| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
Legend
| Hits against Virus and prophage DB | |
| Hits against Bacterial DB or GenBank file |
Region 1, total : 24 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 28359..30107 | PHAGE_Nocard_NBR1: terminase large subunit; nfa390; phage(gi372217589) | 0.0 | Click |
| 2 | 30120..30401 | hypothetical protein; nfa400 | N/A | Click |
| 3 | 30405..31676 | PHAGE_Nocard_NBR1: portal protein; nfa410; phage(gi372217591) | 4e-54 | Click |
| 4 | 31673..32464 | PHAGE_Nocard_NBR1: prohead protease; nfa420; phage(gi372217592) | 6e-34 | Click |
| 5 | 32490..33800 | PHAGE_Entero_mEp234: major head subunit; nfa430; phage(gi428782259) | 1e-48 | Click |
| 6 | 33803..34045 | hypothetical protein; nfa440 | N/A | Click |
| 7 | 34046..34588 | PHAGE_Nocard_NBR1: hypothetical protein; nfa450; phage(gi372217596) | 2e-08 | Click |
| 8 | 34597..34890 | PHAGE_Mycoba_Giles: gp12; nfa460; phage(gi160700661) | 4e-06 | Click |
| 9 | 34890..35141 | PHAGE_Mycoba_Giles: gp13; nfa470; phage(gi160700662) | 3e-08 | Click |
| 10 | 35138..35545 | PHAGE_Mycoba_Giles: gp14; nfa480; phage(gi160700663) | 6e-16 | Click |
| 11 | 35579..36115 | PHAGE_Mycoba_Giles: gp15; nfa490; phage(gi160700664) | 2e-21 | Click |
| 12 | 36200..36559 | hypothetical protein; nfa500 | N/A | Click |
| 13 | 36972..40532 | PHAGE_Coryne_BFK20: gp15, minor tail protein; nfa510; phage(gi157168388) | 9e-103 | Click |
| 14 | 40532..41428 | PHAGE_Rhodoc_RER2: minor tail protein; nfa520; phage(gi372449917) | 4e-19 | Click |
| 15 | 41428..43053 | PHAGE_Nocard_NBR1: putative minor tail protein; nfa530; phage(gi372217611) | 3e-55 | Click |
| 16 | 43064..44125 | PHAGE_Nocard_NBR1: putative tail protein; nfa540; phage(gi372217616) | 2e-16 | Click |
| 17 | 44122..45204 | PHAGE_Gordon_GTE5: putative minor tail protein; nfa550; phage(gi359802297) | 1e-21 | Click |
| 18 | 45201..46256 | PHAGE_Nocard_NBR1: putative tail protein; nfa560; phage(gi372217616) | 5e-15 | Click |
| 19 | 46253..46891 | hypothetical protein; nfa570 | N/A | Click |
| 20 | 46884..47696 | PHAGE_Mycoba_Spud: gp242; nfa580; phage(gi203460727) | 1e-68 | Click |
| 21 | 47693..47908 | hypothetical protein; nfa590 | N/A | Click |
| 22 | 47905..48354 | PHAGE_Gordon_GTE2: hypothetical protein; nfa600; phage(gi338826877) | 2e-14 | Click |
| 23 | 48347..48694 | hypothetical protein; nfa610 | N/A | Click |
| 24 | 48687..50108 | PHAGE_Mycoba_Rizal: gp132; nfa620; phage(gi203457479) | 4e-25 | Click |
Region 2, total : 54 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1669018..1669030 | attL CGACACCGACACC | N/A | Click |
| 2 | 1670048..1670428 | PHAGE_Mycoba_Kostya: gp86; nfa15070; phage(gi194303139) | 5e-22 | Click |
| 3 | 1670425..1670676 | hypothetical protein; nfa15080 | N/A | Click |
| 4 | complement(1670677..1671897) | PHAGE_Gifsy_1: transposase; nfa15090; phage(gi169257226) | 2e-93 | Click |
| 5 | 1672002..1672331 | hypothetical protein; nfa15100 | N/A | Click |
| 6 | 1672625..1673275 | PHAGE_Rhodoc_REQ2: hypothetical protein; nfa15110; phage(gi372449901) | 4e-41 | Click |
| 7 | 1673351..1673602 | PHAGE_Rhodoc_REQ2: hypothetical protein; nfa15120; phage(gi372449902) | 1e-13 | Click |
| 8 | 1673772..1674026 | PHAGE_Staphy_EW: ORF058; nfa15130; phage(gi66395855) | 8e-15 | Click |
| 9 | 1674051..1674416 | hypothetical protein; nfa15140 | N/A | Click |
| 10 | 1674409..1674621 | hypothetical protein; nfa15150 | N/A | Click |
| 11 | 1674731..1674973 | hypothetical protein; nfa15160 | N/A | Click |
| 12 | 1675323..1676468 | PHAGE_Gifsy_1: transposase; nfa15170; phage(gi169257226) | 1e-72 | Click |
| 13 | 1676485..1676934 | hypothetical protein; nfa15180 | N/A | Click |
| 14 | 1676931..1677107 | hypothetical protein; nfa15190 | N/A | Click |
| 15 | 1677107..1677457 | hypothetical protein; nfa15200 | N/A | Click |
| 16 | 1678156..1678695 | PHAGE_Strept_phiSASD1: gp21; nfa15210; phage(gi298103486) | 1e-08 | Click |
| 17 | 1678745..1679746 | PHAGE_Strept_phiSASD1: gp22; nfa15220; phage(gi298103487) | 3e-93 | Click |
| 18 | 1679724..1680326 | PHAGE_Strept_phiSASD1: gp22; nfa15230; phage(gi298103487) | 1e-52 | Click |
| 19 | 1680331..1681779 | PHAGE_Mycoba_SWU1: portal protein; nfa15240; phage(gi388570534) | 4e-50 | Click |
| 20 | 1681779..1683710 | PHAGE_Strept_phiSASD1: gp24; nfa15250; phage(gi298103489) | 8e-16 | Click |
| 21 | 1683775..1684314 | PHAGE_Mycoba_TM4: hypothetical protein TM4_gp8; nfa15260; phage(gi18496894) | 5e-07 | Click |
| 22 | 1684338..1684706 | PHAGE_Strept_VWB: ORFp14; nfa15270; phage(gi41057253) | 3e-18 | Click |
| 23 | 1684722..1685750 | PHAGE_Gordon_GTE5: main capsid protein; nfa15280; phage(gi359802285) | 6e-38 | Click |
| 24 | 1685747..1686025 | hypothetical protein; nfa15290 | N/A | Click |
| 25 | 1686012..1686407 | hypothetical protein; nfa15300 | N/A | Click |
| 26 | 1686404..1686796 | hypothetical protein; nfa15310 | N/A | Click |
| 27 | 1686800..1686997 | hypothetical protein; nfa15320 | N/A | Click |
| 28 | 1686997..1687347 | hypothetical protein; nfa15330 | N/A | Click |
| 29 | 1687344..1687784 | hypothetical protein; nfa15340 | N/A | Click |
| 30 | 1687833..1688651 | PHAGE_Mycoba_Bxb1: gp14; nfa15350; phage(gi12657868) | 2e-10 | Click |
| 31 | 1688651..1689085 | hypothetical protein; nfa15360 | N/A | Click |
| 32 | 1689082..1689486 | hypothetical protein; nfa15370 | N/A | Click |
| 33 | 1689491..1693975 | PHAGE_Geobac_E2: putative tail tape measure protein; nfa15380; phage(gi148747742) | 3e-45 | Click |
| 34 | 1693972..1694913 | PHAGE_Rhodoc_REQ3: minor tail protein; nfa15390; phage(gi372450020) | 1e-55 | Click |
| 35 | 1694910..1696562 | PHAGE_Rhodoc_REQ3: minor tail protein; nfa15400; phage(gi372450021) | 4e-166 | Click |
| 36 | 1696572..1697156 | PHAGE_Rhodoc_REQ3: hypothetical protein; nfa15410; phage(gi372450022) | 3e-13 | Click |
| 37 | 1697156..1697713 | PHAGE_Rhodoc_RRH1: putative lysin; nfa15420; phage(gi372449805) | 5e-59 | Click |
| 38 | 1697713..1698645 | PHAGE_Gordon_GTE2: hypothetical protein; nfa15430; phage(gi338826876) | 4e-74 | Click |
| 39 | 1698642..1698887 | hypothetical protein; nfa15440 | N/A | Click |
| 40 | 1698884..1699177 | hypothetical protein; nfa15450 | N/A | Click |
| 41 | 1699155..1699367 | hypothetical protein; nfa15460 | N/A | Click |
| 42 | 1699364..1699732 | PHAGE_Nocard_NBR1: hypothetical protein; nfa15470; phage(gi372217624) | 3e-09 | Click |
| 43 | 1699729..1700394 | hypothetical protein; nfa15480 | N/A | Click |
| 44 | 1700447..1700728 | hypothetical protein; nfa15490 | N/A | Click |
| 45 | 1700725..1701975 | hypothetical protein; nfa15500 | N/A | Click |
| 46 | 1701972..1702289 | hypothetical protein; nfa15510 | N/A | Click |
| 47 | 1702330..1702635 | PHAGE_Mycoba_Giles: gp28; nfa15520; phage(gi160700677) | 2e-17 | Click |
| 48 | 1702635..1703819 | PHAGE_Equid__9: envelope glycoprotein J; nfa15530; phage(gi216905924) | 3e-09 | Click |
| 49 | 1703829..1704149 | hypothetical protein; nfa15540 | N/A | Click |
| 50 | complement(1704146..1704505) | hypothetical protein; nfa15550 | N/A | Click |
| 51 | complement(1704606..1704986) | hypothetical protein; nfa15560 | N/A | Click |
| 52 | complement(1705027..1705194) | hypothetical protein; nfa15570 | N/A | Click |
| 53 | complement(1705191..1705544) | hypothetical protein; nfa15580 | N/A | Click |
| 54 | complement(1705599..1706774) | PHAGE_Strept_R4: putative DNA binding protein, XRE family; nfa15590; phage(gi414090036) | 5e-76 | Click |
| 55 | 1706670..1706682 | attR CGACACCGACACC | N/A | Click |
| 56 | complement(1706994..1707866) | PHAGE_Mycoba_BPs: integrase; nfa15600; phage(gi189043119) | 4e-79 | Click |
Region 3, total : 41 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 4103113..4103125 | attL GCTGCACCCCTAC | N/A | Click |
| 2 | complement(4104268..4105584) | PROPHAGE_Mesorh_MAFF303099: bacteriophage integrase; nfa38910; phage(gi13470699) | 4e-05 | Click |
| 3 | complement(4105609..4105803) | hypothetical protein; nfa38920 | N/A | Click |
| 4 | complement(4105949..4106791) | putative DNA-binding protein; nfa38930 | N/A | Click |
| 5 | complement(4106788..4107303) | hypothetical protein; nfa38940 | N/A | Click |
| 6 | complement(4107272..4107613) | hypothetical protein; nfa38950 | N/A | Click |
| 7 | 4107841..4108107 | hypothetical protein; nfa38960 | N/A | Click |
| 8 | 4108104..4108307 | hypothetical protein; nfa38970 | N/A | Click |
| 9 | 4108304..4108576 | hypothetical protein; nfa38980 | N/A | Click |
| 10 | complement(4108628..4108969) | hypothetical protein; nfa38990 | N/A | Click |
| 11 | complement(4108976..4109350) | hypothetical protein; nfa39000 | N/A | Click |
| 12 | complement(4109389..4109661) | hypothetical protein; nfa39010 | N/A | Click |
| 13 | complement(4109668..4110576) | PHAGE_Equid__1: envelope glycoprotein J; nfa39020; phage(gi50313312) | 2e-09 | Click |
| 14 | complement(4110584..4110937) | PHAGE_Mycoba_Che8: gp22; nfa39030; phage(gi29565788) | 2e-19 | Click |
| 15 | complement(4111029..4111337) | PHAGE_Mycoba_Che9d: gp21; nfa39040; phage(gi29566428) | 1e-06 | Click |
| 16 | complement(4111369..4111854) | hypothetical protein; nfa39050 | N/A | Click |
| 17 | complement(4111856..4112707) | hypothetical protein; nfa39060 | N/A | Click |
| 18 | complement(4112733..4113098) | hypothetical protein; nfa39070 | N/A | Click |
| 19 | complement(4113105..4113446) | PHAGE_Mycoba_Pipefish: gp17; nfa39080; phage(gi109521857) | 6e-10 | Click |
| 20 | complement(4113480..4114550) | PHAGE_Tsukam_TPA2: lysin; nfa39090; phage(gi326425073) | 2e-110 | Click |
| 21 | complement(4114550..4115245) | PHAGE_Mycoba_Che9d: gp20; nfa39100; phage(gi29566427) | 7e-27 | Click |
| 22 | complement(4115257..4116984) | PHAGE_Rhodoc_REQ3: minor tail protein; nfa39110; phage(gi372450021) | 8e-100 | Click |
| 23 | complement(4116981..4117910) | PHAGE_Rhodoc_REQ3: minor tail protein; nfa39120; phage(gi372450020) | 4e-31 | Click |
| 24 | complement(4117916..4123306) | PHAGE_Gordon_GTE7: phage tape measure protein; nfa39130; phage(gi358356869) | 4e-71 | Click |
| 25 | complement(4123395..4124012) | hypothetical protein; nfa39140 | N/A | Click |
| 26 | complement(4124099..4124488) | PHAGE_Gordon_GTE5: tail assembly protein; nfa39150; phage(gi359802293) | 1e-06 | Click |
| 27 | complement(4124545..4124925) | hypothetical protein; nfa39160 | N/A | Click |
| 28 | complement(4124953..4125219) | hypothetical protein; nfa39170 | N/A | Click |
| 29 | complement(4125316..4126236) | PHAGE_Coryne_P1201: putative major tail protein; nfa39180; phage(gi157310944) | 8e-33 | Click |
| 30 | complement(4126317..4126694) | hypothetical protein; nfa39190 | N/A | Click |
| 31 | complement(4126694..4126993) | hypothetical protein; nfa39200 | N/A | Click |
| 32 | complement(4126974..4127342) | hypothetical protein; nfa39210 | N/A | Click |
| 33 | complement(4127336..4127758) | PHAGE_Rhodoc_REQ3: hypothetical protein; nfa39220; phage(gi372450013) | 5e-19 | Click |
| 34 | complement(4127758..4128000) | hypothetical protein; nfa39230 | N/A | Click |
| 35 | complement(4128067..4128990) | PHAGE_Strept_R4: putative major capsid; nfa39240; phage(gi414089994) | 3e-15 | Click |
| 36 | complement(4129005..4129736) | PHAGE_Helico_2: hypothetical protein; nfa39250; phage(gi370703036) | 1e-07 | Click |
| 37 | complement(4129952..4130030) | tRNA | N/A | Click |
| 38 | complement(4130041..4130328) | hypothetical protein; nfa39260 | N/A | Click |
| 39 | complement(4130325..4130831) | hypothetical protein; nfa39270 | N/A | Click |
| 40 | 4130850..4131743 | PROPHAGE_Shewan_MR-1: ISSod6, transposase; nfa39280; phage(gi24374783) | 1e-35 | Click |
| 41 | complement(4131753..4133156) | PHAGE_Rhodoc_REQ3: minor capsid protein; nfa39290; phage(gi372450008) | 2e-29 | Click |
| 42 | complement(4133156..4134790) | PHAGE_Rhodoc_REQ3: portal protein; nfa39300; phage(gi372450007) | 2e-63 | Click |
| 43 | complement(4134849..4135991) | PHAGE_Mycoba_TM4: hypothetical protein TM4_gp36; nfa39310; phage(gi18496921) | 3e-87 | Click |
| 44 | 4143292..4143304 | attR GCTGCACCCCTAC | N/A | Click |
Region 4, total : 23 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(4136309..4137619) | PHAGE_Strept_SV1: putative large terminase; nfa39330; phage(gi410491721) | 9e-113 | Click |
| 2 | complement(4137616..4138149) | putative DNA-binding protein; nfa39340 | N/A | Click |
| 3 | complement(4138194..4138376) | hypothetical protein; nfa39350 | N/A | Click |
| 4 | complement(4138490..4138624) | hypothetical protein; nfa39360 | N/A | Click |
| 5 | complement(4138621..4138905) | PHAGE_Mycoba_Cjw1: gp112; nfa39370; phage(gi29565988) | 1e-06 | Click |
| 6 | complement(4138907..4139062) | hypothetical protein; nfa39380 | N/A | Click |
| 7 | complement(4139078..4139356) | hypothetical protein; nfa39390 | N/A | Click |
| 8 | complement(4139340..4139561) | PHAGE_Mycoba_Lockley: gp62; nfa39400; phage(gi192824148) | 5e-08 | Click |
| 9 | complement(4139576..4139815) | PHAGE_Mycoba_ET08: gp230; nfa39410; phage(gi281416142) | 1e-10 | Click |
| 10 | complement(4139812..4140054) | PHAGE_Mycoba_Cjw1: gp37; nfa39420; phage(gi29565916) | 6e-12 | Click |
| 11 | complement(4140218..4141201) | PHAGE_Phthor_granulovirus: occlusion derived virus envelope protein 66; nfa39430; phage(gi21686698) | 1e-06 | Click |
| 12 | 4141565..4142413 | hypothetical protein; nfa39440 | N/A | Click |
| 13 | complement(4143151..4143226) | tRNA | N/A | Click |
| 14 | complement(4143224..4143302) | tRNA | N/A | Click |
| 15 | complement(4143309..4143387) | tRNA | N/A | Click |
| 16 | complement(4143430..4143744) | PHAGE_Mycoba_Che9d: gp41; nfa39450; phage(gi29566448) | 3e-15 | Click |
| 17 | complement(4144217..4144906) | PHAGE_Bacill_vB_BceM_Bc431v3: putative tRNA-His guanylyltransferase; nfa39460; phage(gi472437581) | 2e-41 | Click |
| 18 | complement(4144903..4145730) | PHAGE_Aeromo_CC2: hypothetical protein; nfa39470; phage(gi423261843) | 2e-54 | Click |
| 19 | complement(4145730..4146323) | PHAGE_Coryne_P1201: gp23; nfa39480; phage(gi157310929) | 8e-05 | Click |
| 20 | complement(4146320..4146586) | hypothetical protein; nfa39490 | N/A | Click |
| 21 | complement(4146583..4147542) | PHAGE_Mycoba_Che9c: gp68; nfa39500; phage(gi29566174) | 5e-92 | Click |
| 22 | complement(4147535..4147912) | hypothetical protein; nfa39510 | N/A | Click |
| 23 | complement(4147916..4148485) | hypothetical protein; nfa39520 | N/A | Click |
| 24 | complement(4148485..4149435) | PHAGE_Mycoba_Cjw1: gp89; nfa39530; phage(gi29565967) | 3e-50 | Click |
| 25 | complement(4149432..4149704) | hypothetical protein; nfa39540 | N/A | Click |
| 26 | complement(4149701..4150984) | PHAGE_Mycoba_Cjw1: gp93; nfa39550; phage(gi29565971) | 1e-117 | Click |
| 27 | complement(4151018..4151800) | PHAGE_Mycoba_LeBron: gp46; nfa39560; phage(gi304360992) | 2e-36 | Click |