Definition Pseudomonas syringae pv. syringae B728a, complete genome.
Accession NC_007005
Length 6,093,698
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 66 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 3339398..3339410  attL    GCCCCGCGAATCC  N/A  Click
2 complement(3339505..3340470)  PHAGE_Achole_L2: integrase; Psyr_2751; phage(gi9626516)  4e-06  Click
3 3340694..3341158  hypothetical protein; Psyr_2752  N/A  Click
4 complement(3341164..3342147)  zinc-containing alcohol dehydrogenase superfamily protein; Psyr_2753  N/A  Click
5 complement(3342197..3342856)  regulatory protein, TetR; Psyr_2754  N/A  Click
6 3342992..3344071  2-nitropropane dioxygenase, NPD; Psyr_2755  N/A  Click
7 3344173..3344940  molybdenum ABC transporter periplasmic-binding protein; Psyr_2756  N/A  Click
8 3344941..3345621  binding-protein dependent transport system inner membrane protein; Psyr_2757  N/A  Click
9 3345625..3346713  PHAGE_Plankt_PaV_LD: ABC transporter; Psyr_2758; phage(gi371496158)  9e-21  Click
10 3346803..3347873  PHAGE_Acanth_mimivirus: DNA topoisomerase 1b; Psyr_2759; phage(gi311977570)  4e-44  Click
11 3348041..3348126  tRNA  N/A  Click
12 3348313..3348675  hypothetical protein; Psyr_2760  N/A  Click
13 complement(3348722..3350002)  PHAGE_Salmon_vB_SosS_Oslo: error-prone lesion bypass DNA polymerase V; Psyr_2761; phage(gi399528790)  1e-106  Click
14 complement(3349989..3350420)  PHAGE_Cronob_ENT39118: protein umuD; Psyr_2762; phage(gi431811072)  1e-20  Click
15 3350542..3351231  PHAGE_Pseudo_F116: hypothetical protein F116p67; Psyr_2763; phage(gi56692976)  3e-54  Click
16 complement(3351260..3352504)  PHAGE_Pseudo_EL: putative GDSL lipase family protein; Psyr_2764; phage(gi82701090)  6e-14  Click
17 complement(3352501..3352713)  hypothetical protein; Psyr_2765  N/A  Click
18 complement(3352726..3353253)  PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; Psyr_2766; phage(gi16765210)  2e-12  Click
19 complement(3353250..3353783)  PHAGE_Microc_LMM01: chitinase; Psyr_2767; phage(gi117530240)  7e-38  Click
20 complement(3354079..3354447)  tail fiber assembly domain-containing protein; Psyr_2768  N/A  Click
21 complement(3354461..3354775)  PHAGE_Pseudo_DMS3: hypothetical protein DMS3-50; Psyr_2769; phage(gi119953675)  7e-10  Click
22 complement(3354775..3355878)  PHAGE_Entero_HK542: tail fiber; Psyr_2770; phage(gi428783368)  6e-11  Click
23 complement(3355904..3356590)  PHAGE_Pseudo_LIT1: hypothetical protein PP-LIT1_gp54; Psyr_2771; phage(gi282598901)  5e-09  Click
24 complement(3356907..3360491)  PHAGE_Entero_mEp235: central tail fiber; Psyr_2772; phage(gi428781831)  0.0  Click
25 complement(3360547..3361158)  hypothetical protein; Psyr_2773  N/A  Click
26 complement(3361185..3361763)  PHAGE_Entero_mEp235: tail assembly protein; Psyr_2774; phage(gi428781830)  4e-38  Click
27 complement(3361820..3362155)  hypothetical protein; Psyr_2775  N/A  Click
28 3362430..3363095  hypothetical protein; Psyr_2776  N/A  Click
29 complement(3363125..3363889)  PHAGE_Entero_mEp235: minor tail protein K; Psyr_2777; phage(gi428781828)  3e-65  Click
30 complement(3363892..3364641)  PHAGE_Entero_mEp235: minor tail protein L; Psyr_2778; phage(gi428781827)  1e-71  Click
31 complement(3364651..3364989)  PHAGE_Entero_mEp235: minor tail protein M; Psyr_2779; phage(gi428781826)  6e-26  Click
32 complement(3364992..3368477)  PHAGE_Pseudo_MP29: putative tail component protein; Psyr_2780; phage(gi215480016)  0.0  Click
33 complement(3368488..3368736)  PHAGE_Cronob_phiES15: hypothetical protein; Psyr_2781; phage(gi401817604)  8e-09  Click
34 complement(3368799..3369182)  PHAGE_Cronob_phiES15: hypothetical protein; Psyr_2782; phage(gi401817603)  7e-06  Click
35 complement(3369186..3369842)  PHAGE_Cronob_phiES15: putative major tail protein; Psyr_2783; phage(gi401817602)  5e-33  Click
36 complement(3369914..3370324)  PHAGE_Escher_HK639: hypothetical protein; Psyr_2784; phage(gi356870611)  2e-16  Click
37 complement(3370321..3370977)  PHAGE_Shigel_EP23: putative tail protein; Psyr_2785; phage(gi371496282)  7e-19  Click
38 complement(3370974..3371342)  PHAGE_Cyanop_KBS_S_2A: hypothetical protein; Psyr_2786; phage(gi472341510)  3e-13  Click
39 complement(3371674..3372174)  PHAGE_Pseudo_vB_Pae_Kakheti25: virion protein; Psyr_2787; phage(gi388542673)  2e-14  Click
40 complement(3372178..3372627)  hypothetical protein; Psyr_2788  N/A  Click
41 complement(3372652..3373602)  PHAGE_Acinet_Bphi_B1251: major capsid protein; Psyr_2789; phage(gi423262007)  3e-119  Click
42 complement(3373615..3374343)  PHAGE_Xantho_Xp15: putative phage structural protein; Psyr_2790; phage(gi66392059)  5e-21  Click
43 complement(3374427..3374903)  hypothetical protein; Psyr_2791  N/A  Click
44 complement(3374929..3376017)  PHAGE_Salmon_SETP3: head morphogenesis protein; Psyr_2792; phage(gi134288594)  3e-52  Click
45 complement(3375992..3377413)  PHAGE_Burkho_KL1: portal protein; Psyr_2793; phage(gi399528722)  6e-76  Click
46 complement(3377410..3378711)  PHAGE_Pseudo_H105/1: phage terminase large subunit; Psyr_2794; phage(gi327198525)  4e-106  Click
47 complement(3378698..3379159)  PHAGE_Salmon_vB_SosS_Oslo: hypothetical protein; Psyr_2795; phage(gi399528759)  2e-40  Click
48 complement(3379191..3379814)  PHAGE_Cronob_ENT47670: putative transposase; Psyr_2796; phage(gi431810514)  4e-79  Click
49 complement(3379855..3380364)  hypothetical protein; Psyr_2797  N/A  Click
50 complement(3380400..3380849)  PHAGE_Pseudo_KPP10: hypothetical protein; Psyr_2798; phage(gi327198153)  9e-19  Click
51 3380980..3381249  hypothetical protein; Psyr_2799  N/A  Click
52 complement(3381323..3381553)  PHAGE_Cronob_vB_CsaM_GAP32: hypothetical protein; Psyr_2800; phage(gi414087356)  2e-16  Click
53 3381700..3382149  hypothetical protein; Psyr_2801  N/A  Click
54 complement(3382185..3382523)  PHAGE_Erwini_PEp14: hypothetical protein; Psyr_2802; phage(gi374531878)  2e-06  Click
55 complement(3382523..3382894)  PHAGE_Erwini_PEp14: holin; Psyr_2803; phage(gi374531877)  2e-07  Click
56 3383064..3383420  hypothetical protein; Psyr_2804  N/A  Click
57 complement(3383546..3384127)  PHAGE_Pseudo_phi297: hypothetical protein; Psyr_2805; phage(gi374531281)  1e-05  Click
58 complement(3384124..3384708)  PHAGE_Pseudo_PAJU2: putative NinG; Psyr_2806; phage(gi209552490)  2e-66  Click
59 complement(3384708..3385106)  PHAGE_Cronob_ENT47670: putative ninB protein; Psyr_2807; phage(gi431810524)  1e-26  Click
60 complement(3385197..3385478)  hypothetical protein; Psyr_2808  N/A  Click
61 complement(3385475..3386272)  PHAGE_Pseudo_F116: hypothetical protein F116p33; Psyr_2809; phage(gi56692949)  5e-43  Click
62 complement(3386259..3387236)  PHAGE_Pseudo_F116: hypothetical protein F116p32; Psyr_2810; phage(gi56692948)  2e-38  Click
63 complement(3387270..3387692)  PHAGE_Burkho_Bcep176: gp14; Psyr_2811; phage(gi77864639)  5e-05  Click
64 3388088..3388738  PHAGE_Entero_mEp235: prophage repressor; Psyr_2812; phage(gi428781850)  2e-42  Click
65 3388751..3389023  hypothetical protein; Psyr_2813  N/A  Click
66 3389046..3389366  hypothetical protein; Psyr_2814  N/A  Click
67 complement(3389670..3390704)  hypothetical protein; Psyr_2815  N/A  Click
68 3391512..3391524  attR    GCCCCGCGAATCC  N/A  Click
69 3391672..3392451  PHAGE_Burkho_phiE125: hypothetical protein phiE125p43; Psyr_2816; phage(gi17975204)  3e-12  Click
Region 2, total : 35 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 5433351..5433362  attL    CTTGAAGCTTGC  N/A  Click
2 complement(5444061..5444558)  PHAGE_Burkho_DC1: Rz; Psyr_4582; phage(gi401723083)  5e-08  Click
3 complement(5444570..5445115)  PHAGE_Cronob_vB_CsaM_GAP31: lysozyme; Psyr_4583; phage(gi414086784)  4e-51  Click
4 complement(5445230..5445796)  PHAGE_Gifsy_1: bacteriophage side tail fiber assembly factor & structural component; Lambda gpTfa homolog; Psyr_4584; phage(gi169257212)  2e-14  Click
5 complement(5445804..5447126)  PHAGE_Burkho_KS14: gp18; Psyr_4585; phage(gi327198287)  2e-19  Click
6 complement(5447275..5447874)  PHAGE_Entero_SfV: tail protein; Psyr_4586; phage(gi19548988)  8e-15  Click
7 complement(5447862..5448902)  PHAGE_Entero_SfV: tail protein; Psyr_4587; phage(gi19549009)  1e-60  Click
8 complement(5448892..5449290)  PHAGE_Entero_SfV: tail protein; Psyr_4588; phage(gi19549008)  9e-24  Click
9 complement(5449287..5449799)  PHAGE_Entero_SfV: tail protein; Psyr_4589; phage(gi19549007)  2e-22  Click
10 complement(5449796..5450923)  PHAGE_Entero_SfV: tail protein; Psyr_4590; phage(gi19549006)  5e-67  Click
11 complement(5450927..5452339)  PHAGE_Entero_SfV: tail/DNA circulation protein; Psyr_4591; phage(gi19549005)  4e-45  Click
12 complement(5452336..5454495)  PHAGE_Entero_SfV: tail protein; Psyr_4592; phage(gi19549004)  7e-40  Click
13 complement(5454626..5454922)  PHAGE_Entero_SfV: hypothetical protein SfVp13; Psyr_4593; phage(gi19549003)  2e-14  Click
14 complement(5454919..5455266)  PHAGE_Entero_SfV: hypothetical protein SfVp12; Psyr_4594; phage(gi19549002)  3e-18  Click
15 complement(5455327..5456823)  PHAGE_Entero_SfV: tail sheath protein; Psyr_4595; phage(gi19549001)  5e-148  Click
16 complement(5456842..5457030)  PHAGE_Entero_SfV: hypothetical protein SfVp10; Psyr_4596; phage(gi19549000)  1e-07  Click
17 complement(5457027..5457617)  PHAGE_Entero_SfV: hypothetical protein SfVp09; Psyr_4597; phage(gi19548999)  1e-19  Click
18 complement(5457663..5458001)  PHAGE_Erwini_PEp14: hypothetical protein; Psyr_4598; phage(gi374531878)  5e-06  Click
19 complement(5457982..5458371)  PHAGE_Erwini_PEp14: holin; Psyr_4599; phage(gi374531877)  3e-07  Click
20 complement(5458494..5459666)  glycoside hydrolase family protein; Psyr_4600  N/A  Click
21 complement(5459678..5459863)  PHAGE_Pseudo_B3: Com translational regulator; Psyr_4601; phage(gi56692616)  2e-10  Click
22 complement(5460136..5460579)  hypothetical protein; Psyr_4602  N/A  Click
23 5460691..5461380  PHAGE_Entero_ST64T: C2; Psyr_4603; phage(gi24371557)  1e-52  Click
24 5461535..5461783  hypothetical protein; Psyr_4604  N/A  Click
25 5461881..5462147  transcriptional regulator PrtN, putative; Psyr_4605  N/A  Click
26 5462253..5464175  Outer membrane autotransporter barrel; Psyr_4606  N/A  Click
27 5465113..5465412  PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; Psyr_4607; phage(gi24373865)  4e-09  Click
28 5465472..5466254  PHAGE_Entero_Sf6: putative transposase OrfB; Psyr_4608; phage(gi41057343)  5e-70  Click
29 complement(5466494..5467975)  anthranilate synthase component I; Psyr_4609  N/A  Click
30 complement(5468046..5468864)  phosphoglycolate phosphatase; Psyr_4610  N/A  Click
31 complement(5468861..5469535)  ribulose-phosphate 3-epimerase; Psyr_4611  N/A  Click
32 5469687..5469698  attR    CTTGAAGCTTGC  N/A  Click
33 complement(5469722..5470543)  binding-protein dependent transport system inner membrane protein; Psyr_4612  N/A  Click
34 complement(5470555..5471802)  binding-protein dependent transport system inner membrane protein; Psyr_4613  N/A  Click
35 5471810..5471821  attL    TCCGGAATCTTT  N/A  Click
36 complement(5471880..5472914)  extracellular solute-binding protein; Psyr_4614  N/A  Click
37 complement(5472997..5474121)  PHAGE_Plankt_PaV_LD: ABC transporter; Psyr_4615; phage(gi371496158)  5e-27  Click
38 complement(5474547..5475383)  PROPHAGE_Escher_MG1655: IS150 transposase B; Psyr_4616; phage(gi16131429)  1e-95  Click
39 5482490..5482501  attR    TCCGGAATCTTT  N/A  Click
Region 3, total : 11 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 5500196..5502151  PHAGE_Helico_phiHP33: DNA primase; Psyr_4640; phage(gi371671350)  3e-42  Click
2 5502219..5504069  PHAGE_Synech_S_CBS1: group2 RNA polymerase sigma factor; Psyr_4641; phage(gi356870821)  3e-38  Click
3 5504338..5506824  PHAGE_Pseudo_YuA: hypothetical protein; Psyr_4642; phage(gi162135126)  2e-07  Click
4 5506840..5506916  tRNA  N/A  Click
5 5506883..5506897  attL    TTGGTCCACGGTTCG  N/A  Click
6 5507043..5508014  PHAGE_Lactob_1: putative tail fibre protein; Psyr_4643; phage(gi226377752)  3e-05  Click
7 complement(5508664..5509014)  plasmid stabilization system protein; Psyr_4644  N/A  Click
8 complement(5509027..5509275)  prevent-host-death protein; Psyr_4645  N/A  Click
9 5509622..5510575  PHAGE_Mycoba_Porky: gp51; Psyr_4646; phage(gi194303347)  1e-08  Click
10 complement(5510601..5510921)  hypothetical protein; Psyr_4647  N/A  Click
11 complement(5510988..5511227)  hypothetical protein; Psyr_4648  N/A  Click
12 complement(5511307..5511816)  PHAGE_Pseudo_OBP: putative acetyl transferase; Psyr_4649; phage(gi371671609)  1e-04  Click
13 5513236..5515167  PHAGE_Pectob_My1: YadA domain-containing protein; Psyr_4651; phage(gi410491156)  1e-10  Click
14 5521130..5521144  attR    TTGGTCCACGGTTCG  N/A  Click