Definition Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome.
Accession NC_007086
Length 5,148,708
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 24 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2513534..2513545  attL    CGTCGCGCAGCG  N/A  Click
2 2528191..2528790  PHAGE_Prochl_P_SSM2: NifU-like protein; XC_2103; phage(gi61806099)  6e-07  Click
3 2528906..2530597  PHAGE_Macaci_1: large tegument protein; XC_2104; phage(gi30984464)  3e-17  Click
4 2530726..2531376  PHAGE_Xantho_Cf1c: hypothetical protein Cf1cp5; XC_2105; phage(gi17975752)  1e-53  Click
5 complement(2531325..2531789)  PHAGE_Stenot_phiSMA9: hypothetical protein phiSMA9p2; XC_2106; phage(gi70727680)  2e-05  Click
6 2532075..2533115  PHAGE_Xantho_Cf1c: Probable site-specific integrase; XC_2107; phage(gi17975748)  0.0  Click
7 2533112..2533408  PHAGE_Xantho_Cf1c: V protein; XC_2108; phage(gi17975750)  1e-44  Click
8 2533440..2533571  minor coat protein; XC_2109  N/A  Click
9 2533547..2533663  minor coat protein; XC_2110  N/A  Click
10 2533691..2533819  major coat protein; XC_2111  N/A  Click
11 2533916..2535001  PHAGE_Stenot_phiSMA9: hypothetical protein phiSMA9p6; XC_2112; phage(gi70727684)  1e-63  Click
12 2535012..2535332  PHAGE_Stenot_phiSMA9: hypothetical protein phiSMA9p5; XC_2113; phage(gi70727683)  3e-24  Click
13 2535334..2536656  PHAGE_Stenot_phiSMA9: putative zonula occludens toxin; XC_2114; phage(gi70727682)  7e-138  Click
14 complement(2537051..2537389)  PHAGE_Stenot_phiSMA9: hypothetical protein phiSMA9p3; XC_2115; phage(gi70727681)  3e-17  Click
15 2537563..2537889  PHAGE_Stenot_phiSMA9: hypothetical protein phiSMA9p3; XC_2116; phage(gi70727681)  1e-14  Click
16 complement(2538284..2539606)  PHAGE_Stenot_phiSMA9: putative zonula occludens toxin; XC_2117; phage(gi70727682)  1e-138  Click
17 complement(2539608..2539928)  PHAGE_Stenot_phiSMA9: hypothetical protein phiSMA9p5; XC_2118; phage(gi70727683)  8e-25  Click
18 complement(2539939..2540988)  PHAGE_Stenot_phiSMA9: hypothetical protein phiSMA9p6; XC_2119; phage(gi70727684)  7e-60  Click
19 complement(2541085..2541213)  major coat protein; XC_2120  N/A  Click
20 complement(2541241..2541357)  minor coat protein; XC_2122  N/A  Click
21 complement(2541333..2541464)  minor coat protein; XC_2121  N/A  Click
22 complement(2541496..2541792)  PHAGE_Stenot_phiSHP2: single-stranded DNA binding protein; XC_2123; phage(gi363542403)  6e-30  Click
23 complement(2541789..2542877)  PHAGE_Stenot_phiSMA9: phage replication protein; XC_2124; phage(gi70727679)  4e-19  Click
24 complement(2543070..2543429)  hypothetical protein; XC_2126  N/A  Click
25 2543428..2544018  PHAGE_Xantho_Cf1c: 18.2K protein; XC_2125; phage(gi17975749)  6e-71  Click
26 2556233..2556244  attR    CGTCGCGCAGCG  N/A  Click
Region 2, total : 21 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 3154681..3154692  attL    TCTCGCGCCCGA  N/A  Click
2 3156052..3157500  PROPHAGE_Xantho_33913: phage-related integrase; XC_2618; phage(gi21231066)  0.0  Click
3 3157526..3158521  PROPHAGE_Xantho_33913: phage-related integrase; XC_2619; phage(gi21231065)  0.0  Click
4 complement(3158696..3158974)  hypothetical protein; XC_2620  N/A  Click
5 3159086..3159241  PROPHAGE_Xantho_33913: phage-related integrase; XC_2621; phage(gi21231066)  3e-13  Click
6 3160159..3161139  PHAGE_Burkho_KS5: ISBmu23 transposase; XC_2622; phage(gi327198044)  2e-91  Click
7 complement(3161321..3162373)  PROPHAGE_Xantho_33913: IS1477 transposase; XC_2623; phage(gi77747809)  3e-161  Click
8 complement(3162187..3162453)  PROPHAGE_Xantho_33913: IS1477 transposase; XC_2624; phage(gi21231080)  1e-41  Click
9 3162811..3163080  PROPHAGE_Xantho_33913: IS1404 transposase; XC_2625; phage(gi21232568)  3e-46  Click
10 3162894..3163919  PROPHAGE_Xantho_33913: IS1404 transposase; XC_2626; phage(gi21232569)  0.0  Click
11 3164127..3164237  hypothetical protein; XC_2627  N/A  Click
12 complement(3164783..3165550)  PROPHAGE_Xantho_33913: ISxcC1 transposase; XC_2628; phage(gi21231060)  7e-151  Click
13 complement(3165625..3165891)  PROPHAGE_Xantho_33913: ISxcc1 transposase; XC_2629; phage(gi21231059)  4e-45  Click
14 complement(3166188..3167312)  PHAGE_Pseudo_F8: hypothetical protein ORF066; XC_2630; phage(gi149408380)  3e-06  Click
15 complement(3167422..3167763)  hypothetical protein; XC_2631  N/A  Click
16 3167839..3168636  hypothetical protein; XC_2632  N/A  Click
17 3168682..3168996  hypothetical protein; XC_2633  N/A  Click
18 3169014..3169373  hypothetical protein; XC_2634  N/A  Click
19 3169613..3170827  hypothetical protein; XC_2635  N/A  Click
20 3171336..3173315  PHAGE_Salmon_SFP10: recombination endonuclease Gp46; XC_2636; phage(gi351518538)  4e-06  Click
21 complement(3174078..3175364)  hydroxylase; XC_2637  N/A  Click
22 complement(3175451..3176845)  PROPHAGE_Escher_Sakai: putative integrase; XC_2638; phage(gi15834496)  2e-22  Click
23 3186272..3186283  attR    TCTCGCGCCCGA  N/A  Click
Region 3, total : 10 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(4620497..4621522)  PROPHAGE_Xantho_33913: IS1404 transposase; XC_3914; phage(gi21232569)  0.0  Click
2 complement(4621336..4621599)  PROPHAGE_Xantho_33913: IS1404 transposase; XC_3915; phage(gi21232568)  1e-44  Click
3 complement(4622990..4623400)  PHAGE_Burkho_KS14: gp22; XC_3916; phage(gi327198291)  9e-11  Click
4 complement(4623357..4623938)  PROPHAGE_Xantho_33913: ISxcC1 transposase; XC_3917; phage(gi21231060)  8e-113  Click
5 complement(4624199..4624465)  PROPHAGE_Xantho_33913: ISxcc1 transposase; XC_3918; phage(gi21231059)  4e-45  Click
6 complement(4625784..4626602)  PROPHAGE_Xantho_33913: ISxac3 transposase; XC_3920; phage(gi21231086)  3e-162  Click
7 complement(4626656..4626934)  PROPHAGE_Xantho_33913: ISxac3 transposase; XC_3921; phage(gi21231087)  5e-46  Click
8 4627262..4628275  hypothetical protein; XC_3922  N/A  Click
9 4628502..4629482  PROPHAGE_Xantho_33913: IS1479 transposase; XC_3923; phage(gi21229605)  0.0  Click
10 complement(4629742..4631109)  PROPHAGE_Xantho_33913: IS1478 transposase; XC_3924; phage(gi77747808)  0.0  Click