Definition Staphylococcus aureus RF122, complete genome.
Accession NC_007622
Length 2,742,531
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 12 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 309929..311887  PHAGE_Cotesi_bracovirus: hypothetical protein CcBVs6gp3; SAB0257; phage(gi57753417)  2e-05  Click
2 311933..311948  attL    GGGCAAAAAAAGGGCA  N/A  Click
3 complement(311957..313162)  PHAGE_Staphy_SMSAP5: site-specific recombinase; SAB0258c; phage(gi422935807)  0.0  Click
4 complement(313262..313915)  hypothetical protein; SAB0259c  N/A  Click
5 314357..314611  PHAGE_Staphy_SMSAP5: minor structural protein; SAB0260; phage(gi422935800)  5e-44  Click
6 314611..316077  PHAGE_Staphy_IPLA35: hypothetical protein SauSIPLA35_gp55; SAB0261; phage(gi215401163)  0.0  Click
7 316077..316466  PHAGE_Staphy_42E: ORF036; SAB0262; phage(gi66395544)  2e-65  Click
8 316459..316623  PHAGE_Staphy_42E: ORF097; SAB0263; phage(gi66395575)  1e-24  Click
9 316669..316968  PHAGE_Staphy_42E: ORF047; SAB0264; phage(gi66395553)  1e-51  Click
10 317562..318794  PHAGE_Cafete_BV_PW1: putative DNA N6-adenine methyltransferase; SAB0265; phage(gi310831004)  2e-19  Click
11 318846..319148  PHAGE_Staphy_12: holin; SAB0266; phage(gi29028665)  7e-50  Click
12 320847..321056  hypothetical protein; SAB0268  N/A  Click
13 321668..322255  PHAGE_Staphy_88: ORF024; SAB0269; phage(gi66396356)  3e-106  Click
14 322800..322815  attR    GGGCAAAAAAAGGGCA  N/A  Click
Region 2, total : 23 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 388732..388805  attL    ATTGAGTGGGAATAATTATATATAGCAAATGATAGGCTGGAGTTACCGTAATTACGCGGTTTCCAGCCTTTTTT  N/A  Click
2 complement(388840..389976)  PROPHAGE_Oceano_HTE831: integrase; SAB0342c; phage(gi23097608)  3e-85  Click
3 complement(390060..390845)  pathogenicity island protein; SAB0343c  N/A  Click
4 390962..391189  pathogenicity island protein; SAB0344  N/A  Click
5 391235..391495  pathogenicity island protein; SAB0345  N/A  Click
6 391542..391697  pathogenicity island protein; SAB0346  N/A  Click
7 391682..391885  pathogenicity island protein; SAB0347  N/A  Click
8 391887..392270  pathogenicity island protein; SAB0348  N/A  Click
9 392271..392588  PHAGE_Staphy_PT1028: ORF016; SAB0349; phage(gi66395180)  1e-21  Click
10 392652..393521  PHAGE_Staphy_PT1028: ORF003; SAB0350; phage(gi66395167)  3e-163  Click
11 393535..395244  PHAGE_Staphy_PT1028: ORF001; SAB0351; phage(gi66395165)  0.0  Click
12 395575..395955  PHAGE_Staphy_PT1028: ORF013; SAB0352; phage(gi66395177)  6e-71  Click
13 395952..396593  PHAGE_Staphy_PT1028: ORF008; SAB0353; phage(gi66395172)  2e-115  Click
14 396940..397281  PHAGE_Staphy_PT1028: ORF015; SAB0354; phage(gi66395179)  5e-61  Click
15 397293..397871  PHAGE_Clostr_phiCD38_2: tail tape measure; SAB0355; phage(gi333798123)  7e-05  Click
16 397889..398107  pathogenicity island protein; SAB0356  N/A  Click
17 398110..398685  PHAGE_Staphy_PT1028: ORF010; SAB0357; phage(gi66395174)  3e-93  Click
18 398688..399029  PHAGE_Staphy_PT1028: ORF014; SAB0358; phage(gi66395178)  7e-58  Click
19 399026..399595  PHAGE_Staphy_PT1028: ORF009; SAB0359; phage(gi66395173)  9e-104  Click
20 complement(399750..400454)  toxic shock syndrome toxin-1; SAB0360c  N/A  Click
21 400915..401265  PHAGE_Staphy_PT1028: ORF026; SAB0361; phage(gi66395186)  8e-23  Click
22 401383..401895  PHAGE_Staphy_PT1028: ORF011; SAB0362; phage(gi66395175)  1e-91  Click
23 402652..403467  PHAGE_Strept_2: streptococcal superantigen SSA; SAB0363; phage(gi28876204)  8e-85  Click
24 complement(403634..404356)  PHAGE_Staphy_phiNM3: enterotoxin type A precursor; SAB0364c; phage(gi118725111)  6e-30  Click
25 404622..404695  attR    ATTGAGTGGGAATAATTATATATAGCAAATGATAGGCTGGAGTTACCGTAATTACGCGGTTTCCAGCCTTTTTT  N/A  Click
Region 3, total : 69 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1834937..1836283  PHAGE_Strept_1: hypothetical protein EJ-1p03; SAB1691; phage(gi39653677)  9e-85  Click
2 1836300..1836323  attL    CCTACCCTTATTATTTTTTGCCAA  N/A  Click
3 1836565..1836771  PHAGE_Staphy_phiPV83: transposase; SAB1692; phage(gi9635740)  1e-22  Click
4 1836869..1837105  hypothetical protein; SAB1693  N/A  Click
5 1837147..1837902  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0291; SAB1694; phage(gi41179221)  6e-27  Click
6 1838050..1838211  hypothetical protein; SAB1695  N/A  Click
7 complement(1838630..1839247)  PHAGE_Strept_2: streptococcal superantigen SSA; SAB1696c; phage(gi28876204)  6e-29  Click
8 complement(1839538..1840293)  PHAGE_Staphy_phiNM3: enterotoxin type A precursor; SAB1697c; phage(gi118725111)  9e-45  Click
9 complement(1840332..1841117)  PHAGE_Strept_2: streptococcal superantigen SSA; SAB1698c; phage(gi28876204)  8e-76  Click
10 complement(1841271..1841999)  PHAGE_Staphy_phiNM3: enterotoxin type A precursor; SAB1699c; phage(gi118725111)  1e-30  Click
11 complement(1843037..1843801)  PHAGE_Staphy_phiN315: enterotoxin P; SAB1701c; phage(gi30043936)  1e-39  Click
12 complement(1844600..1844854)  PHAGE_Staphy_2: hypothetical protein SPTP3102_gp67; SAB1702c; phage(gi156604016)  3e-19  Click
13 complement(1844930..1846375)  PHAGE_Staphy_IPLA88: endolysin; SAB1703c; phage(gi215401231)  0.0  Click
14 complement(1846356..1846793)  PHAGE_Staphy_IPLA88: putative holin; SAB1704c; phage(gi215401230)  2e-78  Click
15 complement(1846844..1848856)  PHAGE_Staphy_IPLA88: putative tail fiber protein; SAB1705c; phage(gi215401229)  0.0  Click
16 complement(1848869..1850773)  PHAGE_Staphy_IPLA88: putative peptidoglycan hydrolase; SAB1706c; phage(gi215401228)  0.0  Click
17 complement(1850910..1851215)  PHAGE_Staphy_X2: ORF053; SAB1707c; phage(gi66394718)  3e-53  Click
18 complement(1851403..1851810)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp55; SAB1708c; phage(gi215401225)  6e-60  Click
19 complement(1851810..1853633)  PHAGE_Staphy_IPLA88: tail protein; SAB1709c; phage(gi215401224)  0.0  Click
20 complement(1853633..1855543)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp53; SAB1710c; phage(gi215401223)  0.0  Click
21 complement(1855558..1857459)  PHAGE_Staphy_IPLA88: minor structural protein; SAB1711c; phage(gi215401222)  0.0  Click
22 complement(1857468..1858415)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp51; SAB1712c; phage(gi215401221)  0.0  Click
23 complement(1858428..1861892)  PHAGE_Staphy_IPLA88: putative tape measure protein; SAB1713c; phage(gi215401220)  0.0  Click
24 complement(1861909..1862253)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp49; SAB1714c; phage(gi215401219)  4e-61  Click
25 complement(1862283..1862648)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp48; SAB1715c; phage(gi215401218)  8e-62  Click
26 complement(1862710..1863291)  PHAGE_Staphy_IPLA88: major tail protein; SAB1716c; phage(gi215401217)  4e-109  Click
27 complement(1863309..1863692)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp46; SAB1717c; phage(gi215401216)  2e-71  Click
28 complement(1863704..1864051)  PHAGE_Staphy_IPLA88: putative head-tail joining; SAB1718c; phage(gi215401215)  6e-63  Click
29 complement(1864051..1864353)  PHAGE_Staphy_85: hypothetical protein 85ORF165; SAB1719c; phage(gi160253387)  7e-51  Click
30 complement(1864350..1864682)  PHAGE_Staphy_IPLA88: putative DNA packaging protein; SAB1720c; phage(gi215401214)  2e-57  Click
31 complement(1864691..1864978)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp43; SAB1721c; phage(gi215401213)  2e-48  Click
32 complement(1865000..1865974)  PHAGE_Staphy_IPLA88: major head protein; SAB1722c; phage(gi215401212)  0.0  Click
33 complement(1865988..1866602)  PHAGE_Staphy_IPLA88: putative scaffold protein; SAB1723c; phage(gi215401211)  8e-109  Click
34 complement(1866980..1867912)  PHAGE_Staphy_26: phage head morphogenesis protein; SAB1724c; phage(gi304443240)  9e-176  Click
35 complement(1867976..1869517)  PHAGE_Staphy_IPLA88: putative portal protein; SAB1725c; phage(gi215401207)  0.0  Click
36 complement(1869528..1870817)  PHAGE_Staphy_IPLA88: putative terminase large subunit; SAB1726c; phage(gi215401206)  0.0  Click
37 complement(1870820..1871329)  PHAGE_Staphy_IPLA88: putative terminase small subunit; SAB1727c; phage(gi215401205)  1e-91  Click
38 complement(1871502..1871921)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp34; SAB1728c; phage(gi215401204)  1e-73  Click
39 complement(1872083..1872256)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp33; SAB1729c; phage(gi215401203)  7e-26  Click
40 complement(1872253..1872459)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp32; SAB1730c; phage(gi215401202)  4e-33  Click
41 complement(1872456..1872701)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp31; SAB1731c; phage(gi215401201)  5e-38  Click
42 complement(1872738..1873274)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp30; SAB1732c; phage(gi215401200)  6e-99  Click
43 complement(1873422..1873676)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp28; SAB1733c; phage(gi215401198)  2e-42  Click
44 complement(1873736..1873972)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp27; SAB1734c; phage(gi215401197)  6e-41  Click
45 complement(1873981..1874229)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp26; SAB1735c; phage(gi215401196)  7e-45  Click
46 complement(1874229..1874483)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp25; SAB1736c; phage(gi215401195)  2e-44  Click
47 complement(1874483..1874845)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp24; SAB1737c; phage(gi215401194)  2e-67  Click
48 complement(1875036..1875440)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp22; SAB1738c; phage(gi215401192)  8e-76  Click
49 complement(1875451..1875672)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp21; SAB1739c; phage(gi215401191)  3e-37  Click
50 complement(1875675..1875890)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp20; SAB1740c; phage(gi215401190)  4e-37  Click
51 complement(1875887..1877128)  PHAGE_Staphy_IPLA88: putative helicase; SAB1741c; phage(gi215401189)  0.0  Click
52 complement(1877125..1877481)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp18; SAB1742c; phage(gi215401188)  2e-66  Click
53 complement(1877481..1878236)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp17; SAB1743c; phage(gi215401187)  8e-149  Click
54 complement(1878233..1878904)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp16; SAB1744c; phage(gi215401186)  2e-131  Click
55 complement(1878918..1879343)  PHAGE_Staphy_IPLA88: putative ssDNA binding protein; SAB1745c; phage(gi215401185)  3e-78  Click
56 complement(1879346..1879966)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp14; SAB1746c; phage(gi215401184)  2e-117  Click
57 complement(1879959..1880180)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp13; SAB1747c; phage(gi215401183)  1e-37  Click
58 complement(1880190..1880450)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp12; SAB1748c; phage(gi215401182)  6e-46  Click
59 complement(1880455..1880757)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp11; SAB1749c; phage(gi215401181)  8e-51  Click
60 complement(1880822..1881136)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp10; SAB1750c; phage(gi215401180)  7e-56  Click
61 complement(1881141..1881311)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp09; SAB1751c; phage(gi215401179)  5e-27  Click
62 complement(1881326..1881541)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp08; SAB1752c; phage(gi215401178)  1e-37  Click
63 complement(1881557..1882306)  PHAGE_Staphy_IPLA88: anti-repressor; SAB1753c; phage(gi215401177)  3e-139  Click
64 1882363..1882953  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp06; SAB1754; phage(gi215401176)  6e-109  Click
65 complement(1883134..1883922)  PHAGE_Staphy_80alpha: antirepressor; SAB1755c; phage(gi148717850)  1e-146  Click
66 complement(1883938..1884153)  PHAGE_Staphy_X2: ORF032; SAB1756c; phage(gi66394701)  9e-27  Click
67 1884309..1884977  PHAGE_Staphy_phi2958PVL: probable transcriptional repressor; SAB1757; phage(gi209363558)  6e-69  Click
68 1885034..1885534  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp03; SAB1758; phage(gi215401174)  3e-90  Click
69 1885538..1886053  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp02; SAB1759; phage(gi215401173)  5e-98  Click
70 1886070..1886093  attR    CCTACCCTTATTATTTTTTGCCAA  N/A  Click
71 1886112..1887176  PHAGE_Staphy_IPLA88: integrase; SAB1760; phage(gi215401172)  0.0  Click
Region 4, total : 22 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2015873..2015885  attL    TATATTCTAATAT  N/A  Click
2 complement(2028146..2028487)  PHAGE_Staphy_PT1028: ORF014; SAB1895c; phage(gi66395178)  3e-60  Click
3 complement(2028490..2029065)  PHAGE_Staphy_PT1028: ORF010; SAB1896c; phage(gi66395174)  3e-93  Click
4 complement(2029068..2029286)  mobile element-associated protein; SAB1897c  N/A  Click
5 complement(2029304..2029882)  PHAGE_Clostr_phiCD38_2: tail tape measure; SAB1898c; phage(gi333798123)  3e-05  Click
6 complement(2029894..2030235)  PHAGE_Staphy_PT1028: ORF015; SAB1899c; phage(gi66395179)  2e-61  Click
7 complement(2030416..2030541)  hypothetical protein; SAB1900c  N/A  Click
8 complement(2030553..2030726)  hypothetical protein; SAB1901c  N/A  Click
9 complement(2030752..2031393)  PHAGE_Staphy_PT1028: ORF008; SAB1902c; phage(gi66395172)  4e-113  Click
10 complement(2031390..2031770)  PHAGE_Staphy_PT1028: ORF013; SAB1903c; phage(gi66395177)  5e-70  Click
11 complement(2032079..2033788)  PHAGE_Staphy_PT1028: ORF001; SAB1904c; phage(gi66395165)  0.0  Click
12 complement(2033802..2034671)  PHAGE_Staphy_PT1028: ORF003; SAB1905c; phage(gi66395167)  3e-165  Click
13 complement(2034738..2035055)  PHAGE_Staphy_PT1028: ORF016; SAB1906c; phage(gi66395180)  2e-22  Click
14 complement(2035056..2035424)  hypothetical protein; SAB1907c  N/A  Click
15 complement(2035417..2035629)  PHAGE_Staphy_phiMR25: hypothetical protein; SAB1908c; phage(gi189427130)  4e-10  Click
16 complement(2035765..2036082)  hypothetical protein; SAB1909c  N/A  Click
17 complement(2036086..2036274)  PHAGE_Staphy_PT1028: ORF020; SAB1910c; phage(gi66395184)  2e-20  Click
18 2036444..2037166  PHAGE_Staphy_PT1028: ORF006; SAB1911; phage(gi66395170)  8e-40  Click
19 2037180..2038352  PROPHAGE_Oceano_HTE831: integrase; SAB1912; phage(gi23097608)  1e-41  Click
20 complement(2038421..2040037)  PHAGE_Halocy_JM_2012: chaperonin GroEL; SAB1913c; phage(gi389060206)  8e-67  Click
21 complement(2040113..2040397)  PHAGE_Bacill_36: GroES; SAB1914c; phage(gi156564025)  5e-16  Click
22 2040572..2041315  hypothetical protein; SAB1915  N/A  Click
23 complement(2041340..2042638)  PHAGE_Cafete_BV_PW1: hypothetical protein; SAB1916c; phage(gi310831380)  8e-32  Click
24 2052430..2052442  attR    TATATTCTAATAT  N/A  Click