Definition | Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome. |
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Accession | NC_007086 |
Length | 5,148,708 |
Legend
Hits against Virus and prophage DB | |
Hits against Bacterial DB or GenBank file |
Region 1, total : 24 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 2513534..2513545 | attL CGTCGCGCAGCG | N/A | Click |
2 | 2528191..2528790 | PHAGE_Prochl_P_SSM2: NifU-like protein; XC_2103; phage(gi61806099) | 6e-07 | Click |
3 | 2528906..2530597 | PHAGE_Macaci_1: large tegument protein; XC_2104; phage(gi30984464) | 3e-17 | Click |
4 | 2530726..2531376 | PHAGE_Xantho_Cf1c: hypothetical protein Cf1cp5; XC_2105; phage(gi17975752) | 1e-53 | Click |
5 | complement(2531325..2531789) | PHAGE_Stenot_phiSMA9: hypothetical protein phiSMA9p2; XC_2106; phage(gi70727680) | 2e-05 | Click |
6 | 2532075..2533115 | PHAGE_Xantho_Cf1c: Probable site-specific integrase; XC_2107; phage(gi17975748) | 0.0 | Click |
7 | 2533112..2533408 | PHAGE_Xantho_Cf1c: V protein; XC_2108; phage(gi17975750) | 1e-44 | Click |
8 | 2533440..2533571 | minor coat protein; XC_2109 | N/A | Click |
9 | 2533547..2533663 | minor coat protein; XC_2110 | N/A | Click |
10 | 2533691..2533819 | major coat protein; XC_2111 | N/A | Click |
11 | 2533916..2535001 | PHAGE_Stenot_phiSMA9: hypothetical protein phiSMA9p6; XC_2112; phage(gi70727684) | 1e-63 | Click |
12 | 2535012..2535332 | PHAGE_Stenot_phiSMA9: hypothetical protein phiSMA9p5; XC_2113; phage(gi70727683) | 3e-24 | Click |
13 | 2535334..2536656 | PHAGE_Stenot_phiSMA9: putative zonula occludens toxin; XC_2114; phage(gi70727682) | 7e-138 | Click |
14 | complement(2537051..2537389) | PHAGE_Stenot_phiSMA9: hypothetical protein phiSMA9p3; XC_2115; phage(gi70727681) | 3e-17 | Click |
15 | 2537563..2537889 | PHAGE_Stenot_phiSMA9: hypothetical protein phiSMA9p3; XC_2116; phage(gi70727681) | 1e-14 | Click |
16 | complement(2538284..2539606) | PHAGE_Stenot_phiSMA9: putative zonula occludens toxin; XC_2117; phage(gi70727682) | 1e-138 | Click |
17 | complement(2539608..2539928) | PHAGE_Stenot_phiSMA9: hypothetical protein phiSMA9p5; XC_2118; phage(gi70727683) | 8e-25 | Click |
18 | complement(2539939..2540988) | PHAGE_Stenot_phiSMA9: hypothetical protein phiSMA9p6; XC_2119; phage(gi70727684) | 7e-60 | Click |
19 | complement(2541085..2541213) | major coat protein; XC_2120 | N/A | Click |
20 | complement(2541241..2541357) | minor coat protein; XC_2122 | N/A | Click |
21 | complement(2541333..2541464) | minor coat protein; XC_2121 | N/A | Click |
22 | complement(2541496..2541792) | PHAGE_Stenot_phiSHP2: single-stranded DNA binding protein; XC_2123; phage(gi363542403) | 6e-30 | Click |
23 | complement(2541789..2542877) | PHAGE_Stenot_phiSMA9: phage replication protein; XC_2124; phage(gi70727679) | 4e-19 | Click |
24 | complement(2543070..2543429) | hypothetical protein; XC_2126 | N/A | Click |
25 | 2543428..2544018 | PHAGE_Xantho_Cf1c: 18.2K protein; XC_2125; phage(gi17975749) | 6e-71 | Click |
26 | 2556233..2556244 | attR CGTCGCGCAGCG | N/A | Click |
Region 2, total : 21 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 3154681..3154692 | attL TCTCGCGCCCGA | N/A | Click |
2 | 3156052..3157500 | PROPHAGE_Xantho_33913: phage-related integrase; XC_2618; phage(gi21231066) | 0.0 | Click |
3 | 3157526..3158521 | PROPHAGE_Xantho_33913: phage-related integrase; XC_2619; phage(gi21231065) | 0.0 | Click |
4 | complement(3158696..3158974) | hypothetical protein; XC_2620 | N/A | Click |
5 | 3159086..3159241 | PROPHAGE_Xantho_33913: phage-related integrase; XC_2621; phage(gi21231066) | 3e-13 | Click |
6 | 3160159..3161139 | PHAGE_Burkho_KS5: ISBmu23 transposase; XC_2622; phage(gi327198044) | 2e-91 | Click |
7 | complement(3161321..3162373) | PROPHAGE_Xantho_33913: IS1477 transposase; XC_2623; phage(gi77747809) | 3e-161 | Click |
8 | complement(3162187..3162453) | PROPHAGE_Xantho_33913: IS1477 transposase; XC_2624; phage(gi21231080) | 1e-41 | Click |
9 | 3162811..3163080 | PROPHAGE_Xantho_33913: IS1404 transposase; XC_2625; phage(gi21232568) | 3e-46 | Click |
10 | 3162894..3163919 | PROPHAGE_Xantho_33913: IS1404 transposase; XC_2626; phage(gi21232569) | 0.0 | Click |
11 | 3164127..3164237 | hypothetical protein; XC_2627 | N/A | Click |
12 | complement(3164783..3165550) | PROPHAGE_Xantho_33913: ISxcC1 transposase; XC_2628; phage(gi21231060) | 7e-151 | Click |
13 | complement(3165625..3165891) | PROPHAGE_Xantho_33913: ISxcc1 transposase; XC_2629; phage(gi21231059) | 4e-45 | Click |
14 | complement(3166188..3167312) | PHAGE_Pseudo_F8: hypothetical protein ORF066; XC_2630; phage(gi149408380) | 3e-06 | Click |
15 | complement(3167422..3167763) | hypothetical protein; XC_2631 | N/A | Click |
16 | 3167839..3168636 | hypothetical protein; XC_2632 | N/A | Click |
17 | 3168682..3168996 | hypothetical protein; XC_2633 | N/A | Click |
18 | 3169014..3169373 | hypothetical protein; XC_2634 | N/A | Click |
19 | 3169613..3170827 | hypothetical protein; XC_2635 | N/A | Click |
20 | 3171336..3173315 | PHAGE_Salmon_SFP10: recombination endonuclease Gp46; XC_2636; phage(gi351518538) | 4e-06 | Click |
21 | complement(3174078..3175364) | hydroxylase; XC_2637 | N/A | Click |
22 | complement(3175451..3176845) | PROPHAGE_Escher_Sakai: putative integrase; XC_2638; phage(gi15834496) | 2e-22 | Click |
23 | 3186272..3186283 | attR TCTCGCGCCCGA | N/A | Click |
Region 3, total : 10 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | complement(4620497..4621522) | PROPHAGE_Xantho_33913: IS1404 transposase; XC_3914; phage(gi21232569) | 0.0 | Click |
2 | complement(4621336..4621599) | PROPHAGE_Xantho_33913: IS1404 transposase; XC_3915; phage(gi21232568) | 1e-44 | Click |
3 | complement(4622990..4623400) | PHAGE_Burkho_KS14: gp22; XC_3916; phage(gi327198291) | 9e-11 | Click |
4 | complement(4623357..4623938) | PROPHAGE_Xantho_33913: ISxcC1 transposase; XC_3917; phage(gi21231060) | 8e-113 | Click |
5 | complement(4624199..4624465) | PROPHAGE_Xantho_33913: ISxcc1 transposase; XC_3918; phage(gi21231059) | 4e-45 | Click |
6 | complement(4625784..4626602) | PROPHAGE_Xantho_33913: ISxac3 transposase; XC_3920; phage(gi21231086) | 3e-162 | Click |
7 | complement(4626656..4626934) | PROPHAGE_Xantho_33913: ISxac3 transposase; XC_3921; phage(gi21231087) | 5e-46 | Click |
8 | 4627262..4628275 | hypothetical protein; XC_3922 | N/A | Click |
9 | 4628502..4629482 | PROPHAGE_Xantho_33913: IS1479 transposase; XC_3923; phage(gi21229605) | 0.0 | Click |
10 | complement(4629742..4631109) | PROPHAGE_Xantho_33913: IS1478 transposase; XC_3924; phage(gi77747808) | 0.0 | Click |