Definition Pseudomonas syringae pv. phaseolicola 1448A chromosome, complete genome.
Accession NC_005773
Length 5,928,787
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 20 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 767035..767053  attL    TGGCGTTGGCGCGCCTGAC  N/A  Click
2 complement(770972..771238)  prophage PSPPH01 transcriptional regulator; PSPPH_0651  N/A  Click
3 complement(771336..771584)  hypothetical protein; PSPPH_0652  N/A  Click
4 complement(771739..772386)  PHAGE_Entero_ST64T: C2; PSPPH_0653; phage(gi24371557)  8e-52  Click
5 772540..772983  hypothetical protein; PSPPH_0654  N/A  Click
6 773453..774625  prophage PSPPH01 cellulase; PSPPH_0655  N/A  Click
7 774748..775137  PHAGE_Erwini_PEp14: holin; PSPPH_0656; phage(gi374531877)  3e-07  Click
8 775118..775456  PHAGE_Erwini_PEp14: hypothetical protein; PSPPH_0657; phage(gi374531878)  4e-06  Click
9 775428..775847  PHAGE_Entero_SfV: tail sheath protein; PSPPH_0658; phage(gi19549001)  2e-22  Click
10 775908..776252  PHAGE_Entero_SfV: hypothetical protein SfVp12; PSPPH_0659; phage(gi19549002)  9e-18  Click
11 776249..776545  PHAGE_Entero_SfV: hypothetical protein SfVp13; PSPPH_0660; phage(gi19549003)  2e-14  Click
12 778810..780195  PHAGE_Entero_SfV: tail/DNA circulation protein; PSPPH_0662; phage(gi19549005)  1e-45  Click
13 780199..781326  PHAGE_Entero_SfV: tail protein; PSPPH_0663; phage(gi19549006)  5e-66  Click
14 781323..781418  hypothetical protein; PSPPH_0664  N/A  Click
15 781547..782092  PHAGE_Cronob_vB_CsaM_GAP31: lysozyme; PSPPH_0665; phage(gi414086784)  3e-52  Click
16 782104..782598  PHAGE_Burkho_DC1: Rz; PSPPH_0666; phage(gi401723083)  2e-09  Click
17 782831..782849  attR    TGGCGTTGGCGCGCCTGAC  N/A  Click
18 783191..784366  PROPHAGE_Escher_CFT073: putative prophage integrase; PSPPH_0667; phage(gi26250313)  7e-75  Click
19 complement(784730..784930)  PHAGE_Stenot_S1: putative repressor protein; PSPPH_0668; phage(gi213163928)  3e-08  Click
20 complement(784927..785664)  PHAGE_Burkho_phiE125: putative PAPS reductase/sulfotransferase; PSPPH_0669; phage(gi17975219)  3e-57  Click
21 785689..787278  PHAGE_Haemop_SuMu: bacteriophage tail length determination protein; PSPPH_0670; phage(gi418489066)  5e-13  Click
22 787275..788396  PHAGE_Salmon_vB_SosS_Oslo: error-prone lesion bypass DNA polymerase V; PSPPH_0671; phage(gi399528790)  7e-90  Click
Region 2, total : 19 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1540644..1540656  attL    AGCGCTTGCTGAC  N/A  Click
2 1554911..1555420  PHAGE_Gordon_GTE2: putative deaminase; PSPPH_1339; phage(gi338826893)  9e-08  Click
3 complement(1555417..1557096)  PHAGE_Entero_285P: gp16; PSPPH_1340; phage(gi326536141)  3e-08  Click
4 1557076..1561017  PHAGE_Macaci_4: BNRF1; PSPPH_1341; phage(gi51518016)  9e-33  Click
5 1561023..1561334  PHAGE_Megavi_lba: hypothetical protein; PSPPH_1342; phage(gi448826036)  2e-16  Click
6 complement(1561483..1562046)  hypothetical protein; PSPPH_1343  N/A  Click
7 complement(1562110..1562661)  PHAGE_Burkho_Bcep1: gp18; PSPPH_1344; phage(gi38638625)  3e-07  Click
8 1562812..1563408  mutT/nudix family protein; PSPPH_1345  N/A  Click
9 1563500..1564024  PHAGE_Bathyc_BpV1: hypothetical protein; PSPPH_1346; phage(gi313768028)  1e-07  Click
10 1564024..1564242  hypothetical protein; PSPPH_1347  N/A  Click
11 1564364..1564975  hypothetical protein; PSPPH_1348  N/A  Click
12 1565079..1566260  phosphoribosylglycinamide formyltransferase 2; PSPPH_1349  N/A  Click
13 complement(1566317..1567810)  PHAGE_Burkho_phi1026b: gp59; PSPPH_1350; phage(gi38707949)  3e-41  Click
14 complement(1567777..1569024)  CBS domain-containing protein; PSPPH_1351  N/A  Click
15 complement(1569037..1569891)  cytochrome C assembly family protein; PSPPH_1352  N/A  Click
16 1569934..1571439  signal recognition particle protein; PSPPH_1353  N/A  Click
17 1571687..1571944  30S ribosomal protein S16; PSPPH_1354  N/A  Click
18 1571950..1572489  16S rRNA-processing protein RimM; PSPPH_1355  N/A  Click
19 1572495..1573247  tRNA (guanine-N(1)-)-methyltransferase; PSPPH_1356  N/A  Click
20 1573292..1573642  50S ribosomal protein L19; PSPPH_1357  N/A  Click
21 1573745..1574641  PHAGE_Thermu_45: XerD-like integrase; PSPPH_1358; phage(gi157265299)  2e-15  Click
22 1579391..1579403  attR    AGCGCTTGCTGAC  N/A  Click
Region 3, total : 7 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2179696..2180799  PROPHAGE_Xantho_33913: IS1480 transposase; PSPPH_1878; phage(gi21231089)  6e-20  Click
2 2181745..2181951  PHAGE_Entero_PsP3: gp8; PSPPH_1880; phage(gi41057360)  4e-09  Click
3 2182028..2183068  PHAGE_Entero_PsP3: gp26; PSPPH_1881; phage(gi41057378)  1e-44  Click
4 2183107..2183652  PHAGE_Salmon_PVP_SE1: lysozyme; PSPPH_1882; phage(gi363539668)  2e-52  Click
5 2183856..2184650  PHAGE_Burkho_KS9: DNA adenine methylase gp25; PSPPH_1883; phage(gi255033757)  3e-100  Click
6 2185184..2185672  hypothetical protein; PSPPH_1885  N/A  Click
7 2185682..2186659  PHAGE_Vibrio_VP882: phage-related tail protein; PSPPH_1886; phage(gi126010872)  3e-06  Click
Region 4, total : 11 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2180924..2180937  attL    GCCCGAACACAAAA  N/A  Click
2 complement(2187741..2189000)  PROPHAGE_Escher_CFT073: transposase; PSPPH_1887; phage(gi26246249)  6e-103  Click
3 2190515..2190874  hypothetical protein; PSPPH_1888  N/A  Click
4 2191411..2191725  PHAGE_Entero_SfV: holin; PSPPH_1889; phage(gi19549036)  2e-14  Click
5 2191722..2192108  PHAGE_Salmon_RE_2010: lysozyme subunit B; PSPPH_1890; phage(gi418489705)  9e-05  Click
6 2192457..2193116  hypothetical protein; PSPPH_1891  N/A  Click
7 2193056..2193754  PHAGE_Salmon_RE_2010: gene D protein; PSPPH_1892; phage(gi418489726)  2e-17  Click
8 2193799..2194344  PHAGE_Salmon_PVP_SE1: lysozyme; PSPPH_1893; phage(gi363539668)  4e-50  Click
9 2194525..2195319  PHAGE_Burkho_KS9: DNA adenine methylase gp25; PSPPH_1894; phage(gi255033757)  9e-99  Click
10 2195444..2195803  RulB domain-containing protein; PSPPH_1895  N/A  Click
11 2196206..2200072  PHAGE_Prochl_SSM4: YadA domain-containing structural protein; PSPPH_1896; phage(gi61806289)  2e-09  Click
12 complement(2200419..2201546)  PHAGE_Burkho_DC1: integrase; PSPPH_1897; phage(gi401723020)  3e-102  Click
13 2208737..2208750  attR    GCCCGAACACAAAA  N/A  Click
Region 5, total : 11 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2495791..2495806  attL    CGAGTTGCAGGCCGGC  N/A  Click
2 complement(2498701..2499636)  PHAGE_Pectob_ZF40: putative integrase; PSPPH_2144; phage(gi422936668)  2e-05  Click
3 complement(2500080..2500718)  PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; PSPPH_2145; phage(gi428782758)  3e-40  Click
4 complement(2500778..2501089)  hypothetical protein; PSPPH_2146  N/A  Click
5 complement(2501091..2501681)  hypothetical protein; PSPPH_2147  N/A  Click
6 complement(2501681..2502199)  hypothetical protein; PSPPH_2148  N/A  Click
7 complement(2502610..2503011)  PHAGE_Pseudo_F10: Conserved hypothetical protein; putative transcriptional regulator, LuxR family; PSPPH_2149; phage(gi148912803)  8e-20  Click
8 2503232..2503648  PHAGE_Pseudo_phi297: hypothetical protein; PSPPH_2150; phage(gi374531269)  4e-10  Click
9 complement(2505417..2506277)  PHAGE_Pseudo_phi297: putative phage repressor; PSPPH_2151; phage(gi374531272)  5e-37  Click
10 2506776..2507567  PHAGE_Burkho_Bcep176: gp11; PSPPH_2152; phage(gi77864636)  9e-06  Click
11 2508072..2508530  PHAGE_Entero_HK225: tail assembly protein I; PSPPH_2153; phage(gi428782395)  1e-27  Click
12 2508586..2510475  PHAGE_Cronob_phiES15: putative host specificity protein; PSPPH_2154; phage(gi401817611)  3e-149  Click
13 2516079..2516094  attR    CGAGTTGCAGGCCGGC  N/A  Click
Region 6, total : 18 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2759433..2759446  attL    CGGCATCGCGCTGG  N/A  Click
2 complement(2771397..2772119)  PHAGE_Entero_mEp213: prophage repressor; PSPPH_2392; phage(gi428782641)  2e-35  Click
3 2773006..2773362  PHAGE_Aggreg_S1249: uncharacterized phage-encoded protein; PSPPH_2393; phage(gi273809589)  3e-15  Click
4 2773364..2774344  PHAGE_Pseudo_MP42: hypothetical protein; PSPPH_2394; phage(gi399528627)  5e-12  Click
5 2774341..2775060  PHAGE_Pseudo_F10: hypothetical protein PPF10_gp026; PSPPH_2395; phage(gi148912791)  7e-10  Click
6 2775121..2775654  PHAGE_Salmon_PVP_SE1: lysozyme; PSPPH_2396; phage(gi363539668)  6e-38  Click
7 2776064..2776579  PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; PSPPH_2397; phage(gi16765210)  8e-12  Click
8 2776592..2776804  hypothetical protein; PSPPH_2398  N/A  Click
9 2776801..2778045  PHAGE_Pseudo_EL: putative GDSL lipase family protein; PSPPH_2399; phage(gi82701090)  2e-13  Click
10 2778375..2778473  hypothetical protein; PSPPH_2400  N/A  Click
11 complement(2778554..2778639)  tRNA  N/A  Click
12 complement(2778807..2779877)  PHAGE_Acanth_mimivirus: DNA topoisomerase 1b; PSPPH_2402; phage(gi311977570)  2e-45  Click
13 complement(2779966..2781054)  PHAGE_Plankt_PaV_LD: ABC transporter; PSPPH_2403; phage(gi371496158)  2e-21  Click
14 complement(2781058..2781738)  molybdate ABC transporter permease; PSPPH_2404  N/A  Click
15 complement(2781739..2782506)  molybdenum ABC transporter periplasmic molybdate-binding protein; PSPPH_2405  N/A  Click
16 complement(2782608..2783687)  2-nitropropane dioxygenase family oxidoreductase; PSPPH_2406  N/A  Click
17 2783830..2784465  TetR family transcriptional regulator; PSPPH_2407  N/A  Click
18 2784516..2785499  zinc-binding oxidoreductase; PSPPH_2408  N/A  Click
19 complement(2785505..2785978)  hypothetical protein; PSPPH_2409  N/A  Click
20 2786213..2787178  PHAGE_Achole_L2: integrase; PSPPH_2410; phage(gi9626516)  6e-07  Click
21 2791641..2791654  attR    CGGCATCGCGCTGG  N/A  Click
Region 7, total : 6 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 3225924..3225935  attL    ACATTATGCGTA  N/A  Click
2 complement(3225970..3227286)  PHAGE_Pseudo_Pf1: hypothetical protein Pf1p07; PSPPH_2788; phage(gi9625373)  5e-98  Click
3 complement(3227655..3228959)  PHAGE_Pseudo_Pf1: hypothetical protein Pf1p05; PSPPH_2789; phage(gi9625371)  5e-32  Click
4 complement(3229542..3229829)  prophage PSPPH05, helix-destabilizing protein; PSPPH_2790  N/A  Click
5 complement(3230334..3231464)  PHAGE_Entero_If1: hypothetical protein If1p10; PSPPH_2791; phage(gi9630757)  1e-76  Click
6 3231624..3231971  PHAGE_Burkho_phiE255: gp46; PSPPH_2792; phage(gi134288790)  2e-07  Click
7 3232677..3232688  attR    ACATTATGCGTA  N/A  Click
8 3232787..3233995  prophage PSPPH05, site-specific recombinase phage integrase family protein; PSPPH_2793  N/A  Click
Region 8, total : 23 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 5619217..5619263  attL    CTTGTAATCAGTAGGTCCCGGGTTCGACTCCTGGTGCCGGCACCATA  N/A  Click
2 complement(5623649..5624179)  PHAGE_Haemop_HP2: orf34; PSPPH_4950; phage(gi17981850)  2e-18  Click
3 complement(5624176..5625102)  PHAGE_Haemop_HP2: orf33; PSPPH_4951; phage(gi17981849)  1e-06  Click
4 complement(5625099..5625536)  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp23; PSPPH_4952; phage(gi17313240)  1e-26  Click
5 complement(5625699..5628143)  PHAGE_Haemop_HP2: tail fibers; PSPPH_4953; phage(gi17981847)  2e-50  Click
6 complement(5628152..5628676)  PHAGE_Haemop_HP2: orf30; PSPPH_4954; phage(gi17981846)  2e-43  Click
7 complement(5628673..5629842)  PHAGE_Haemop_HP2: orf29; PSPPH_4955; phage(gi17981845)  7e-94  Click
8 complement(5629839..5630156)  PHAGE_Haemop_HP2: orf28; PSPPH_4956; phage(gi17981844)  1e-22  Click
9 complement(5630156..5632456)  PHAGE_Haemop_HP2: orf27; PSPPH_4957; phage(gi17981843)  6e-87  Click
10 complement(5632462..5632605)  hypothetical protein; PSPPH_4958  N/A  Click
11 complement(5632626..5632916)  PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_36; PSPPH_4959; phage(gi148727164)  4e-09  Click
12 complement(5632950..5633429)  PHAGE_Burkho_BcepIL02: Rz-like phage lysis protein; PSPPH_4960; phage(gi238801691)  1e-15  Click
13 complement(5633426..5633953)  PHAGE_Entero_RTP: putative endolysin; PSPPH_4961; phage(gi81343992)  9e-12  Click
14 complement(5634156..5634365)  PHAGE_Burkho_KS10: hypothetical protein KS10_gp07; PSPPH_4962; phage(gi198449269)  1e-05  Click
15 complement(5634365..5634817)  PHAGE_Haemop_HP2: tail tube; PSPPH_4963; phage(gi17981838)  1e-33  Click
16 complement(5634821..5635933)  PHAGE_Haemop_HP2: tail sheath; PSPPH_4964; phage(gi17981837)  1e-73  Click
17 complement(5635948..5636616)  PHAGE_Haemop_HP2: orf22; PSPPH_4965; phage(gi17981836)  6e-12  Click
18 complement(5636606..5637049)  PHAGE_Haemop_HP2: orf21; PSPPH_4966; phage(gi17981835)  2e-07  Click
19 complement(5637046..5637507)  PHAGE_Haemop_HP2: packaging protein; PSPPH_4967; phage(gi17981834)  3e-19  Click
20 complement(5638325..5639164)  PHAGE_Ralsto_phiRSA1: P2 family phage major capsid protein; PSPPH_4969; phage(gi145708082)  2e-62  Click
21 5639460..5639822  PHAGE_Vibrio_kappa: putative terminase ATPase subunit; PSPPH_4970; phage(gi165970256)  9e-34  Click
22 5639816..5640664  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp40; PSPPH_4971; phage(gi17313257)  1e-58  Click
23 5641076..5641309  hypothetical protein; PSPPH_4972  N/A  Click
24 5641595..5642743  PROPHAGE_Xantho_306: phage-related integrase; PSPPH_4973; phage(gi21243357)  1e-74  Click
25 5644904..5644950  attR    CTTGTAATCAGTAGGTCCCGGGTTCGACTCCTGGTGCCGGCACCATA  N/A  Click