Definition Xanthomonas oryzae pv. oryzae KACC10331 chromosome, complete genome.
Accession NC_006834
Length 4,941,439
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 8 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(311035..311511)  PROPHAGE_Xantho_33913: IS1404 transposase; XOO0295; phage(gi21232569)  2e-78  Click
2 complement(312186..312545)  PROPHAGE_Xantho_33913: IS1595 transposase; XOO0297; phage(gi21231554)  1e-26  Click
3 complement(312577..312837)  PROPHAGE_Mesorh_MAFF303099: transposase; XOO0298; phage(gi13475318)  9e-13  Click
4 312883..313833  PHAGE_Bacill_SP10: formamidopyrimidine-DNA glycosylase; XOO0299; phage(gi418489574)  2e-20  Click
5 complement(314180..315232)  PROPHAGE_Xantho_33913: IS1595 transposase; XOO0300; phage(gi21231554)  2e-144  Click
6 315241..315666  PROPHAGE_Brucel_1330: IS5 family transposase orfA; XOO0301; phage(gi23501422)  4e-10  Click
7 316058..317521  PROPHAGE_Xantho_33913: IS1478 transposase; XOO0303; phage(gi77747808)  3e-173  Click
8 complement(317814..318872)  PHAGE_Burkho_BcepMigl: virion associated protein; XOO0305; phage(gi431809925)  2e-05  Click
Region 2, total : 22 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 621225..621237  attL    CAGGCGGGCGCGG  N/A  Click
2 625987..627189  PHAGE_Pseudo_PAJU2: putative integrase; XOO0599; phage(gi209552450)  4e-39  Click
3 627664..628515  PHAGE_Salmon_ST64B: putative replication protein; XOO0600; phage(gi23505486)  1e-09  Click
4 628998..629567  putative transposase; XOO0601  N/A  Click
5 629533..630009  PROPHAGE_Xantho_33913: IS1480 transposase; XOO0602; phage(gi21231089)  2e-75  Click
6 630006..630719  TraF protein; XOO0603  N/A  Click
7 630733..631212  hypothetical protein; XOO0604  N/A  Click
8 631323..631469  plasmid-related lipoprotein; XOO4720  N/A  Click
9 631471..632556  TraH protein; XOO0605  N/A  Click
10 632862..633020  hypothetical protein; XOO4721  N/A  Click
11 633730..633741  attL    CGGCCGGATTGC  N/A  Click
12 634333..634743  PHAGE_Burkho_AH2: Vsr endonuclease; XOO0606; phage(gi399529071)  2e-36  Click
13 634770..636098  PHAGE_Thermu_26: C5 cytosine-specific DNA methylase; XOO0607; phage(gi157265426)  6e-32  Click
14 636095..636892  endonuclease; XOO0608  N/A  Click
15 637016..637082  tRNA  N/A  Click
16 complement(637152..638426)  PHAGE_Salmon_ST64B: Integrase protein; XOO0609; phage(gi23505472)  4e-13  Click
17 complement(638560..638766)  hypothetical protein; XOO0610  N/A  Click
18 complement(638763..639035)  hypothetical protein; XOO0611  N/A  Click
19 complement(639274..639396)  hypothetical protein; XOO0612  N/A  Click
20 complement(639421..639549)  hypothetical protein; XOO0613  N/A  Click
21 639754..639858  PROPHAGE_Xantho_33913: IS1404 transposase; XOO0614; phage(gi21232568)  3e-05  Click
22 complement(641213..642448)  PHAGE_Ralsto_phiRSA1: transposase IRSO15-like; XOO0618; phage(gi145708108)  2e-23  Click
23 complement(643229..644245)  PROPHAGE_Xantho_33913: IS1595 transposase; XOO0620; phage(gi21231554)  1e-99  Click
24 complement(644416..644865)  PHAGE_Staphy_phiPV83: transposase; XOO0621; phage(gi9635740)  1e-12  Click
25 644900..645202  PROPHAGE_Xantho_33913: IS1404 transposase; XOO0622; phage(gi21232569)  5e-24  Click
26 646059..646070  attR    CGGCCGGATTGC  N/A  Click
27 658031..658043  attR    CAGGCGGGCGCGG  N/A  Click
Region 3, total : 27 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1028697..1029650  PROPHAGE_Xantho_33913: IS1595 transposase; XOO1003; phage(gi21231554)  6e-95  Click
2 1029952..1031529  hypothetical protein; XOO1004  N/A  Click
3 complement(1031941..1032387)  PROPHAGE_Brucel_1330: IS5 family transposase orfA; XOO1006; phage(gi23501422)  4e-10  Click
4 1032418..1033416  PROPHAGE_Xantho_33913: IS1481 transposase; XOO1007; phage(gi21229606)  1e-122  Click
5 1033417..1033650  PROPHAGE_Xantho_33913: IS1481 transposase; XOO1008; phage(gi21229606)  2e-34  Click
6 1033655..1034896  PROPHAGE_Mesorh_MAFF303099: transposase; XOO1009; phage(gi13475318)  8e-79  Click
7 complement(1035040..1035192)  PHAGE_Burkho_KS5: ISBmu23 transposase; XOO1011; phage(gi327198044)  1e-09  Click
8 complement(1036273..1036776)  PHAGE_Pectob_phiTE: SleB; XOO1014; phage(gi448244775)  3e-10  Click
9 complement(1037283..1037525)  glycerophosphodiester phosphodiesterase; XOO1015  N/A  Click
10 complement(1037519..1037848)  PROPHAGE_Brucel_1330: IS5 family transposase orfB; XOO1016; phage(gi23501423)  1e-08  Click
11 complement(1037864..1038310)  PROPHAGE_Brucel_1330: IS5 family transposase orfA; XOO1017; phage(gi23501422)  4e-10  Click
12 complement(1038316..1039053)  PHAGE_Staphy_JD007: glycerophosphoryl diester phosphodiesterase; XOO1018; phage(gi428783010)  3e-09  Click
13 1040016..1040897  PROPHAGE_Mesorh_MAFF303099: transposase; XOO1020; phage(gi13475318)  2e-76  Click
14 1040867..1041223  PROPHAGE_Shewan_MR-1: ISSod6, transposase; XOO1021; phage(gi24374783)  7e-05  Click
15 1041189..1041620  PROPHAGE_Xantho_33913: IS1480 transposase; XOO1022; phage(gi21231089)  1e-66  Click
16 complement(1041621..1042637)  PROPHAGE_Xantho_33913: IS1595 transposase; XOO1023; phage(gi21231554)  1e-99  Click
17 1042850..1043857  isocitrate dehydrogenase; XOO1024  N/A  Click
18 complement(1044001..1044762)  hypothetical protein; XOO1025  N/A  Click
19 1044914..1044990  tRNA  N/A  Click
20 1045033..1045109  tRNA  N/A  Click
21 1045142..1045218  tRNA  N/A  Click
22 1045312..1045387  tRNA  N/A  Click
23 1045635..1045898  PROPHAGE_Xantho_33913: IS1404 transposase; XOO4738; phage(gi21232568)  7e-40  Click
24 1046193..1046426  PROPHAGE_Xantho_33913: IS1404 transposase; XOO1028; phage(gi21232569)  2e-19  Click
25 1046396..1046740  PROPHAGE_Xantho_33913: IS1404 transposase; XOO1029; phage(gi21232569)  2e-57  Click
26 1046884..1047093  PROPHAGE_Escher_CFT073: transposase/IS protein; XOO1030; phage(gi26248359)  4e-05  Click
27 1047164..1047472  PROPHAGE_Xantho_33913: IS1478 transposase; XOO1031; phage(gi77747808)  5e-35  Click
28 1047796..1047880  tRNA  N/A  Click
29 1047894..1049375  trigger factor; XOO1032  N/A  Click
30 1049468..1050094  PHAGE_Entero_mEp213: head maturation protease; XOO1033; phage(gi428782594)  4e-11  Click
31 1050219..1051505  PROPHAGE_Escher_Sakai: ATP-dependent protease ATP-binding subunit HslU; XOO1034; phage(gi15834112)  6e-19  Click
32 1051568..1054120  PHAGE_Megavi_chiliensis: lon protease-like protein; XOO1035; phage(gi363540712)  3e-62  Click
Region 4, total : 33 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1745494..1748190)  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp40; XOO1685; phage(gi17313257)  0.0  Click
2 complement(1748200..1748412)  hypothetical protein; XOO1686  N/A  Click
3 complement(1748698..1749024)  PHAGE_Burkho_phi52237: putative phage transcriptional activator Ogr/Delta; XOO1687; phage(gi72537689)  2e-06  Click
4 1749350..1749787  PHAGE_Burkho_phi52237: helix-turn-helix domain protein; XOO1688; phage(gi72537692)  3e-11  Click
5 complement(1750448..1751434)  PHAGE_Burkho_phi52237: bacteriophage late control gene D protein; XOO1689; phage(gi72537694)  4e-92  Click
6 complement(1751431..1751832)  PHAGE_Burkho_phi52237: fels-2 prophage protein; XOO1690; phage(gi72537695)  8e-34  Click
7 complement(1751845..1754715)  PHAGE_Salmon_ST64B: tail protein; XOO1691; phage(gi23505460)  2e-105  Click
8 complement(1754748..1754861)  PHAGE_Yersin_413C: gpE+E'; XOO1692; phage(gi30065728)  2e-07  Click
9 complement(1754870..1755172)  PHAGE_Ralsto_phiRSA1: bacteriophage gpE; XOO1693; phage(gi145708103)  1e-27  Click
10 complement(1755218..1755727)  PHAGE_Burkho_phi52237: phage major tail tube protein; XOO1694; phage(gi72537698)  6e-53  Click
11 complement(1755758..1756924)  PHAGE_Erwini_ENT90: tail sheath protein; XOO1695; phage(gi431810939)  1e-128  Click
12 complement(1756936..1757295)  PHAGE_Pseudo_phiCTX: predicted baseplate; XOO1696; phage(gi17313236)  2e-22  Click
13 complement(1757292..1757855)  PHAGE_Pseudo_phiCTX: predicted baseplate; XOO1697; phage(gi17313235)  3e-37  Click
14 complement(1757916..1758290)  hypothetical protein; XOO4779  N/A  Click
15 complement(1758502..1760007)  PHAGE_Burkho_phi52237: bacteriophage protein; XOO1698; phage(gi72537701)  2e-37  Click
16 complement(1760017..1760586)  PHAGE_Burkho_phi52237: phage tail protein I; XOO1699; phage(gi72537702)  3e-41  Click
17 complement(1760555..1761508)  PHAGE_Burkho_phi52237: bacteriophage baseplate assembly protein J; XOO1700; phage(gi72537703)  2e-68  Click
18 complement(1761576..1762418)  hypothetical protein; XOO1701  N/A  Click
19 complement(1763236..1763682)  PHAGE_Burkho_phi52237: phage tail completion protein; XOO1702; phage(gi72537708)  7e-37  Click
20 complement(1763670..1764122)  PHAGE_Pseudo_phiCTX: predicted tail completion; XOO1703; phage(gi17313232)  7e-35  Click
21 complement(1764086..1764574)  PHAGE_Burkho_KS5: gp32; XOO1704; phage(gi327198030)  1e-34  Click
22 complement(1764574..1765215)  PHAGE_Cronob_ENT47670: putative endolysin; XOO1705; phage(gi431810515)  6e-35  Click
23 complement(1765212..1765502)  PHAGE_Burkho_phi52237: putative bacteriophage membrane protein; XOO1706; phage(gi72537712)  7e-13  Click
24 complement(1765480..1765836)  PHAGE_Burkho_phi52237: putative bacteriophage membrane protein; XOO1707; phage(gi72537713)  3e-23  Click
25 complement(1765841..1766050)  PHAGE_Burkho_phi52237: putative bacteriophage tail protein X; XOO1708; phage(gi117676338)  4e-16  Click
26 complement(1766050..1766427)  PHAGE_Pseudo_phiCTX: predicted capsid completion protein; XOO1709; phage(gi17313224)  4e-31  Click
27 complement(1766617..1767336)  PHAGE_Pseudo_phiCTX: predicted terminase subunit; XOO1710; phage(gi17313223)  3e-74  Click
28 complement(1767340..1768356)  PHAGE_Burkho_phi52237: P2 family phage major capsid protein; XOO1712; phage(gi72537718)  2e-115  Click
29 complement(1768403..1769245)  PHAGE_Pseudo_phiCTX: presumed capsid scaffold; XOO1713; phage(gi17313221)  4e-70  Click
30 1769367..1771151  PHAGE_Burkho_phi52237: phage terminase ATPase subunit; XOO1714; phage(gi72537721)  0.0  Click
31 1771148..1772173  PHAGE_Burkho_phi52237: pbsx family phage portal protein; XOO1715; phage(gi72537722)  3e-117  Click
32 1772362..1773063  PHAGE_Burkho_phi52237: DNA methylase; XOO1717; phage(gi72537706)  6e-50  Click
33 complement(1774916..1775473)  PHAGE_Ralsto_phiRSA1: hypothetical protein RPRSA1_gp02; XOO1718; phage(gi145708076)  5e-11  Click
Region 5, total : 40 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2175370..2175381  attL    CCGGCGCCAGGC  N/A  Click
2 complement(2187884..2188360)  PROPHAGE_Xantho_33913: IS1480 transposase; XOO2081; phage(gi21231089)  8e-75  Click
3 complement(2188326..2188697)  PROPHAGE_Shewan_MR-1: ISSod6, transposase; XOO2082; phage(gi24374783)  7e-05  Click
4 2189085..2189420  hypothetical protein; XOO2083  N/A  Click
5 2189753..2190520  tRNA/rRNA methyltransferase; XOO2084  N/A  Click
6 2191028..2191996  PROPHAGE_Xantho_33913: IS1479 transposase; XOO2085; phage(gi21229605)  1e-172  Click
7 complement(2192204..2193337)  PROPHAGE_Mesorh_MAFF303099: transposase; XOO2086; phage(gi13475318)  1e-60  Click
8 complement(2193350..2193811)  PROPHAGE_Xantho_33913: IS1595 transposase; XOO2087; phage(gi21231554)  5e-33  Click
9 complement(2193789..2194367)  PROPHAGE_Xantho_33913: IS1595 transposase; XOO2088; phage(gi21231554)  6e-52  Click
10 complement(2194399..2194638)  PROPHAGE_Mesorh_MAFF303099: transposase; XOO2089; phage(gi13475318)  2e-12  Click
11 complement(2196001..2197476)  PROPHAGE_Xantho_33913: IS1478 transposase; XOO2092; phage(gi77747808)  2e-123  Click
12 complement(2197798..2197980)  integral membrane protein; XOO4797  N/A  Click
13 complement(2198129..2199328)  homoserine O-acetyltransferase; XOO2093  N/A  Click
14 2199460..2200137  PROPHAGE_Mesorh_MAFF303099: transposase; XOO2094; phage(gi13475318)  2e-65  Click
15 2200189..2201157  PROPHAGE_Xantho_33913: IS1479 transposase; XOO2095; phage(gi21229605)  2e-173  Click
16 2201349..2202317  PROPHAGE_Xantho_33913: IS1479 transposase; XOO2096; phage(gi21229605)  2e-173  Click
17 2202428..2202610  PROPHAGE_Mesorh_MAFF303099: transposase; XOO2097; phage(gi13475318)  1e-05  Click
18 complement(2202597..2203073)  PROPHAGE_Xantho_33913: IS1480 transposase; XOO2098; phage(gi21231089)  2e-75  Click
19 complement(2203039..2203458)  PROPHAGE_Shewan_MR-1: ISSod6, transposase; XOO2099; phage(gi24374783)  8e-05  Click
20 2203466..2203573  putative ISXo8 transposase; XOO4798  N/A  Click
21 2203570..2204586  PROPHAGE_Xantho_33913: IS1595 transposase; XOO2100; phage(gi21231554)  2e-100  Click
22 2204580..2204711  putative ISXo8 transposase; XOO2101  N/A  Click
23 2204852..2205148  putative ISXo8 transposase; XOO2102  N/A  Click
24 2205308..2205778  PROPHAGE_Xantho_33913: IS1481 transposase; XOO2104; phage(gi21229606)  9e-76  Click
25 2205779..2206012  PROPHAGE_Xantho_33913: IS1481 transposase; XOO2105; phage(gi21229606)  2e-34  Click
26 complement(2206113..2206661)  putative ISXo8 transposase; XOO2106  N/A  Click
27 complement(2206816..2207832)  PROPHAGE_Xantho_33913: IS1595 transposase; XOO2107; phage(gi21231554)  7e-99  Click
28 complement(2207888..2208925)  putative transposase; XOO2108  N/A  Click
29 2209007..2209270  PROPHAGE_Shewan_MR-1: ISSod6, transposase; XOO2109; phage(gi24374783)  7e-05  Click
30 2209242..2209724  PROPHAGE_Xantho_33913: IS1480 transposase; XOO2110; phage(gi21231089)  7e-73  Click
31 complement(2209699..2210562)  PROPHAGE_Mesorh_MAFF303099: transposase; XOO2111; phage(gi13475318)  2e-77  Click
32 2210531..2210917  PROPHAGE_Xantho_33913: IS1478 transposase; XOO2112; phage(gi77747808)  7e-48  Click
33 complement(2210914..2211900)  PROPHAGE_Xantho_33913: IS1404 transposase; XOO2113; phage(gi21232569)  3e-160  Click
34 complement(2211753..2212016)  PROPHAGE_Xantho_33913: IS1404 transposase; XOO4799; phage(gi21232568)  5e-39  Click
35 complement(2212203..2212901)  TonB-like protein; XOO2114  N/A  Click
36 complement(2213031..2213795)  PHAGE_Human__2: transcriptional regulator ICP4; XOO2115; phage(gi9629344)  3e-07  Click
37 2213802..2215151  seryl-tRNA synthetase; XOO2116  N/A  Click
38 complement(2215301..2215777)  PROPHAGE_Xantho_33913: IS1480 transposase; XOO2117; phage(gi21231089)  2e-75  Click
39 complement(2215743..2216285)  putative transposase; XOO2118  N/A  Click
40 complement(2218068..2219036)  PROPHAGE_Xantho_33913: IS1479 transposase; XOO2122; phage(gi21229605)  1e-172  Click
41 complement(2219100..2219684)  acyl carrier protein phosphodiesterase; XOO2123  N/A  Click
42 2219784..2220797  PHAGE_Burkho_phi1026b: gp58; XOO2124; phage(gi38707948)  3e-08  Click
43 2221174..2221263  tRNA  N/A  Click
44 2221772..2221783  attR    CCGGCGCCAGGC  N/A  Click
45 2221800..2221976  integrase; XOO2126  N/A  Click
Region 6, total : 7 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(2529999..2538197)  PHAGE_Cronob_vB_CsaM_GAP32: long tail fiber proximal subunit; XOO2380; phage(gi414087138)  3e-57  Click
2 2538239..2539639  PROPHAGE_Mesorh_MAFF303099: transposase; XOO2381; phage(gi13475318)  3e-79  Click
3 complement(2539852..2540820)  PHAGE_Burkho_KS5: ISBmu23 transposase; XOO2382; phage(gi327198044)  7e-91  Click
4 2541397..2542410  hypothetical protein; XOO2383  N/A  Click
5 2542522..2542650  PROPHAGE_Xantho_33913: IS1595 transposase; XOO2384; phage(gi21231554)  6e-15  Click
6 2542699..2542962  PROPHAGE_Xantho_33913: IS1404 transposase; XOO4828; phage(gi21232568)  7e-40  Click
7 2542815..2543651  PROPHAGE_Xantho_33913: IS1478 transposase; XOO2385; phage(gi77747808)  4e-92  Click
Region 7, total : 10 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2780864..2781619  PHAGE_Bacill_BCP78: putative RNA polymerase sigma 28 subunit SigG; XOO2621; phage(gi410492878)  1e-11  Click
2 2781654..2782046  PHAGE_Ectoca_1: EsV-1-65; XOO2622; phage(gi13242537)  8e-09  Click
3 2782046..2782672  chemotaxis related protein; XOO2623  N/A  Click
4 2782675..2784333  chemotaxis related protein; XOO2624  N/A  Click
5 2784473..2784733  PROPHAGE_Xantho_33913: IS1478 transposase; XOO2625; phage(gi77747808)  3e-16  Click
6 2784737..2785186  PHAGE_Staphy_phiPV83: transposase; XOO2626; phage(gi9635740)  6e-12  Click
7 2785217..2785759  PHAGE_Spirop_R8A2B: putative transposase; XOO2627; phage(gi9626114)  6e-08  Click
8 2786645..2788027  PROPHAGE_Mesorh_MAFF303099: transposase; XOO2628; phage(gi13475318)  1e-79  Click
9 2788177..2788665  PROPHAGE_Xantho_33913: IS1479 transposase; XOO2629; phage(gi21229605)  2e-77  Click
10 complement(2789820..2795060)  PHAGE_Acinet_Ac42: gp27 baseplate hub subunit; XOO2631; phage(gi311992689)  6e-07  Click
Region 8, total : 7 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 4012231..4012602  PROPHAGE_Shewan_MR-1: ISSod6, transposase; XOO3760; phage(gi24374783)  7e-05  Click
2 4012568..4013044  PROPHAGE_Xantho_33913: IS1480 transposase; XOO3761; phage(gi21231089)  5e-74  Click
3 complement(4013348..4014679)  PHAGE_Ectoca_1: EsV-1-65; XOO3762; phage(gi13242537)  3e-12  Click
4 complement(4014766..4015389)  PHAGE_Ectoca_1: EsV-1-65; XOO3763; phage(gi13242537)  4e-05  Click
5 complement(4015572..4016240)  acyl-CoA thioesterase I; XOO3764  N/A  Click
6 4016350..4016949  PHAGE_Plankt_PaV_LD: ABC transporter; XOO3765; phage(gi371496158)  5e-29  Click
7 4016946..4019429  PHAGE_Lactob_Lj771: minor tail protein gp26-like protein; XOO3766; phage(gi163932195)  2e-05  Click
Region 9, total : 10 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(4771430..4774426)  PHAGE_Equid_8: envelope glycoprotein J; XOO4475; phage(gi386522795)  3e-23  Click
2 4774434..4774553  hypothetical protein; YXOOp17  N/A  Click
3 4775731..4776258  PHAGE_Cyanop_KBS_S_2A: hypothetical protein; XOO4476; phage(gi472341458)  1e-05  Click
4 4776317..4776853  PHAGE_Cyanop_KBS_S_2A: hypothetical protein; XOO4478; phage(gi472341458)  1e-07  Click
5 4776881..4777906  PROPHAGE_Xantho_33913: IS1595 transposase; XOO4479; phage(gi21231554)  3e-99  Click
6 4777919..4778194  putative transposase; XOO4480  N/A  Click
7 complement(4778189..4778929)  PHAGE_Parame_1: Cu/Zn superoxide dismutase; XOO4481; phage(gi9631813)  3e-20  Click
8 complement(4778892..4779497)  PHAGE_Parame_1: Cu/Zn superoxide dismutase; XOO4482; phage(gi9631813)  3e-19  Click
9 complement(4779993..4781441)  two-component system regulatory protein; XOO4483  N/A  Click
10 complement(4781413..4782468)  PHAGE_Ectoca_1: EsV-1-65; XOO4484; phage(gi13242537)  2e-05  Click