Definition Nitrobacter winogradskyi Nb-255, complete genome.
Accession NC_007406
Length 3,402,093
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 16 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 871370..871381  attL    CGAGGAAGGCCA  N/A  Click
2 complement(871679..872392)  PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfB; Nwi_0782; phage(gi24373866)  2e-12  Click
3 complement(872656..873030)  PROPHAGE_Salmon_LT2: transposase; Nwi_0783; phage(gi16766077)  2e-06  Click
4 complement(873123..873389)  prevent-host-death protein; Nwi_0784  N/A  Click
5 873442..874263  hypothetical protein; Nwi_0785  N/A  Click
6 874270..875250  hypothetical protein; Nwi_0786  N/A  Click
7 complement(875243..875497)  hypothetical protein; Nwi_0787  N/A  Click
8 complement(875639..875827)  hypothetical protein; Nwi_0788  N/A  Click
9 complement(875852..876421)  PHAGE_Vibrio_ICP1: putative Gp5 baseplate hub subunit and tail lysozyme; Nwi_0789; phage(gi325171175)  1e-06  Click
10 complement(876496..876846)  hypothetical protein; Nwi_0790  N/A  Click
11 complement(876859..877557)  PHAGE_Roseob_1: ribonuclease III; Nwi_0791; phage(gi331028139)  2e-22  Click
12 complement(877569..881510)  PHAGE_Roseob_1: gene transfer agent; Nwi_0792; phage(gi331028138)  0.0  Click
13 881609..881872  hypothetical protein; Nwi_0793  N/A  Click
14 complement(881869..882330)  PHAGE_Roseob_1: phage cell wall peptidase; Nwi_0794; phage(gi331028137)  9e-33  Click
15 complement(882327..883214)  PHAGE_Roseob_1: gene transfer agent; Nwi_0795; phage(gi331028136)  1e-73  Click
16 complement(883211..883801)  PHAGE_Roseob_1: putative glycoside hydrolase; Nwi_0796; phage(gi331028135)  4e-33  Click
17 complement(883801..887148)  PHAGE_Xantho_Xp10: tail lenght tape measure protein; Nwi_0797; phage(gi32128430)  7e-33  Click
18 886071..886082  attR    CGAGGAAGGCCA  N/A  Click
Region 2, total : 7 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1204427..1204453  attL    ACCGGTTCGCGTGAAGAAAACGCGTCA  N/A  Click
2 complement(1204501..1205133)  PROPHAGE_Brucel_1330: ISBm1, transposase orfB; Nwi_1095; phage(gi23501425)  3e-38  Click
3 complement(1204905..1205270)  PROPHAGE_Brucel_1330: ISBm1, transposase orfA; Nwi_1096; phage(gi23501424)  2e-49  Click
4 1205403..1206353  PHAGE_Spirop_3x: hypothetical protein SkV1VCR23x_ORF3; Nwi_1097; phage(gi160688404)  1e-05  Click
5 1206403..1207776  FAD dependent oxidoreductase; Nwi_1098  N/A  Click
6 1207965..1209806  PHAGE_Synech_S_SKS1: hypothetical protein; Nwi_1099; phage(gi472340855)  1e-12  Click
7 1209848..1211716  PHAGE_Lactob_1: putative tail fibre protein; Nwi_1100; phage(gi226377752)  4e-05  Click
8 1211738..1213243  PHAGE_Equid__4: envelope glycoprotein J; Nwi_1101; phage(gi9629801)  4e-06  Click
9 1220463..1220489  attR    ACCGGTTCGCGTGAAGAAAACGCGTCA  N/A  Click
Region 3, total : 17 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1276327..1277580  PHAGE_Salmon_ST64B: Major capsid protein precursor; Nwi_1167; phage(gi23505451)  9e-81  Click
2 1277736..1278488  hypothetical protein; Nwi_1168  N/A  Click
3 1278527..1278898  hypothetical protein; Nwi_1169  N/A  Click
4 1279164..1279442  hypothetical protein; Nwi_1170  N/A  Click
5 complement(1279548..1280315)  PHAGE_Neodip_NPV: trypsin-like protein; Nwi_1171; phage(gi48843541)  7e-08  Click
6 1280428..1280991  PHAGE_Entero_mEp235: head-tail connector II; Nwi_1172; phage(gi428781817)  3e-05  Click
7 1281024..1281434  PHAGE_Rhodob_RcapNL: gene transfer agent (GTA) orfg8-like protein; Nwi_1173; phage(gi461474971)  1e-15  Click
8 1281451..1281858  PHAGE_Rhodob_RcapNL: gene transfer aget (GTA) orfg9-like phage major tail protein; Nwi_1174; phage(gi461474972)  3e-22  Click
9 1281874..1282194  gene transfer agent (GTA) like protein; Nwi_1175  N/A  Click
10 1282191..1282403  hypothetical protein; Nwi_1176  N/A  Click
11 1282396..1282980  PHAGE_Entero_2009a: putative bacteriophage tail tape measure protein; Nwi_1177; phage(gi225220098)  4e-14  Click
12 1282984..1283625  PHAGE_Roseob_1: putative glycoside hydrolase; Nwi_1178; phage(gi331028135)  9e-37  Click
13 1283622..1284515  PHAGE_Roseob_1: gene transfer agent; Nwi_1179; phage(gi331028136)  3e-68  Click
14 1284527..1284973  PHAGE_Roseob_1: phage cell wall peptidase; Nwi_1180; phage(gi331028137)  6e-31  Click
15 1284973..1288830  PHAGE_Roseob_1: gene transfer agent; Nwi_1181; phage(gi331028138)  0.0  Click
16 1288837..1290759  PHAGE_Roseob_1: ribonuclease III; Nwi_1182; phage(gi331028139)  5e-26  Click
17 1290907..1291407  PHAGE_Roseob_1: hypothetical protein RDJLphi1_gp61; Nwi_1183; phage(gi331028115)  7e-08  Click
Region 4, total : 26 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1602759..1604765)  PHAGE_Entero_HK544: tail length tape measure protein; Nwi_1471; phage(gi428783229)  7e-33  Click
2 complement(1604767..1606380)  PHAGE_Rhizob_3: terminase large subunit; Nwi_1472; phage(gi195546532)  2e-57  Click
3 complement(1606380..1606775)  PHAGE_Clostr_PhiS63: gp1; Nwi_1473; phage(gi388570631)  9e-11  Click
4 complement(1606775..1607824)  PHAGE_Human__2: EBNA-1; Nwi_1474; phage(gi139424506)  2e-28  Click
5 complement(1607946..1608260)  PHAGE_Marino_P12026: phage head-tail adaptor; Nwi_1475; phage(gi399528325)  7e-05  Click
6 complement(1608257..1608691)  PHAGE_Strept_phiSASD1: gp33; Nwi_1476; phage(gi298103498)  1e-05  Click
7 complement(1608688..1609113)  PHAGE_Strept_phiSASD1: gp32; Nwi_1477; phage(gi298103497)  4e-05  Click
8 complement(1609103..1609423)  PHAGE_Entero_mEp235: head-tail connector II; Nwi_1478; phage(gi428781817)  2e-08  Click
9 complement(1609423..1609725)  hypothetical protein; Nwi_1479  N/A  Click
10 complement(1609728..1610090)  PHAGE_Pseudo_PAJU2: putative endonuclease; Nwi_1480; phage(gi209552497)  1e-18  Click
11 complement(1610161..1610553)  PHAGE_Azospi_Cd: hypothetical protein APCd_gp34; Nwi_1481; phage(gi168495137)  2e-11  Click
12 complement(1610566..1611723)  PHAGE_Azospi_Cd: Phage major capsid protein; Nwi_1482; phage(gi168495136)  6e-49  Click
13 complement(1611729..1612226)  PHAGE_Tetras_SI1: phage prohead protease; Nwi_1483; phage(gi472342256)  2e-14  Click
14 complement(1612408..1612797)  hypothetical protein; Nwi_1484  N/A  Click
15 complement(1612790..1613989)  PHAGE_Azospi_Cd: portal protein; Nwi_1485; phage(gi168495134)  1e-28  Click
16 1614600..1614612  attL    CAGCGAGCCTTCC  N/A  Click
17 complement(1614677..1617067)  PHAGE_Burkho_BcepGomr: BcepGomrgp62; Nwi_1486; phage(gi146329974)  9e-06  Click
18 1617110..1617123  attL    GGGTTTTTCTTTTC  N/A  Click
19 1618354..1619484  PROPHAGE_Mesorh_MAFF303099: bacteriophage integrase; Nwi_1487; phage(gi13470699)  3e-49  Click
20 1619556..1619645  tRNA  N/A  Click
21 complement(1619748..1619987)  hypothetical protein; Nwi_1488  N/A  Click
22 complement(1619994..1620473)  hypothetical protein; Nwi_1489  N/A  Click
23 1620950..1621321  putative lipoprotein; Nwi_1490  N/A  Click
24 1621871..1622245  PROPHAGE_Salmon_LT2: transposase; Nwi_1491; phage(gi16766077)  2e-06  Click
25 1622242..1623222  PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfB; Nwi_1492; phage(gi24373866)  4e-12  Click
26 complement(1623167..1624480)  PHAGE_Salisa_1: hypothetical protein; Nwi_1493; phage(gi388570747)  2e-17  Click
27 complement(1624477..1624740)  hypothetical protein; Nwi_1494  N/A  Click
28 1625100..1625113  attR    GGGTTTTTCTTTTC  N/A  Click
29 complement(1625528..1626124)  hypothetical protein; Nwi_1495  N/A  Click
30 complement(1626121..1627152)  PROPHAGE_Escher_CFT073: P4 family integrase; Nwi_1496; phage(gi26248244)  2e-77  Click
31 1638176..1638188  attR    CAGCGAGCCTTCC  N/A  Click
Region 5, total : 9 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1684998..1685771)  PHAGE_Roseob_1: hypothetical protein RDJLphi1_gp61; Nwi_1540; phage(gi331028115)  1e-16  Click
2 1686140..1687627  PHAGE_Lactob_phiAT3: putative transposase B; Nwi_1541; phage(gi48697274)  6e-13  Click
3 complement(1687660..1688919)  PHAGE_Salmon_ST64B: Major capsid protein precursor; Nwi_1542; phage(gi23505451)  1e-78  Click
4 complement(1688930..1689775)  PHAGE_Entero_mEp235: head maturation protease; Nwi_1543; phage(gi428781814)  2e-63  Click
5 complement(1689753..1691027)  PHAGE_Entero_mEp235: portal protein; Nwi_1544; phage(gi428781813)  4e-61  Click
6 complement(1691040..1692806)  PHAGE_Entero_mEp235: terminase large subunit; Nwi_1545; phage(gi428781812)  5e-57  Click
7 complement(1692841..1694253)  PHAGE_Strept_1: transferase; Nwi_1546; phage(gi39653711)  4e-53  Click
8 complement(1694228..1694698)  hypothetical protein; Nwi_1547  N/A  Click
9 complement(1694944..1695330)  PHAGE_Pseudo_PAJU2: putative endonuclease; Nwi_1548; phage(gi209552497)  7e-19  Click
Region 6, total : 19 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1757931..1757943  attL    CCGCGACCTCCAT  N/A  Click
2 complement(1761930..1763945)  PHAGE_Entero_mEp234: tail length tape measure protein H; Nwi_1615; phage(gi428782268)  2e-32  Click
3 complement(1763947..1765560)  PHAGE_Rhizob_3: terminase large subunit; Nwi_1616; phage(gi195546532)  4e-56  Click
4 complement(1765560..1765955)  PHAGE_Clostr_PhiS63: gp1; Nwi_1617; phage(gi388570631)  4e-11  Click
5 complement(1765955..1767004)  PHAGE_Human__4: EBNA-1; Nwi_1618; phage(gi82503233)  1e-26  Click
6 complement(1767111..1767440)  PHAGE_Marino_P12026: phage head-tail adaptor; Nwi_1619; phage(gi399528325)  2e-06  Click
7 complement(1767422..1767856)  PHAGE_Strept_phiSASD1: gp33; Nwi_1620; phage(gi298103498)  1e-05  Click
8 complement(1767853..1768278)  PHAGE_Strept_phiSASD1: gp32; Nwi_1621; phage(gi298103497)  4e-05  Click
9 complement(1768268..1768588)  PHAGE_Entero_mEp235: head-tail connector II; Nwi_1622; phage(gi428781817)  4e-07  Click
10 complement(1768585..1768896)  hypothetical protein; Nwi_1623  N/A  Click
11 complement(1769326..1769718)  PHAGE_Azospi_Cd: hypothetical protein APCd_gp34; Nwi_1624; phage(gi168495137)  2e-11  Click
12 complement(1769731..1770888)  PHAGE_Azospi_Cd: Phage major capsid protein; Nwi_1625; phage(gi168495136)  6e-49  Click
13 complement(1770894..1771391)  PHAGE_Tetras_SI1: phage prohead protease; Nwi_1626; phage(gi472342256)  2e-14  Click
14 complement(1771573..1771962)  hypothetical protein; Nwi_1627  N/A  Click
15 complement(1771955..1773133)  PHAGE_Azospi_Cd: portal protein; Nwi_1628; phage(gi168495134)  4e-30  Click
16 complement(1773840..1775840)  PHAGE_Brucel_Tb: putative bifunctional DNA primase/polymerase; Nwi_1629; phage(gi418487743)  7e-14  Click
17 complement(1775898..1776137)  hypothetical protein; Nwi_1630  N/A  Click
18 complement(1776134..1776400)  hypothetical protein; Nwi_1631  N/A  Click
19 complement(1776397..1776714)  hypothetical protein; Nwi_1632  N/A  Click
20 1776402..1776414  attR    CCGCGACCTCCAT  N/A  Click
21 complement(1776736..1777824)  PROPHAGE_Xantho_33913: phage-related integrase; Nwi_1633; phage(gi77747810)  5e-21  Click
Region 7, total : 23 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 3047051..3047066  attL    CGCATTTTCTTGCGGC  N/A  Click
2 complement(3056107..3057057)  PHAGE_Spirop_3x: hypothetical protein SkV1VCR23x_ORF3; Nwi_2818; phage(gi160688404)  1e-05  Click
3 complement(3057115..3058095)  PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfB; Nwi_2819; phage(gi24373866)  4e-12  Click
4 complement(3058092..3058466)  PROPHAGE_Salmon_LT2: transposase; Nwi_2820; phage(gi16766077)  2e-06  Click
5 3058571..3058834  PROPHAGE_Brucel_1330: ISBm1, transposase orfA; Nwi_2821; phage(gi23501424)  3e-34  Click
6 3058876..3059259  PROPHAGE_Brucel_1330: ISBm1, transposase orfB; Nwi_2822; phage(gi23501425)  6e-30  Click
7 3059315..3059713  PROPHAGE_Brucel_1330: ISBm1, transposase orfA; Nwi_2823; phage(gi23501424)  7e-26  Click
8 3059728..3060096  PROPHAGE_Brucel_1330: ISBm1, transposase orfB; Nwi_2824; phage(gi23501425)  1e-21  Click
9 complement(3060211..3060483)  hypothetical protein; Nwi_2825  N/A  Click
10 complement(3060486..3061571)  PHAGE_Gordon_GTE7: hypothetical protein; Nwi_2826; phage(gi358356866)  1e-05  Click
11 complement(3061624..3062334)  hypothetical protein; Nwi_2827  N/A  Click
12 complement(3062340..3063005)  hypothetical protein; Nwi_2828  N/A  Click
13 complement(3063138..3063770)  hypothetical protein; Nwi_2829  N/A  Click
14 complement(3063767..3064078)  hypothetical protein; Nwi_2830  N/A  Click
15 complement(3064078..3064413)  PHAGE_Entero_mEp213: hypothetical protein; Nwi_2831; phage(gi428782595)  1e-08  Click
16 3064425..3064438  attL    TTTCGGAAAAGCGA  N/A  Click
17 3064879..3065343  prophage LambdaMc01, site-specific recombinase resolvase family protein; Nwi_2833  N/A  Click
18 3065475..3065858  hypothetical protein; Nwi_2834  N/A  Click
19 complement(3065862..3066695)  hypothetical protein; Nwi_2835  N/A  Click
20 complement(3066705..3067226)  hypothetical protein; Nwi_2836  N/A  Click
21 complement(3067306..3067887)  hypothetical protein; Nwi_2837  N/A  Click
22 complement(3067887..3068654)  PHAGE_Mycoba_Che9c: gp68; Nwi_2838; phage(gi29566174)  4e-53  Click
23 complement(3069030..3069119)  tRNA  N/A  Click
24 complement(3069234..3069695)  PHAGE_Spirop_3x: hypothetical protein SkV1VCR23x_ORF3; Nwi_2839; phage(gi160688404)  4e-06  Click
25 3069897..3070175  hypothetical protein; Nwi_2840  N/A  Click
26 3070201..3071211  PHAGE_Bacill_phBC6A51: Site-specific recombinase; Nwi_2841; phage(gi31415812)  2e-22  Click
27 3072242..3072255  attR    TTTCGGAAAAGCGA  N/A  Click
28 3080968..3080983  attR    CGCATTTTCTTGCGGC  N/A  Click