Definition Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 chromosome, complete genome.
Accession NC_006511
Length 4,585,229
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 9 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1918440..1918453  attL    TGAGCTGGCGGAAA  N/A  Click
2 1925530..1925907  PROPHAGE_Escher_CFT073: P4 family integrase; SPA1851; phage(gi26248244)  8e-49  Click
3 1926069..1926266  hypothetical protein; SPA1852  N/A  Click
4 complement(1928696..1930972)  PROPHAGE_Escher_EDL933: ATP-dependent Clp protease ATP-binding subunit; SPA1854; phage(gi15800640)  0.0  Click
5 complement(1931003..1931323)  PHAGE_Cronob_vB_CsaM_GAP32: ATP-dependent Clp protease; SPA1855; phage(gi414087232)  3e-05  Click
6 1931647..1931868  PHAGE_Lactoc_bIL312: Csp; SPA1856; phage(gi13095918)  5e-14  Click
7 complement(1931998..1933944)  PHAGE_Plankt_PaV_LD: ABC transporter; SPA1857; phage(gi371496158)  5e-41  Click
8 complement(1933941..1935059)  PHAGE_Cronob_ENT47670: putative tail protein; SPA1858; phage(gi431810494)  7e-05  Click
9 1935205..1936155  virK protein; SPA1859  N/A  Click
10 complement(1936152..1937810)  PHAGE_Entero_P2: Old; SPA1860; phage(gi9630369)  8e-06  Click
11 1949729..1949742  attR    TGAGCTGGCGGAAA  N/A  Click
Region 2, total : 36 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2500457..2500468  attL    TTTGTCGCCGCG  N/A  Click
2 complement(2507316..2507837)  PHAGE_Salmon_SPN3UB: KilA-N domain protein; SPA2395; phage(gi423262448)  2e-102  Click
3 complement(2508050..2508499)  PHAGE_Salmon_vB_SosS_Oslo: endopeptidase; SPA2396; phage(gi399528835)  2e-64  Click
4 complement(2508517..2508954)  PHAGE_Entero_ES18: gp76; SPA2397; phage(gi62362289)  5e-76  Click
5 complement(2508938..2509264)  PHAGE_Entero_P22: inhibitor of gene 13' protein holin; SPA2398; phage(gi9635530)  7e-56  Click
6 complement(2509699..2510322)  PHAGE_Entero_mEpX1: late gene regulator Q; SPA2399; phage(gi428781929)  6e-117  Click
7 complement(2510319..2510507)  PHAGE_Entero_mEpX2: NinH protein; SPA2400; phage(gi428765670)  1e-29  Click
8 complement(2510504..2510866)  PHAGE_Escher_HK75: RusA-like protein; SPA2401; phage(gi356870726)  9e-64  Click
9 complement(2510863..2511153)  PHAGE_Salmon_SPN9CC: hypothetical protein; SPA2402; phage(gi389060524)  3e-53  Click
10 complement(2511351..2511527)  PHAGE_Entero_mEp234: NinF protein; SPA2403; phage(gi428782303)  7e-29  Click
11 complement(2511520..2511861)  PHAGE_Salmon_SE1: NinX; SPA2404; phage(gi219681228)  9e-64  Click
12 complement(2511864..2512040)  PHAGE_Entero_ST104: NinE; SPA2405; phage(gi46358680)  1e-29  Click
13 complement(2512007..2512180)  PHAGE_Salmon_SE1: NinD; SPA2406; phage(gi219681226)  2e-33  Click
14 complement(2512177..2512623)  PHAGE_Salmon_vB_SemP_Emek: NinB; SPA2407; phage(gi399498846)  6e-82  Click
15 complement(2512580..2512876)  PHAGE_Salmon_SE1: hypothetical protein SE1_gp33; SPA2408; phage(gi219681224)  7e-51  Click
16 complement(2513577..2513660)  PHAGE_Salmon_SPN9CC: NinA; SPA2409; phage(gi389060514)  2e-09  Click
17 complement(2513660..2515096)  PHAGE_Entero_ST64T: gp12; SPA2410; phage(gi24371561)  0.0  Click
18 complement(2515086..2515985)  PHAGE_Salmon_SE1: Gp18; SPA2411; phage(gi219681220)  2e-172  Click
19 complement(2515978..2516124)  PHAGE_Salmon_SE1: hypothetical protein SE1_gp28; SPA2412; phage(gi219681219)  4e-20  Click
20 complement(2516159..2516440)  PHAGE_Salmon_SE1: C1; SPA2413; phage(gi219681218)  1e-45  Click
21 2516877..2517566  PHAGE_Salmon_SE1: C2; SPA2414; phage(gi219681216)  7e-128  Click
22 2518781..2519083  PHAGE_Salmon_SE1: Gp24; SPA2415; phage(gi219681213)  2e-50  Click
23 complement(2519096..2519683)  PHAGE_Salmon_SE1: SieB; SPA2416; phage(gi219681212)  2e-107  Click
24 2519897..2520091  PHAGE_Salmon_SE1: Ral; SPA2418; phage(gi219681211)  2e-32  Click
25 2520128..2520421  PHAGE_Salmon_SE1: hypothetical protein SE1_gp19; SPA2419; phage(gi219681210)  2e-47  Click
26 2520736..2520888  PHAGE_Salmon_SE1: C3; SPA2420; phage(gi219681209)  3e-25  Click
27 2520869..2521057  PHAGE_Salmon_SE1: Kil; SPA2421; phage(gi219681208)  1e-32  Click
28 2521047..2521190  PHAGE_Salmon_SE1: Arf; SPA2422; phage(gi219681207)  4e-20  Click
29 2521316..2521894  PHAGE_Salmon_SE1: Erf; SPA2423; phage(gi219681206)  2e-112  Click
30 2521894..2522178  PHAGE_Salmon_SE1: Abc1; SPA2424; phage(gi219681205)  3e-48  Click
31 2522225..2522518  PHAGE_Entero_P22: Abc2; SPA2425; phage(gi9635503)  3e-51  Click
32 2522529..2522699  PHAGE_Salmon_SE1: hypothetical protein SE1_gp12; SPA2426; phage(gi219681203)  1e-23  Click
33 2523352..2523852  PHAGE_Salmon_c341: mosaic protein; SPA2427; phage(gi255252707)  8e-47  Click
34 2524618..2525703  PHAGE_Entero_P22: EaA; SPA2428; phage(gi9635497)  2e-85  Click
35 2525624..2525980  PHAGE_Stx2_c_I: hypothetical protein Stx2Ip086; SPA2429; phage(gi20065881)  7e-43  Click
36 2526080..2526091  attR    TTTGTCGCCGCG  N/A  Click
37 2526192..2526542  PHAGE_Salmon_SE1: Xis; SPA2430; phage(gi219681196)  4e-63  Click
38 2526419..2527582  PHAGE_Salmon_SE1: Int; SPA2431; phage(gi219681195)  0.0  Click
Region 3, total : 32 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2658327..2660507  PHAGE_Bacill_SPBc2: ABC transporter; SPA2550; phage(gi9630145)  1e-29  Click
2 2660515..2661678  type I secretion protein; SPA2551  N/A  Click
3 2661750..2662112  tRNA  N/A  Click
4 2662208..2662585  PHAGE_Burkho_KS14: gp9; SPA2554; phage(gi327198278)  1e-05  Click
5 complement(2662672..2662890)  PHAGE_Entero_2: P2 gpOgr-like protein (acttivation of late gene expression); SPA2555; phage(gi169936018)  1e-28  Click
6 complement(2662958..2664058)  PHAGE_Entero_2: P2 gpD-like tail protein; SPA2556; phage(gi169936019)  0.0  Click
7 complement(2664055..2664540)  PHAGE_Entero_2: P2 gpU-like tail protein; SPA2557; phage(gi169936020)  1e-82  Click
8 complement(2664540..2667320)  PHAGE_Entero_2: P2 gpT-like tail protein; SPA2558; phage(gi169936021)  4e-117  Click
9 complement(2667313..2667432)  PHAGE_Entero_2: P2 gpE-like protein; SPA2559; phage(gi169936022)  8e-15  Click
10 complement(2667447..2667749)  PHAGE_Entero_2: P2 gpE-like tail protein; SPA2560; phage(gi169936023)  4e-46  Click
11 complement(2667804..2668319)  PHAGE_Entero_2: P2 gpFII-like protein; SPA2561; phage(gi169936024)  7e-94  Click
12 complement(2668329..2669501)  PHAGE_Entero_2: P2 gpFI-like protein; SPA2562; phage(gi169936025)  0.0  Click
13 complement(2669604..2669822)  PHAGE_Entero_2: DNA-invertase; at; phage locus of e14 element; SPA2563(gi169936026)  5e-31  Click
14 2670036..2670758  invasion-associated secreted protein; SPA2564  N/A  Click
15 complement(2670956..2671363)  PHAGE_Entero_2: P2 gpG-like protein; SPA2565; phage(gi169936028)  8e-66  Click
16 complement(2671370..2672989)  PHAGE_Entero_2: P2 gpH-like protein; SPA2566; phage(gi169936030)  1e-161  Click
17 complement(2672986..2673591)  PHAGE_Entero_2: P2 gpI-like baseplate assembly protein; SPA2567; phage(gi169936031)  1e-116  Click
18 complement(2673584..2674492)  PHAGE_Entero_2: P2 gpJ-like baseplate assembly protein; SPA2568; phage(gi169936032)  6e-164  Click
19 complement(2674479..2674838)  PHAGE_Entero_2: P2 gpW-like baseplate protein; SPA2569; phage(gi169936033)  2e-58  Click
20 complement(2674835..2675413)  PHAGE_Entero_2: P2 gpV-like protein; SPA2570; phage(gi169936034)  1e-110  Click
21 complement(2675482..2675928)  PHAGE_Entero_2: P2 gpS-like tail completion protein; SPA2571; phage(gi169936035)  1e-77  Click
22 complement(2675921..2676352)  PHAGE_Entero_2: P2 gpR-like tail completion protein; SPA2572; phage(gi169936036)  3e-78  Click
23 complement(2676448..2676873)  PHAGE_Entero_2: P2 LysB-like protein; SPA2573; phage(gi169936038)  6e-69  Click
24 complement(2676873..2677250)  hypothetical protein; SPA2574  N/A  Click
25 complement(2677255..2677725)  PHAGE_Entero_2: endolysin; SPA2575; phage(gi169936041)  7e-87  Click
26 complement(2677745..2677960)  PHAGE_Entero_2: lysis protein; SPA2576; phage(gi169936042)  2e-35  Click
27 complement(2677964..2678167)  PHAGE_Entero_2: P2 gpX-like tail protein; SPA2577; phage(gi169936043)  9e-35  Click
28 complement(2678167..2678631)  PHAGE_Entero_2: P2 gpL-like protein; SPA2578; phage(gi169936044)  6e-86  Click
29 complement(2678725..2679375)  PHAGE_Entero_2: P2 gpM-like protein; SPA2579; phage(gi169936045)  8e-116  Click
30 complement(2679379..2680443)  PHAGE_Entero_2: P2 gpN-like major capsid protein; SPA2580; phage(gi169936046)  0.0  Click
31 complement(2680460..2681293)  PHAGE_Entero_2: P2 gpO-like protein; SPA2581; phage(gi169936047)  2e-145  Click
32 2681436..2683202  PHAGE_Entero_2: P2 gpP-like protein; SPA2582; phage(gi169936048)  0.0  Click
33 2683202..2684245  PHAGE_Entero_2: P2 gpQ-like protein; SPA2583; phage(gi169936049)  2e-177  Click
Region 4, total : 73 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2656859..2656871  attL    AAAAAGCCCCGAA  N/A  Click
2 2658327..2660507  PHAGE_Bacill_SPBc2: ABC transporter; SPA2550; phage(gi9630145)  1e-29  Click
3 2660515..2661678  type I secretion protein; SPA2551  N/A  Click
4 2661750..2662112  tRNA  N/A  Click
5 2662124..2662142  attL    GGGTTACGTGAAAACGTAG  N/A  Click
6 2662208..2662585  PHAGE_Burkho_KS14: gp9; SPA2554; phage(gi327198278)  1e-05  Click
7 complement(2662672..2662890)  PHAGE_Entero_2: P2 gpOgr-like protein (acttivation of late gene expression); SPA2555; phage(gi169936018)  1e-28  Click
8 complement(2662958..2664058)  PHAGE_Entero_2: P2 gpD-like tail protein; SPA2556; phage(gi169936019)  0.0  Click
9 complement(2664055..2664540)  PHAGE_Entero_2: P2 gpU-like tail protein; SPA2557; phage(gi169936020)  1e-82  Click
10 complement(2664540..2667320)  PHAGE_Entero_2: P2 gpT-like tail protein; SPA2558; phage(gi169936021)  4e-117  Click
11 complement(2667313..2667432)  PHAGE_Entero_2: P2 gpE-like protein; SPA2559; phage(gi169936022)  8e-15  Click
12 complement(2667447..2667749)  PHAGE_Entero_2: P2 gpE-like tail protein; SPA2560; phage(gi169936023)  4e-46  Click
13 complement(2667804..2668319)  PHAGE_Entero_2: P2 gpFII-like protein; SPA2561; phage(gi169936024)  7e-94  Click
14 complement(2668329..2669501)  PHAGE_Entero_2: P2 gpFI-like protein; SPA2562; phage(gi169936025)  0.0  Click
15 complement(2669604..2669822)  PHAGE_Entero_2: DNA-invertase; at; phage locus of e14 element; SPA2563(gi169936026)  5e-31  Click
16 2670036..2670758  invasion-associated secreted protein; SPA2564  N/A  Click
17 complement(2670956..2671363)  PHAGE_Entero_2: P2 gpG-like protein; SPA2565; phage(gi169936028)  8e-66  Click
18 complement(2671370..2672989)  PHAGE_Entero_2: P2 gpH-like protein; SPA2566; phage(gi169936030)  1e-161  Click
19 complement(2672986..2673591)  PHAGE_Entero_2: P2 gpI-like baseplate assembly protein; SPA2567; phage(gi169936031)  1e-116  Click
20 complement(2673584..2674492)  PHAGE_Entero_2: P2 gpJ-like baseplate assembly protein; SPA2568; phage(gi169936032)  6e-164  Click
21 complement(2674479..2674838)  PHAGE_Entero_2: P2 gpW-like baseplate protein; SPA2569; phage(gi169936033)  2e-58  Click
22 complement(2674835..2675413)  PHAGE_Entero_2: P2 gpV-like protein; SPA2570; phage(gi169936034)  1e-110  Click
23 complement(2675482..2675928)  PHAGE_Entero_2: P2 gpS-like tail completion protein; SPA2571; phage(gi169936035)  1e-77  Click
24 complement(2675921..2676352)  PHAGE_Entero_2: P2 gpR-like tail completion protein; SPA2572; phage(gi169936036)  3e-78  Click
25 complement(2676448..2676873)  PHAGE_Entero_2: P2 LysB-like protein; SPA2573; phage(gi169936038)  6e-69  Click
26 complement(2676873..2677250)  hypothetical protein; SPA2574  N/A  Click
27 complement(2677255..2677725)  PHAGE_Entero_2: endolysin; SPA2575; phage(gi169936041)  7e-87  Click
28 complement(2677745..2677960)  PHAGE_Entero_2: lysis protein; SPA2576; phage(gi169936042)  2e-35  Click
29 complement(2677964..2678167)  PHAGE_Entero_2: P2 gpX-like tail protein; SPA2577; phage(gi169936043)  9e-35  Click
30 complement(2678167..2678631)  PHAGE_Entero_2: P2 gpL-like protein; SPA2578; phage(gi169936044)  6e-86  Click
31 complement(2678725..2679375)  PHAGE_Entero_2: P2 gpM-like protein; SPA2579; phage(gi169936045)  8e-116  Click
32 complement(2679379..2680443)  PHAGE_Entero_2: P2 gpN-like major capsid protein; SPA2580; phage(gi169936046)  0.0  Click
33 complement(2680460..2681293)  PHAGE_Entero_2: P2 gpO-like protein; SPA2581; phage(gi169936047)  2e-145  Click
34 2681436..2683202  PHAGE_Entero_2: P2 gpP-like protein; SPA2582; phage(gi169936048)  0.0  Click
35 2683202..2684245  PHAGE_Entero_2: P2 gpQ-like protein; SPA2583; phage(gi169936049)  2e-177  Click
36 complement(2684294..2684989)  hypothetical protein; SPA2584  N/A  Click
37 complement(2685009..2686073)  hypothetical protein; SPA2585  N/A  Click
38 complement(2686070..2687134)  hypothetical protein; SPA2586  N/A  Click
39 complement(2687144..2687362)  hypothetical protein; SPA2587  N/A  Click
40 complement(2687458..2687691)  PHAGE_Entero_2: TumB protein; SPA2588; phage(gi169936052)  3e-34  Click
41 complement(2687703..2687891)  PHAGE_Entero_2: hypothetical protein STM2728.Fels2; SPA2589; phage(gi169936053)  8e-25  Click
42 complement(2688059..2690461)  PHAGE_Entero_2: P2 gpA-like protein; SPA2590; phage(gi169936054)  0.0  Click
43 complement(2690452..2691312)  PHAGE_Entero_2: DNA adenine methylase-like protein; SPA2591; phage(gi169936055)  3e-130  Click
44 complement(2691309..2691893)  PHAGE_Vibrio_vB_VpaM_MAR: putative exonuclease; SPA2592; phage(gi428782757)  2e-45  Click
45 complement(2691890..2692117)  PHAGE_Entero_2: P2 gpOrf82-like protein; SPA2593; phage(gi169936056)  9e-40  Click
46 complement(2692117..2692350)  PHAGE_Entero_2: hypothetical protein STM2732.Fels2; SPA2594; phage(gi169936057)  1e-35  Click
47 complement(2692418..2692759)  PHAGE_Entero_2: hypothetical protein STM2733.Fels2; SPA2595; phage(gi169936058)  2e-49  Click
48 complement(2692723..2692923)  PHAGE_Entero_2: hypothetical protein STM2735.Fels2; SPA2596; phage(gi169936060)  9e-13  Click
49 complement(2692931..2693440)  PHAGE_Entero_2: bacteriophage regulatory protein CII; SPA2597; phage(gi169936061)  5e-91  Click
50 complement(2693473..2693715)  PHAGE_Entero_2: bacteriophage regulatory protein Ap1; SPA2598; phage(gi169936062)  2e-40  Click
51 2693832..2694464  PHAGE_Entero_2: P2 CI-like protein; SPA2599; phage(gi169936063)  5e-116  Click
52 2694468..2695493  PHAGE_Entero_2: P2 Int-like protein; SPA2600; phage(gi169936064)  0.0  Click
53 2695667..2695685  attR    GGGTTACGTGAAAACGTAG  N/A  Click
54 2696026..2696784  PHAGE_Entero_2: P2 Int-like protein; SPA2601; phage(gi169936064)  2e-62  Click
55 complement(2699408..2701108)  PHAGE_Haemop_HP2: orf35; SPA2602; phage(gi17981851)  3e-123  Click
56 complement(2701111..2701602)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_45; SPA2603; phage(gi148727174)  1e-36  Click
57 complement(2701628..2702353)  PHAGE_Haemop_HP1: hypothetical protein HP1p40; SPA2604; phage(gi9628639)  2e-13  Click
58 complement(2702343..2702870)  PHAGE_Entero_2: P2 gpG-like protein; SPA2605; phage(gi169936029)  4e-39  Click
59 complement(2704925..2705500)  PHAGE_Pasteu_F108: hypothetical protein F108p36; SPA2607; phage(gi109302932)  3e-46  Click
60 complement(2705505..2706638)  PHAGE_Haemop_HP2: orf29; SPA2608; phage(gi17981845)  3e-113  Click
61 complement(2706686..2707015)  PHAGE_Haemop_HP1: hypothetical protein HP1p35; SPA2609; phage(gi9628634)  4e-28  Click
62 complement(2707012..2708982)  PHAGE_Aeromo_phiO18P: putative tail tape measure protein; SPA2610; phage(gi148727166)  7e-78  Click
63 complement(2709170..2709427)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_36; SPA2611; phage(gi148727164)  3e-23  Click
64 complement(2710244..2710537)  PHAGE_Burkho_KS9: holin gp22; SPA2612; phage(gi255033753)  1e-17  Click
65 complement(2710547..2711002)  PHAGE_Aeromo_phiO18P: putative tail tube protein; SPA2613; phage(gi148727159)  3e-48  Click
66 complement(2710999..2712126)  PHAGE_Aeromo_phiO18P: putative tail sheath protein; SPA2614; phage(gi148727158)  2e-107  Click
67 complement(2712123..2712830)  PHAGE_Aeromo_phiO18P: putative tail completion protein; SPA2615; phage(gi148727157)  9e-38  Click
68 complement(2712827..2713333)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_27; SPA2616; phage(gi148727156)  3e-13  Click
69 complement(2713330..2713782)  PHAGE_Aeromo_phiO18P: putative head completion protein; SPA2617; phage(gi148727155)  3e-31  Click
70 complement(2713879..2714538)  PHAGE_Aeromo_phiO18P: putative terminase small subunit; SPA2618; phage(gi148727154)  2e-52  Click
71 complement(2714584..2715555)  PHAGE_Aeromo_phiO18P: putative major capsid protein; SPA2619; phage(gi148727153)  1e-91  Click
72 2716629..2718404  PHAGE_Vibrio_kappa: putative terminase ATPase subunit; SPA2620; phage(gi165970256)  0.0  Click
73 2718401..2719462  PHAGE_Vibrio_kappa: hypothetical pbsx family phage portal protein; SPA2621; phage(gi165970255)  7e-79  Click
74 2719513..2719782  PHAGE_Vibrio_kappa: hypothetical zinc-finger protein; SPA2622; phage(gi165970253)  2e-20  Click
75 complement(2720087..2721619)  PHAGE_Erwini_ENT90: replication protein A; SPA2623; phage(gi431810936)  2e-121  Click
76 complement(2722149..2722961)  PHAGE_Entero_2: DNA adenine methylase-like protein; SPA2624; phage(gi169936055)  5e-65  Click
77 complement(2724303..2724833)  PHAGE_Entero_2: bacteriophage regulatory protein CII; SPA2625; phage(gi169936061)  2e-38  Click
78 2729012..2729024  attR    AAAAAGCCCCGAA  N/A  Click