Definition | Pseudomonas syringae pv. phaseolicola 1448A chromosome, complete genome. |
---|---|
Accession | NC_005773 |
Length | 5,928,787 |
Legend
Hits against Virus and prophage DB | |
Hits against Bacterial DB or GenBank file |
Region 1, total : 20 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 767035..767053 | attL TGGCGTTGGCGCGCCTGAC | N/A | Click |
2 | complement(770972..771238) | prophage PSPPH01 transcriptional regulator; PSPPH_0651 | N/A | Click |
3 | complement(771336..771584) | hypothetical protein; PSPPH_0652 | N/A | Click |
4 | complement(771739..772386) | PHAGE_Entero_ST64T: C2; PSPPH_0653; phage(gi24371557) | 8e-52 | Click |
5 | 772540..772983 | hypothetical protein; PSPPH_0654 | N/A | Click |
6 | 773453..774625 | prophage PSPPH01 cellulase; PSPPH_0655 | N/A | Click |
7 | 774748..775137 | PHAGE_Erwini_PEp14: holin; PSPPH_0656; phage(gi374531877) | 3e-07 | Click |
8 | 775118..775456 | PHAGE_Erwini_PEp14: hypothetical protein; PSPPH_0657; phage(gi374531878) | 4e-06 | Click |
9 | 775428..775847 | PHAGE_Entero_SfV: tail sheath protein; PSPPH_0658; phage(gi19549001) | 2e-22 | Click |
10 | 775908..776252 | PHAGE_Entero_SfV: hypothetical protein SfVp12; PSPPH_0659; phage(gi19549002) | 9e-18 | Click |
11 | 776249..776545 | PHAGE_Entero_SfV: hypothetical protein SfVp13; PSPPH_0660; phage(gi19549003) | 2e-14 | Click |
12 | 778810..780195 | PHAGE_Entero_SfV: tail/DNA circulation protein; PSPPH_0662; phage(gi19549005) | 1e-45 | Click |
13 | 780199..781326 | PHAGE_Entero_SfV: tail protein; PSPPH_0663; phage(gi19549006) | 5e-66 | Click |
14 | 781323..781418 | hypothetical protein; PSPPH_0664 | N/A | Click |
15 | 781547..782092 | PHAGE_Cronob_vB_CsaM_GAP31: lysozyme; PSPPH_0665; phage(gi414086784) | 3e-52 | Click |
16 | 782104..782598 | PHAGE_Burkho_DC1: Rz; PSPPH_0666; phage(gi401723083) | 2e-09 | Click |
17 | 782831..782849 | attR TGGCGTTGGCGCGCCTGAC | N/A | Click |
18 | 783191..784366 | PROPHAGE_Escher_CFT073: putative prophage integrase; PSPPH_0667; phage(gi26250313) | 7e-75 | Click |
19 | complement(784730..784930) | PHAGE_Stenot_S1: putative repressor protein; PSPPH_0668; phage(gi213163928) | 3e-08 | Click |
20 | complement(784927..785664) | PHAGE_Burkho_phiE125: putative PAPS reductase/sulfotransferase; PSPPH_0669; phage(gi17975219) | 3e-57 | Click |
21 | 785689..787278 | PHAGE_Haemop_SuMu: bacteriophage tail length determination protein; PSPPH_0670; phage(gi418489066) | 5e-13 | Click |
22 | 787275..788396 | PHAGE_Salmon_vB_SosS_Oslo: error-prone lesion bypass DNA polymerase V; PSPPH_0671; phage(gi399528790) | 7e-90 | Click |
Region 2, total : 19 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1540644..1540656 | attL AGCGCTTGCTGAC | N/A | Click |
2 | 1554911..1555420 | PHAGE_Gordon_GTE2: putative deaminase; PSPPH_1339; phage(gi338826893) | 9e-08 | Click |
3 | complement(1555417..1557096) | PHAGE_Entero_285P: gp16; PSPPH_1340; phage(gi326536141) | 3e-08 | Click |
4 | 1557076..1561017 | PHAGE_Macaci_4: BNRF1; PSPPH_1341; phage(gi51518016) | 9e-33 | Click |
5 | 1561023..1561334 | PHAGE_Megavi_lba: hypothetical protein; PSPPH_1342; phage(gi448826036) | 2e-16 | Click |
6 | complement(1561483..1562046) | hypothetical protein; PSPPH_1343 | N/A | Click |
7 | complement(1562110..1562661) | PHAGE_Burkho_Bcep1: gp18; PSPPH_1344; phage(gi38638625) | 3e-07 | Click |
8 | 1562812..1563408 | mutT/nudix family protein; PSPPH_1345 | N/A | Click |
9 | 1563500..1564024 | PHAGE_Bathyc_BpV1: hypothetical protein; PSPPH_1346; phage(gi313768028) | 1e-07 | Click |
10 | 1564024..1564242 | hypothetical protein; PSPPH_1347 | N/A | Click |
11 | 1564364..1564975 | hypothetical protein; PSPPH_1348 | N/A | Click |
12 | 1565079..1566260 | phosphoribosylglycinamide formyltransferase 2; PSPPH_1349 | N/A | Click |
13 | complement(1566317..1567810) | PHAGE_Burkho_phi1026b: gp59; PSPPH_1350; phage(gi38707949) | 3e-41 | Click |
14 | complement(1567777..1569024) | CBS domain-containing protein; PSPPH_1351 | N/A | Click |
15 | complement(1569037..1569891) | cytochrome C assembly family protein; PSPPH_1352 | N/A | Click |
16 | 1569934..1571439 | signal recognition particle protein; PSPPH_1353 | N/A | Click |
17 | 1571687..1571944 | 30S ribosomal protein S16; PSPPH_1354 | N/A | Click |
18 | 1571950..1572489 | 16S rRNA-processing protein RimM; PSPPH_1355 | N/A | Click |
19 | 1572495..1573247 | tRNA (guanine-N(1)-)-methyltransferase; PSPPH_1356 | N/A | Click |
20 | 1573292..1573642 | 50S ribosomal protein L19; PSPPH_1357 | N/A | Click |
21 | 1573745..1574641 | PHAGE_Thermu_45: XerD-like integrase; PSPPH_1358; phage(gi157265299) | 2e-15 | Click |
22 | 1579391..1579403 | attR AGCGCTTGCTGAC | N/A | Click |
Region 3, total : 7 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 2179696..2180799 | PROPHAGE_Xantho_33913: IS1480 transposase; PSPPH_1878; phage(gi21231089) | 6e-20 | Click |
2 | 2181745..2181951 | PHAGE_Entero_PsP3: gp8; PSPPH_1880; phage(gi41057360) | 4e-09 | Click |
3 | 2182028..2183068 | PHAGE_Entero_PsP3: gp26; PSPPH_1881; phage(gi41057378) | 1e-44 | Click |
4 | 2183107..2183652 | PHAGE_Salmon_PVP_SE1: lysozyme; PSPPH_1882; phage(gi363539668) | 2e-52 | Click |
5 | 2183856..2184650 | PHAGE_Burkho_KS9: DNA adenine methylase gp25; PSPPH_1883; phage(gi255033757) | 3e-100 | Click |
6 | 2185184..2185672 | hypothetical protein; PSPPH_1885 | N/A | Click |
7 | 2185682..2186659 | PHAGE_Vibrio_VP882: phage-related tail protein; PSPPH_1886; phage(gi126010872) | 3e-06 | Click |
Region 4, total : 11 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 2180924..2180937 | attL GCCCGAACACAAAA | N/A | Click |
2 | complement(2187741..2189000) | PROPHAGE_Escher_CFT073: transposase; PSPPH_1887; phage(gi26246249) | 6e-103 | Click |
3 | 2190515..2190874 | hypothetical protein; PSPPH_1888 | N/A | Click |
4 | 2191411..2191725 | PHAGE_Entero_SfV: holin; PSPPH_1889; phage(gi19549036) | 2e-14 | Click |
5 | 2191722..2192108 | PHAGE_Salmon_RE_2010: lysozyme subunit B; PSPPH_1890; phage(gi418489705) | 9e-05 | Click |
6 | 2192457..2193116 | hypothetical protein; PSPPH_1891 | N/A | Click |
7 | 2193056..2193754 | PHAGE_Salmon_RE_2010: gene D protein; PSPPH_1892; phage(gi418489726) | 2e-17 | Click |
8 | 2193799..2194344 | PHAGE_Salmon_PVP_SE1: lysozyme; PSPPH_1893; phage(gi363539668) | 4e-50 | Click |
9 | 2194525..2195319 | PHAGE_Burkho_KS9: DNA adenine methylase gp25; PSPPH_1894; phage(gi255033757) | 9e-99 | Click |
10 | 2195444..2195803 | RulB domain-containing protein; PSPPH_1895 | N/A | Click |
11 | 2196206..2200072 | PHAGE_Prochl_SSM4: YadA domain-containing structural protein; PSPPH_1896; phage(gi61806289) | 2e-09 | Click |
12 | complement(2200419..2201546) | PHAGE_Burkho_DC1: integrase; PSPPH_1897; phage(gi401723020) | 3e-102 | Click |
13 | 2208737..2208750 | attR GCCCGAACACAAAA | N/A | Click |
Region 5, total : 11 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 2495791..2495806 | attL CGAGTTGCAGGCCGGC | N/A | Click |
2 | complement(2498701..2499636) | PHAGE_Pectob_ZF40: putative integrase; PSPPH_2144; phage(gi422936668) | 2e-05 | Click |
3 | complement(2500080..2500718) | PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; PSPPH_2145; phage(gi428782758) | 3e-40 | Click |
4 | complement(2500778..2501089) | hypothetical protein; PSPPH_2146 | N/A | Click |
5 | complement(2501091..2501681) | hypothetical protein; PSPPH_2147 | N/A | Click |
6 | complement(2501681..2502199) | hypothetical protein; PSPPH_2148 | N/A | Click |
7 | complement(2502610..2503011) | PHAGE_Pseudo_F10: Conserved hypothetical protein; putative transcriptional regulator, LuxR family; PSPPH_2149; phage(gi148912803) | 8e-20 | Click |
8 | 2503232..2503648 | PHAGE_Pseudo_phi297: hypothetical protein; PSPPH_2150; phage(gi374531269) | 4e-10 | Click |
9 | complement(2505417..2506277) | PHAGE_Pseudo_phi297: putative phage repressor; PSPPH_2151; phage(gi374531272) | 5e-37 | Click |
10 | 2506776..2507567 | PHAGE_Burkho_Bcep176: gp11; PSPPH_2152; phage(gi77864636) | 9e-06 | Click |
11 | 2508072..2508530 | PHAGE_Entero_HK225: tail assembly protein I; PSPPH_2153; phage(gi428782395) | 1e-27 | Click |
12 | 2508586..2510475 | PHAGE_Cronob_phiES15: putative host specificity protein; PSPPH_2154; phage(gi401817611) | 3e-149 | Click |
13 | 2516079..2516094 | attR CGAGTTGCAGGCCGGC | N/A | Click |
Region 6, total : 18 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 2759433..2759446 | attL CGGCATCGCGCTGG | N/A | Click |
2 | complement(2771397..2772119) | PHAGE_Entero_mEp213: prophage repressor; PSPPH_2392; phage(gi428782641) | 2e-35 | Click |
3 | 2773006..2773362 | PHAGE_Aggreg_S1249: uncharacterized phage-encoded protein; PSPPH_2393; phage(gi273809589) | 3e-15 | Click |
4 | 2773364..2774344 | PHAGE_Pseudo_MP42: hypothetical protein; PSPPH_2394; phage(gi399528627) | 5e-12 | Click |
5 | 2774341..2775060 | PHAGE_Pseudo_F10: hypothetical protein PPF10_gp026; PSPPH_2395; phage(gi148912791) | 7e-10 | Click |
6 | 2775121..2775654 | PHAGE_Salmon_PVP_SE1: lysozyme; PSPPH_2396; phage(gi363539668) | 6e-38 | Click |
7 | 2776064..2776579 | PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; PSPPH_2397; phage(gi16765210) | 8e-12 | Click |
8 | 2776592..2776804 | hypothetical protein; PSPPH_2398 | N/A | Click |
9 | 2776801..2778045 | PHAGE_Pseudo_EL: putative GDSL lipase family protein; PSPPH_2399; phage(gi82701090) | 2e-13 | Click |
10 | 2778375..2778473 | hypothetical protein; PSPPH_2400 | N/A | Click |
11 | complement(2778554..2778639) | tRNA | N/A | Click |
12 | complement(2778807..2779877) | PHAGE_Acanth_mimivirus: DNA topoisomerase 1b; PSPPH_2402; phage(gi311977570) | 2e-45 | Click |
13 | complement(2779966..2781054) | PHAGE_Plankt_PaV_LD: ABC transporter; PSPPH_2403; phage(gi371496158) | 2e-21 | Click |
14 | complement(2781058..2781738) | molybdate ABC transporter permease; PSPPH_2404 | N/A | Click |
15 | complement(2781739..2782506) | molybdenum ABC transporter periplasmic molybdate-binding protein; PSPPH_2405 | N/A | Click |
16 | complement(2782608..2783687) | 2-nitropropane dioxygenase family oxidoreductase; PSPPH_2406 | N/A | Click |
17 | 2783830..2784465 | TetR family transcriptional regulator; PSPPH_2407 | N/A | Click |
18 | 2784516..2785499 | zinc-binding oxidoreductase; PSPPH_2408 | N/A | Click |
19 | complement(2785505..2785978) | hypothetical protein; PSPPH_2409 | N/A | Click |
20 | 2786213..2787178 | PHAGE_Achole_L2: integrase; PSPPH_2410; phage(gi9626516) | 6e-07 | Click |
21 | 2791641..2791654 | attR CGGCATCGCGCTGG | N/A | Click |
Region 7, total : 6 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 3225924..3225935 | attL ACATTATGCGTA | N/A | Click |
2 | complement(3225970..3227286) | PHAGE_Pseudo_Pf1: hypothetical protein Pf1p07; PSPPH_2788; phage(gi9625373) | 5e-98 | Click |
3 | complement(3227655..3228959) | PHAGE_Pseudo_Pf1: hypothetical protein Pf1p05; PSPPH_2789; phage(gi9625371) | 5e-32 | Click |
4 | complement(3229542..3229829) | prophage PSPPH05, helix-destabilizing protein; PSPPH_2790 | N/A | Click |
5 | complement(3230334..3231464) | PHAGE_Entero_If1: hypothetical protein If1p10; PSPPH_2791; phage(gi9630757) | 1e-76 | Click |
6 | 3231624..3231971 | PHAGE_Burkho_phiE255: gp46; PSPPH_2792; phage(gi134288790) | 2e-07 | Click |
7 | 3232677..3232688 | attR ACATTATGCGTA | N/A | Click |
8 | 3232787..3233995 | prophage PSPPH05, site-specific recombinase phage integrase family protein; PSPPH_2793 | N/A | Click |
Region 8, total : 23 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 5619217..5619263 | attL CTTGTAATCAGTAGGTCCCGGGTTCGACTCCTGGTGCCGGCACCATA | N/A | Click |
2 | complement(5623649..5624179) | PHAGE_Haemop_HP2: orf34; PSPPH_4950; phage(gi17981850) | 2e-18 | Click |
3 | complement(5624176..5625102) | PHAGE_Haemop_HP2: orf33; PSPPH_4951; phage(gi17981849) | 1e-06 | Click |
4 | complement(5625099..5625536) | PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp23; PSPPH_4952; phage(gi17313240) | 1e-26 | Click |
5 | complement(5625699..5628143) | PHAGE_Haemop_HP2: tail fibers; PSPPH_4953; phage(gi17981847) | 2e-50 | Click |
6 | complement(5628152..5628676) | PHAGE_Haemop_HP2: orf30; PSPPH_4954; phage(gi17981846) | 2e-43 | Click |
7 | complement(5628673..5629842) | PHAGE_Haemop_HP2: orf29; PSPPH_4955; phage(gi17981845) | 7e-94 | Click |
8 | complement(5629839..5630156) | PHAGE_Haemop_HP2: orf28; PSPPH_4956; phage(gi17981844) | 1e-22 | Click |
9 | complement(5630156..5632456) | PHAGE_Haemop_HP2: orf27; PSPPH_4957; phage(gi17981843) | 6e-87 | Click |
10 | complement(5632462..5632605) | hypothetical protein; PSPPH_4958 | N/A | Click |
11 | complement(5632626..5632916) | PHAGE_Aeromo_phiO18P: hypothetical protein phiO18_36; PSPPH_4959; phage(gi148727164) | 4e-09 | Click |
12 | complement(5632950..5633429) | PHAGE_Burkho_BcepIL02: Rz-like phage lysis protein; PSPPH_4960; phage(gi238801691) | 1e-15 | Click |
13 | complement(5633426..5633953) | PHAGE_Entero_RTP: putative endolysin; PSPPH_4961; phage(gi81343992) | 9e-12 | Click |
14 | complement(5634156..5634365) | PHAGE_Burkho_KS10: hypothetical protein KS10_gp07; PSPPH_4962; phage(gi198449269) | 1e-05 | Click |
15 | complement(5634365..5634817) | PHAGE_Haemop_HP2: tail tube; PSPPH_4963; phage(gi17981838) | 1e-33 | Click |
16 | complement(5634821..5635933) | PHAGE_Haemop_HP2: tail sheath; PSPPH_4964; phage(gi17981837) | 1e-73 | Click |
17 | complement(5635948..5636616) | PHAGE_Haemop_HP2: orf22; PSPPH_4965; phage(gi17981836) | 6e-12 | Click |
18 | complement(5636606..5637049) | PHAGE_Haemop_HP2: orf21; PSPPH_4966; phage(gi17981835) | 2e-07 | Click |
19 | complement(5637046..5637507) | PHAGE_Haemop_HP2: packaging protein; PSPPH_4967; phage(gi17981834) | 3e-19 | Click |
20 | complement(5638325..5639164) | PHAGE_Ralsto_phiRSA1: P2 family phage major capsid protein; PSPPH_4969; phage(gi145708082) | 2e-62 | Click |
21 | 5639460..5639822 | PHAGE_Vibrio_kappa: putative terminase ATPase subunit; PSPPH_4970; phage(gi165970256) | 9e-34 | Click |
22 | 5639816..5640664 | PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp40; PSPPH_4971; phage(gi17313257) | 1e-58 | Click |
23 | 5641076..5641309 | hypothetical protein; PSPPH_4972 | N/A | Click |
24 | 5641595..5642743 | PROPHAGE_Xantho_306: phage-related integrase; PSPPH_4973; phage(gi21243357) | 1e-74 | Click |
25 | 5644904..5644950 | attR CTTGTAATCAGTAGGTCCCGGGTTCGACTCCTGGTGCCGGCACCATA | N/A | Click |