Definition Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305, complete genome.
Accession NC_007350
Length 2,516,575
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 59 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1702042..1702245  PHAGE_Canary_virus: CNPV087 putative glutathione peroxidase; SSP1637; phage(gi40556025)  5e-09  Click
2 complement(1703512..1704462)  PHAGE_Acanth_moumouvirus: putative triacylglycerol lipase; SSP1638; phage(gi441432487)  3e-63  Click
3 complement(1704720..1704881)  hypothetical protein; SSP1639  N/A  Click
4 complement(1705181..1706119)  PHAGE_Strept_7201: ORF4; SSP1640; phage(gi9634630)  5e-24  Click
5 complement(1706278..1706952)  PROPHAGE_Brucel_1330: transposase, putative; SSP1641; phage(gi23502708)  3e-35  Click
6 1706694..1706706  attL    TCCATTTTCCTTT  N/A  Click
7 1707084..1707812  PHAGE_Staphy_3: integrase; SSP1642; phage(gi156604018)  3e-83  Click
8 complement(1707942..1708018)  tRNA  N/A  Click
9 complement(1708307..1708816)  hypothetical protein; SSP1643  N/A  Click
10 complement(1708813..1709397)  PHAGE_Uganda_virus: polyprotein; SSP1644; phage(gi314998982)  3e-14  Click
11 complement(1709400..1710209)  glutamate racemase; SSP1645  N/A  Click
12 complement(1710419..1711240)  succinate dehydrogenase iron-sulfur subunit; SSP1646  N/A  Click
13 complement(1711243..1713006)  succinate dehydrogenase flavoprotein subunit; SSP1647  N/A  Click
14 complement(1713051..1713662)  succinate dehydrogenase cytochrome b subunit; SSP1648  N/A  Click
15 complement(1713990..1715777)  excinuclease ABC subunit C; SSP1649  N/A  Click
16 complement(1715983..1716297)  PHAGE_Megavi_chiliensis: thioredoxin-like protein; SSP1650; phage(gi363540574)  9e-11  Click
17 complement(1716379..1718727)  PHAGE_Cafete_BV_PW1: putative DNA mismatch repair protein MutS; SSP1651; phage(gi310831476)  1e-11  Click
18 complement(1718737..1720449)  PHAGE_Acanth_mimivirus: probable DNA polymerase family X; SSP1652; phage(gi311977701)  3e-14  Click
19 complement(1720561..1721082)  hypothetical protein; SSP1653  N/A  Click
20 complement(1721079..1721348)  hypothetical protein; SSP1654  N/A  Click
21 1721657..1722589  ribonuclease HIII; SSP1655  N/A  Click
22 complement(1722889..1725291)  phenylalanyl-tRNA synthetase subunit beta; SSP1656  N/A  Click
23 complement(1725291..1726349)  phenylalanyl-tRNA synthetase subunit alpha; SSP1657  N/A  Click
24 complement(1726682..1727422)  rRNA methylase; SSP1658  N/A  Click
25 complement(1727449..1728390)  PHAGE_Clostr_phi24R: lysozyme-peptidase; SSP1659; phage(gi422936721)  9e-06  Click
26 complement(1728524..1728697)  50S ribosomal protein L32; SSP1660  N/A  Click
27 complement(1728778..1729326)  hypothetical protein; SSP1661  N/A  Click
28 1729453..1730586  hypothetical protein; SSP1662  N/A  Click
29 complement(1730968..1731453)  phosphopantetheine adenylyltransferase; SSP1663  N/A  Click
30 complement(1731455..1731997)  putative N6-adenine-specific methylase; SSP1664  N/A  Click
31 1732067..1732456  hypothetical protein; SSP1665  N/A  Click
32 complement(1732567..1732818)  hypothetical protein; SSP1666  N/A  Click
33 1732950..1733873  PHAGE_Parame_1: hypothetical protein; SSP1667; phage(gi9631618)  3e-14  Click
34 complement(1734003..1734437)  hypothetical protein; SSP1668  N/A  Click
35 complement(1734455..1735504)  hypothetical protein; SSP1669  N/A  Click
36 1735694..1736491  excinuclease ABC subunit A; SSP1670  N/A  Click
37 1736446..1737951  excinuclease ABC subunit A; SSP1671  N/A  Click
38 complement(1738048..1738509)  hypothetical protein; SSP1672  N/A  Click
39 complement(1738534..1739445)  protoheme IX farnesyltransferase; SSP1673  N/A  Click
40 1739728..1740636  putative cytochrome aa3 controlling protein; SSP1674  N/A  Click
41 complement(1740715..1744170)  pyruvate carboxylase; SSP1675  N/A  Click
42 complement(1744571..1745806)  putative cell division protein; SSP1676  N/A  Click
43 complement(1746183..1746458)  hypothetical protein; SSP1677  N/A  Click
44 1746793..1747275  hypothetical protein; SSP1678  N/A  Click
45 1747278..1747451  hypothetical protein; SSP1679  N/A  Click
46 complement(1747808..1749655)  PHAGE_Cafete_BV_PW1: putative eIF-2/eIF-5B; SSP1680; phage(gi310831102)  2e-07  Click
47 1749757..1749948  hypothetical protein; SSP1681  N/A  Click
48 complement(1750038..1750862)  inositol monophosphatase family protein; SSP1682  N/A  Click
49 1751126..1751737  hypothetical protein; SSP1683  N/A  Click
50 complement(1751900..1752403)  hypothetical protein; SSP1684  N/A  Click
51 1752618..1753958  manganese transport protein MntH; SSP1685  N/A  Click
52 complement(1754078..1755205)  PHAGE_Human__8: LANA; SSP1686; phage(gi139472804)  3e-15  Click
53 complement(1755279..1756352)  spermidine putrescine-binding periplasmic protein; SSP1687  N/A  Click
54 complement(1756349..1757161)  ABC-type spermidine putrescine transport system permease component II; SSP1688  N/A  Click
55 complement(1757167..1757970)  ABC-type spermidine putrescine transport system permease component I; SSP1689  N/A  Click
56 complement(1757963..1759057)  PHAGE_Plankt_PaV_LD: ABC transporter; SSP1690; phage(gi371496158)  2e-23  Click
57 complement(1759070..1759609)  PHAGE_Thermo_THSA_485A: transcriptional regulator, XRE family; SSP1691; phage(gi397912657)  3e-06  Click
58 complement(1759751..1760029)  hypothetical protein; SSP1692  N/A  Click
59 complement(1760262..1761668)  dihydrolipoamide dehydrogenase; SSP1693  N/A  Click
60 complement(1761672..1762973)  PHAGE_Staphy_StB27: hypothetical protein; SSP1694; phage(gi431809679)  5e-05  Click
61 complement(1763118..1764095)  PHAGE_Synech_S_SM2: transketolase central region-containing protein; SSP1695; phage(gi326781943)  2e-07  Click
62 complement(1764099..1765211)  PHAGE_Synech_S_SM2: transketolase central region-containing protein; SSP1696; phage(gi326781943)  9e-08  Click
63 complement(1765478..1766104)  PHAGE_Clostr_phiCD6356: putative phage tail tape measure protein; SSP1697; phage(gi326536862)  7e-10  Click
64 1773331..1773343  attR    TCCATTTTCCTTT  N/A  Click
Region 2, total : 23 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1991154..1991609)  PHAGE_Bacill_Gamma: fosfomycin resistance protein; SSP1926; phage(gi77020174)  2e-40  Click
2 1991936..1991948  attL    AAAAGATGAAAAC  N/A  Click
3 1992153..1992416  hypothetical protein; SSP1927  N/A  Click
4 complement(1992966..1993358)  PHAGE_Bacill_SPBc2: hypothetical protein SPBc2p016; SSP1928; phage(gi9630141)  2e-09  Click
5 complement(1993753..1994100)  PHAGE_Staphy_PT1028: ORF014; SSP1929; phage(gi66395178)  4e-13  Click
6 complement(1994093..1994419)  hypothetical protein; SSP1930  N/A  Click
7 complement(1994416..1994952)  PHAGE_Staphy_PT1028: ORF010; SSP1931; phage(gi66395174)  2e-36  Click
8 complement(1994970..1995230)  hypothetical protein; SSP1932  N/A  Click
9 complement(1995297..1995803)  PHAGE_Staphy_phiPV83: phi PVL ORF 1 homologue; SSP1933; phage(gi9635714)  1e-23  Click
10 complement(1995809..1996210)  PHAGE_Staphy_PT1028: ORF026; SSP1934; phage(gi66395186)  4e-10  Click
11 complement(1997450..1997542)  hypothetical protein; SSP1935  N/A  Click
12 complement(1997786..1998241)  hypothetical protein; SSP1936  N/A  Click
13 complement(1998254..1998892)  PHAGE_Clostr_phiCD38_2: tail tape measure; SSP1937; phage(gi333798123)  9e-05  Click
14 complement(1998870..1999061)  hypothetical protein; SSP1938  N/A  Click
15 complement(1999074..1999538)  hypothetical protein; SSP1939  N/A  Click
16 complement(2000079..2002421)  PHAGE_Strept_YMC_2011: putative primase; SSP1940; phage(gi399498703)  4e-95  Click
17 complement(2002508..2002816)  hypothetical protein; SSP1941  N/A  Click
18 complement(2002816..2003007)  hypothetical protein; SSP1942  N/A  Click
19 complement(2003017..2003277)  PHAGE_Staphy_2638A: ORF033; SSP1943; phage(gi66395479)  1e-08  Click
20 complement(2003295..2003918)  PHAGE_Pseudo_PAJU2: hypothetical protein PAJU2_gp25; SSP1944; phage(gi209552444)  1e-16  Click
21 complement(2003915..2004136)  PHAGE_Thermo_THSA_485A: helix-turn-helix domain protein; SSP1945; phage(gi397912659)  7e-05  Click
22 2004298..2005122  PHAGE_Staphy_PT1028: ORF006; SSP1946; phage(gi66395170)  6e-15  Click
23 2004864..2004876  attR    AAAAGATGAAAAC  N/A  Click
24 2005132..2006181  PHAGE_Staphy_3: integrase; SSP1947; phage(gi156604018)  4e-73  Click
25 2006782..2007291  PHAGE_Lactob_Lj965: putative superinfection immunity protein; SSP1948; phage(gi41179219)  1e-22  Click