)  2e-39  Click
40 complement(2114638..2115531)  PHAGE_Staphy_phiNM3: hypothetical protein; SAUSA300_1957; phage(gi118725076)  1e-103  Click
41 complement(2115561..2116031)  PHAGE_Staphy_phiNM3: putative single-strand DNA-binding protein; SAUSA300_1958; phage(gi118725075)  6e-85  Click
42 complement(2116032..2116517)  PHAGE_Staphy_phiNM3: hypothetical protein; SAUSA300_1959; phage(gi118725074)  1e-88  Click
43 complement(2116730..2117650)  PHAGE_Staphy_phiNM3: RecT protein; SAUSA300_1960; phage(gi118725073)  5e-175  Click
44 complement(2117652..2119607)  PHAGE_Staphy_phiNM3: hypothetical protein; SAUSA300_1961; phage(gi118725072)  0.0  Click
45 complement(2119876..2120136)  PHAGE_Staphy_phiNM3: hypothetical protein; SAUSA300_1962; phage(gi118725070)  8e-44  Click
46 complement(2120176..2120436)  PHAGE_Staphy_phiNM3: hypothetical protein; SAUSA300_1963; phage(gi118725069)  9e-27  Click
47 complement(2120689..2121009)  PHAGE_Staphy_phiNM3: hypothetical protein; SAUSA300_1964; phage(gi118725066)  1e-58  Click
48 2121059..2121298  PHAGE_Staphy_IPLA35: hypothetical protein SauSIPLA35_gp09; SAUSA300_1965; phage(gi215401117)  6e-39  Click
49 complement(2121487..2122239)  PHAGE_Staphy_187: ORF017; SAUSA300_1966; phage(gi66395232)  1e-140  Click
50 2122290..2122619  PHAGE_Staphy_phiNM3: hypothetical protein; SAUSA300_1967; phage(gi118725062)  5e-54  Click
51 complement(2122839..2123288)  PHAGE_Staphy_phiNM3: transcriptional regulator; SAUSA300_1968; phage(gi118725060)  8e-44  Click
52 2123236..2123949  PHAGE_Staphy_phiNM3: putative repressor; SAUSA300_1969; phage(gi118725059)  9e-134  Click
53 2123965..2124897  PHAGE_Staphy_phiNM3: probable ATP-dependent helicase; SAUSA300_1970; phage(gi118725058)  2e-176  Click
54 2125708..2126421  PHAGE_Staphy_P954: hypothetical protein; SAUSA300_1971; phage(gi257136358)  2e-134  Click
55 2126248..2126260  attR    AAATTAAAAGGTA  N/A  Click
56 2126612..2127649  PHAGE_Staphy_phiNM3: integrase; SAUSA300_1972; phage(gi118725054)  0.0  Click
57 2127706..2128530  truncated beta-hemolysin; SAUSA300_1973  N/A  Click
58 complement(2128768..2129784)  PHAGE_Staphy_phiPV83: LukF-PV(P83) precursor; SAUSA300_1974; phage(gi9635737)  2e-58  Click
59 complement(2129806..2130861)  PHAGE_Staphy_phiPV83: LukM precursor; SAUSA300_1975; phage(gi9635736)  3e-44  Click