Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
---|---|
Accession | NC_007406 |
Length | 3,402,093 |
Legend
Hits against Virus and prophage DB | |
Hits against Bacterial DB or GenBank file |
Region 1, total : 16 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 871370..871381 | attL CGAGGAAGGCCA | N/A | Click |
2 | complement(871679..872392) | PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfB; Nwi_0782; phage(gi24373866) | 2e-12 | Click |
3 | complement(872656..873030) | PROPHAGE_Salmon_LT2: transposase; Nwi_0783; phage(gi16766077) | 2e-06 | Click |
4 | complement(873123..873389) | prevent-host-death protein; Nwi_0784 | N/A | Click |
5 | 873442..874263 | hypothetical protein; Nwi_0785 | N/A | Click |
6 | 874270..875250 | hypothetical protein; Nwi_0786 | N/A | Click |
7 | complement(875243..875497) | hypothetical protein; Nwi_0787 | N/A | Click |
8 | complement(875639..875827) | hypothetical protein; Nwi_0788 | N/A | Click |
9 | complement(875852..876421) | PHAGE_Vibrio_ICP1: putative Gp5 baseplate hub subunit and tail lysozyme; Nwi_0789; phage(gi325171175) | 1e-06 | Click |
10 | complement(876496..876846) | hypothetical protein; Nwi_0790 | N/A | Click |
11 | complement(876859..877557) | PHAGE_Roseob_1: ribonuclease III; Nwi_0791; phage(gi331028139) | 2e-22 | Click |
12 | complement(877569..881510) | PHAGE_Roseob_1: gene transfer agent; Nwi_0792; phage(gi331028138) | 0.0 | Click |
13 | 881609..881872 | hypothetical protein; Nwi_0793 | N/A | Click |
14 | complement(881869..882330) | PHAGE_Roseob_1: phage cell wall peptidase; Nwi_0794; phage(gi331028137) | 9e-33 | Click |
15 | complement(882327..883214) | PHAGE_Roseob_1: gene transfer agent; Nwi_0795; phage(gi331028136) | 1e-73 | Click |
16 | complement(883211..883801) | PHAGE_Roseob_1: putative glycoside hydrolase; Nwi_0796; phage(gi331028135) | 4e-33 | Click |
17 | complement(883801..887148) | PHAGE_Xantho_Xp10: tail lenght tape measure protein; Nwi_0797; phage(gi32128430) | 7e-33 | Click |
18 | 886071..886082 | attR CGAGGAAGGCCA | N/A | Click |
Region 2, total : 7 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1204427..1204453 | attL ACCGGTTCGCGTGAAGAAAACGCGTCA | N/A | Click |
2 | complement(1204501..1205133) | PROPHAGE_Brucel_1330: ISBm1, transposase orfB; Nwi_1095; phage(gi23501425) | 3e-38 | Click |
3 | complement(1204905..1205270) | PROPHAGE_Brucel_1330: ISBm1, transposase orfA; Nwi_1096; phage(gi23501424) | 2e-49 | Click |
4 | 1205403..1206353 | PHAGE_Spirop_3x: hypothetical protein SkV1VCR23x_ORF3; Nwi_1097; phage(gi160688404) | 1e-05 | Click |
5 | 1206403..1207776 | FAD dependent oxidoreductase; Nwi_1098 | N/A | Click |
6 | 1207965..1209806 | PHAGE_Synech_S_SKS1: hypothetical protein; Nwi_1099; phage(gi472340855) | 1e-12 | Click |
7 | 1209848..1211716 | PHAGE_Lactob_1: putative tail fibre protein; Nwi_1100; phage(gi226377752) | 4e-05 | Click |
8 | 1211738..1213243 | PHAGE_Equid__4: envelope glycoprotein J; Nwi_1101; phage(gi9629801) | 4e-06 | Click |
9 | 1220463..1220489 | attR ACCGGTTCGCGTGAAGAAAACGCGTCA | N/A | Click |
Region 3, total : 17 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1276327..1277580 | PHAGE_Salmon_ST64B: Major capsid protein precursor; Nwi_1167; phage(gi23505451) | 9e-81 | Click |
2 | 1277736..1278488 | hypothetical protein; Nwi_1168 | N/A | Click |
3 | 1278527..1278898 | hypothetical protein; Nwi_1169 | N/A | Click |
4 | 1279164..1279442 | hypothetical protein; Nwi_1170 | N/A | Click |
5 | complement(1279548..1280315) | PHAGE_Neodip_NPV: trypsin-like protein; Nwi_1171; phage(gi48843541) | 7e-08 | Click |
6 | 1280428..1280991 | PHAGE_Entero_mEp235: head-tail connector II; Nwi_1172; phage(gi428781817) | 3e-05 | Click |
7 | 1281024..1281434 | PHAGE_Rhodob_RcapNL: gene transfer agent (GTA) orfg8-like protein; Nwi_1173; phage(gi461474971) | 1e-15 | Click |
8 | 1281451..1281858 | PHAGE_Rhodob_RcapNL: gene transfer aget (GTA) orfg9-like phage major tail protein; Nwi_1174; phage(gi461474972) | 3e-22 | Click |
9 | 1281874..1282194 | gene transfer agent (GTA) like protein; Nwi_1175 | N/A | Click |
10 | 1282191..1282403 | hypothetical protein; Nwi_1176 | N/A | Click |
11 | 1282396..1282980 | PHAGE_Entero_2009a: putative bacteriophage tail tape measure protein; Nwi_1177; phage(gi225220098) | 4e-14 | Click |
12 | 1282984..1283625 | PHAGE_Roseob_1: putative glycoside hydrolase; Nwi_1178; phage(gi331028135) | 9e-37 | Click |
13 | 1283622..1284515 | PHAGE_Roseob_1: gene transfer agent; Nwi_1179; phage(gi331028136) | 3e-68 | Click |
14 | 1284527..1284973 | PHAGE_Roseob_1: phage cell wall peptidase; Nwi_1180; phage(gi331028137) | 6e-31 | Click |
15 | 1284973..1288830 | PHAGE_Roseob_1: gene transfer agent; Nwi_1181; phage(gi331028138) | 0.0 | Click |
16 | 1288837..1290759 | PHAGE_Roseob_1: ribonuclease III; Nwi_1182; phage(gi331028139) | 5e-26 | Click |
17 | 1290907..1291407 | PHAGE_Roseob_1: hypothetical protein RDJLphi1_gp61; Nwi_1183; phage(gi331028115) | 7e-08 | Click |
Region 4, total : 26 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | complement(1602759..1604765) | PHAGE_Entero_HK544: tail length tape measure protein; Nwi_1471; phage(gi428783229) | 7e-33 | Click |
2 | complement(1604767..1606380) | PHAGE_Rhizob_3: terminase large subunit; Nwi_1472; phage(gi195546532) | 2e-57 | Click |
3 | complement(1606380..1606775) | PHAGE_Clostr_PhiS63: gp1; Nwi_1473; phage(gi388570631) | 9e-11 | Click |
4 | complement(1606775..1607824) | PHAGE_Human__2: EBNA-1; Nwi_1474; phage(gi139424506) | 2e-28 | Click |
5 | complement(1607946..1608260) | PHAGE_Marino_P12026: phage head-tail adaptor; Nwi_1475; phage(gi399528325) | 7e-05 | Click |
6 | complement(1608257..1608691) | PHAGE_Strept_phiSASD1: gp33; Nwi_1476; phage(gi298103498) | 1e-05 | Click |
7 | complement(1608688..1609113) | PHAGE_Strept_phiSASD1: gp32; Nwi_1477; phage(gi298103497) | 4e-05 | Click |
8 | complement(1609103..1609423) | PHAGE_Entero_mEp235: head-tail connector II; Nwi_1478; phage(gi428781817) | 2e-08 | Click |
9 | complement(1609423..1609725) | hypothetical protein; Nwi_1479 | N/A | Click |
10 | complement(1609728..1610090) | PHAGE_Pseudo_PAJU2: putative endonuclease; Nwi_1480; phage(gi209552497) | 1e-18 | Click |
11 | complement(1610161..1610553) | PHAGE_Azospi_Cd: hypothetical protein APCd_gp34; Nwi_1481; phage(gi168495137) | 2e-11 | Click |
12 | complement(1610566..1611723) | PHAGE_Azospi_Cd: Phage major capsid protein; Nwi_1482; phage(gi168495136) | 6e-49 | Click |
13 | complement(1611729..1612226) | PHAGE_Tetras_SI1: phage prohead protease; Nwi_1483; phage(gi472342256) | 2e-14 | Click |
14 | complement(1612408..1612797) | hypothetical protein; Nwi_1484 | N/A | Click |
15 | complement(1612790..1613989) | PHAGE_Azospi_Cd: portal protein; Nwi_1485; phage(gi168495134) | 1e-28 | Click |
16 | 1614600..1614612 | attL CAGCGAGCCTTCC | N/A | Click |
17 | complement(1614677..1617067) | PHAGE_Burkho_BcepGomr: BcepGomrgp62; Nwi_1486; phage(gi146329974) | 9e-06 | Click |
18 | 1617110..1617123 | attL GGGTTTTTCTTTTC | N/A | Click |
19 | 1618354..1619484 | PROPHAGE_Mesorh_MAFF303099: bacteriophage integrase; Nwi_1487; phage(gi13470699) | 3e-49 | Click |
20 | 1619556..1619645 | tRNA | N/A | Click |
21 | complement(1619748..1619987) | hypothetical protein; Nwi_1488 | N/A | Click |
22 | complement(1619994..1620473) | hypothetical protein; Nwi_1489 | N/A | Click |
23 | 1620950..1621321 | putative lipoprotein; Nwi_1490 | N/A | Click |
24 | 1621871..1622245 | PROPHAGE_Salmon_LT2: transposase; Nwi_1491; phage(gi16766077) | 2e-06 | Click |
25 | 1622242..1623222 | PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfB; Nwi_1492; phage(gi24373866) | 4e-12 | Click |
26 | complement(1623167..1624480) | PHAGE_Salisa_1: hypothetical protein; Nwi_1493; phage(gi388570747) | 2e-17 | Click |
27 | complement(1624477..1624740) | hypothetical protein; Nwi_1494 | N/A | Click |
28 | 1625100..1625113 | attR GGGTTTTTCTTTTC | N/A | Click |
29 | complement(1625528..1626124) | hypothetical protein; Nwi_1495 | N/A | Click |
30 | complement(1626121..1627152) | PROPHAGE_Escher_CFT073: P4 family integrase; Nwi_1496; phage(gi26248244) | 2e-77 | Click |
31 | 1638176..1638188 | attR CAGCGAGCCTTCC | N/A | Click |
Region 5, total : 9 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | complement(1684998..1685771) | PHAGE_Roseob_1: hypothetical protein RDJLphi1_gp61; Nwi_1540; phage(gi331028115) | 1e-16 | Click |
2 | 1686140..1687627 | PHAGE_Lactob_phiAT3: putative transposase B; Nwi_1541; phage(gi48697274) | 6e-13 | Click |
3 | complement(1687660..1688919) | PHAGE_Salmon_ST64B: Major capsid protein precursor; Nwi_1542; phage(gi23505451) | 1e-78 | Click |
4 | complement(1688930..1689775) | PHAGE_Entero_mEp235: head maturation protease; Nwi_1543; phage(gi428781814) | 2e-63 | Click |
5 | complement(1689753..1691027) | PHAGE_Entero_mEp235: portal protein; Nwi_1544; phage(gi428781813) | 4e-61 | Click |
6 | complement(1691040..1692806) | PHAGE_Entero_mEp235: terminase large subunit; Nwi_1545; phage(gi428781812) | 5e-57 | Click |
7 | complement(1692841..1694253) | PHAGE_Strept_1: transferase; Nwi_1546; phage(gi39653711) | 4e-53 | Click |
8 | complement(1694228..1694698) | hypothetical protein; Nwi_1547 | N/A | Click |
9 | complement(1694944..1695330) | PHAGE_Pseudo_PAJU2: putative endonuclease; Nwi_1548; phage(gi209552497) | 7e-19 | Click |
Region 6, total : 19 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1757931..1757943 | attL CCGCGACCTCCAT | N/A | Click |
2 | complement(1761930..1763945) | PHAGE_Entero_mEp234: tail length tape measure protein H; Nwi_1615; phage(gi428782268) | 2e-32 | Click |
3 | complement(1763947..1765560) | PHAGE_Rhizob_3: terminase large subunit; Nwi_1616; phage(gi195546532) | 4e-56 | Click |
4 | complement(1765560..1765955) | PHAGE_Clostr_PhiS63: gp1; Nwi_1617; phage(gi388570631) | 4e-11 | Click |
5 | complement(1765955..1767004) | PHAGE_Human__4: EBNA-1; Nwi_1618; phage(gi82503233) | 1e-26 | Click |
6 | complement(1767111..1767440) | PHAGE_Marino_P12026: phage head-tail adaptor; Nwi_1619; phage(gi399528325) | 2e-06 | Click |
7 | complement(1767422..1767856) | PHAGE_Strept_phiSASD1: gp33; Nwi_1620; phage(gi298103498) | 1e-05 | Click |
8 | complement(1767853..1768278) | PHAGE_Strept_phiSASD1: gp32; Nwi_1621; phage(gi298103497) | 4e-05 | Click |
9 | complement(1768268..1768588) | PHAGE_Entero_mEp235: head-tail connector II; Nwi_1622; phage(gi428781817) | 4e-07 | Click |
10 | complement(1768585..1768896) | hypothetical protein; Nwi_1623 | N/A | Click |
11 | complement(1769326..1769718) | PHAGE_Azospi_Cd: hypothetical protein APCd_gp34; Nwi_1624; phage(gi168495137) | 2e-11 | Click |
12 | complement(1769731..1770888) | PHAGE_Azospi_Cd: Phage major capsid protein; Nwi_1625; phage(gi168495136) | 6e-49 | Click |
13 | complement(1770894..1771391) | PHAGE_Tetras_SI1: phage prohead protease; Nwi_1626; phage(gi472342256) | 2e-14 | Click |
14 | complement(1771573..1771962) | hypothetical protein; Nwi_1627 | N/A | Click |
15 | complement(1771955..1773133) | PHAGE_Azospi_Cd: portal protein; Nwi_1628; phage(gi168495134) | 4e-30 | Click |
16 | complement(1773840..1775840) | PHAGE_Brucel_Tb: putative bifunctional DNA primase/polymerase; Nwi_1629; phage(gi418487743) | 7e-14 | Click |
17 | complement(1775898..1776137) | hypothetical protein; Nwi_1630 | N/A | Click |
18 | complement(1776134..1776400) | hypothetical protein; Nwi_1631 | N/A | Click |
19 | complement(1776397..1776714) | hypothetical protein; Nwi_1632 | N/A | Click |
20 | 1776402..1776414 | attR CCGCGACCTCCAT | N/A | Click |
21 | complement(1776736..1777824) | PROPHAGE_Xantho_33913: phage-related integrase; Nwi_1633; phage(gi77747810) | 5e-21 | Click |
Region 7, total : 23 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 3047051..3047066 | attL CGCATTTTCTTGCGGC | N/A | Click |
2 | complement(3056107..3057057) | PHAGE_Spirop_3x: hypothetical protein SkV1VCR23x_ORF3; Nwi_2818; phage(gi160688404) | 1e-05 | Click |
3 | complement(3057115..3058095) | PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfB; Nwi_2819; phage(gi24373866) | 4e-12 | Click |
4 | complement(3058092..3058466) | PROPHAGE_Salmon_LT2: transposase; Nwi_2820; phage(gi16766077) | 2e-06 | Click |
5 | 3058571..3058834 | PROPHAGE_Brucel_1330: ISBm1, transposase orfA; Nwi_2821; phage(gi23501424) | 3e-34 | Click |
6 | 3058876..3059259 | PROPHAGE_Brucel_1330: ISBm1, transposase orfB; Nwi_2822; phage(gi23501425) | 6e-30 | Click |
7 | 3059315..3059713 | PROPHAGE_Brucel_1330: ISBm1, transposase orfA; Nwi_2823; phage(gi23501424) | 7e-26 | Click |
8 | 3059728..3060096 | PROPHAGE_Brucel_1330: ISBm1, transposase orfB; Nwi_2824; phage(gi23501425) | 1e-21 | Click |
9 | complement(3060211..3060483) | hypothetical protein; Nwi_2825 | N/A | Click |
10 | complement(3060486..3061571) | PHAGE_Gordon_GTE7: hypothetical protein; Nwi_2826; phage(gi358356866) | 1e-05 | Click |
11 | complement(3061624..3062334) | hypothetical protein; Nwi_2827 | N/A | Click |
12 | complement(3062340..3063005) | hypothetical protein; Nwi_2828 | N/A | Click |
13 | complement(3063138..3063770) | hypothetical protein; Nwi_2829 | N/A | Click |
14 | complement(3063767..3064078) | hypothetical protein; Nwi_2830 | N/A | Click |
15 | complement(3064078..3064413) | PHAGE_Entero_mEp213: hypothetical protein; Nwi_2831; phage(gi428782595) | 1e-08 | Click |
16 | 3064425..3064438 | attL TTTCGGAAAAGCGA | N/A | Click |
17 | 3064879..3065343 | prophage LambdaMc01, site-specific recombinase resolvase family protein; Nwi_2833 | N/A | Click |
18 | 3065475..3065858 | hypothetical protein; Nwi_2834 | N/A | Click |
19 | complement(3065862..3066695) | hypothetical protein; Nwi_2835 | N/A | Click |
20 | complement(3066705..3067226) | hypothetical protein; Nwi_2836 | N/A | Click |
21 | complement(3067306..3067887) | hypothetical protein; Nwi_2837 | N/A | Click |
22 | complement(3067887..3068654) | PHAGE_Mycoba_Che9c: gp68; Nwi_2838; phage(gi29566174) | 4e-53 | Click |
23 | complement(3069030..3069119) | tRNA | N/A | Click |
24 | complement(3069234..3069695) | PHAGE_Spirop_3x: hypothetical protein SkV1VCR23x_ORF3; Nwi_2839; phage(gi160688404) | 4e-06 | Click |
25 | 3069897..3070175 | hypothetical protein; Nwi_2840 | N/A | Click |
26 | 3070201..3071211 | PHAGE_Bacill_phBC6A51: Site-specific recombinase; Nwi_2841; phage(gi31415812) | 2e-22 | Click |
27 | 3072242..3072255 | attR TTTCGGAAAAGCGA | N/A | Click |
28 | 3080968..3080983 | attR CGCATTTTCTTGCGGC | N/A | Click |