Definition Shigella flexneri 2a str. 2457T, complete genome.
Accession NC_004741
Length 4,599,354
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 26 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 234959..235369  PROPHAGE_Escher_CFT073: transposase insC; S0220; phage(gi26249447)  1e-52  Click
2 235327..236232  PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; S0221; phage(gi24111655)  6e-179  Click
3 236654..236956  PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; S0223; phage(gi24373865)  2e-09  Click
4 236983..237822  PHAGE_Entero_Sf6: putative transposase OrfB; S0224; phage(gi41057343)  2e-169  Click
5 complement(238511..238780)  PHAGE_Entero_mEp460: endolysin; S0229; phage(gi428782372)  2e-50  Click
6 complement(239101..239415)  PHAGE_Entero_mEp460: hypothetical protein; S0230; phage(gi428782371)  5e-53  Click
7 complement(239420..239635)  PHAGE_Escher_P13374: lysis protein, holin; S0231; phage(gi410491645)  2e-26  Click
8 239992..240366  hypothetical protein; S0232  N/A  Click
9 complement(240390..240797)  hypothetical protein; S0233  N/A  Click
10 complement(240794..241846)  PHAGE_Entero_Sf6: putative transposase OrfB; S0235; phage(gi41057343)  0.0  Click
11 complement(240794..241633)  PHAGE_Entero_Sf6: putative transposase OrfB; S0234; phage(gi41057343)  8e-170  Click
12 242170..242730  PHAGE_Entero_IME10: terminase large subunit; S0236; phage(gi422934280)  9e-111  Click
13 242699..243073  PHAGE_Entero_IME10: terminase large subunit; S0237; phage(gi422934280)  1e-64  Click
14 243074..245239  PHAGE_Entero_IME10: portal protein; S0238; phage(gi422934281)  0.0  Click
15 245253..246164  PHAGE_Entero_IME10: scaffolding protein; S0239; phage(gi422934282)  4e-168  Click
16 246164..247459  PHAGE_Entero_IME10: coat protein; S0240; phage(gi422934283)  0.0  Click
17 247504..247734  PHAGE_Salmon_SPN9CC: hypothetical protein; S0241; phage(gi389060541)  3e-05  Click
18 247712..248212  PHAGE_Entero_IME10: DNA stabilization protein; S0242; phage(gi422934284)  8e-94  Click
19 248212..249630  PHAGE_Entero_IME10: DNA stabilization protein; S0243; phage(gi422934285)  0.0  Click
20 249630..250478  PHAGE_Entero_P22: head completion protein; S0244; phage(gi51236728)  1e-38  Click
21 250478..250933  PHAGE_Entero_IME10: head assembly protein; S0245; phage(gi422934287)  6e-87  Click
22 250936..251628  PHAGE_Entero_IME10: DNA transfer protein; S0246; phage(gi422934288)  4e-127  Click
23 251638..252969  PHAGE_Entero_IME10: gp20; S0247; phage(gi422934289)  0.0  Click
24 252970..254700  PHAGE_Entero_P22: injection protein; S0248; phage(gi51236731)  4e-58  Click
25 254826..255152  PHAGE_Entero_4795: putative transposase OrfA protein of IS629; S0249; phage(gi157166066)  2e-56  Click
26 255387..256034  PROPHAGE_Escher_CFT073: transposase IS629; S0250; phage(gi26250986)  3e-119  Click
Region 2, total : 22 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 309135..309146  attL    CATCCGGCAATA  N/A  Click
2 310576..311079  PROPHAGE_Escher_MG1655: IS1 transposase B; S0312; phage(gi16131317)  7e-86  Click
3 311270..312373  gamma-glutamyl kinase; S0313  N/A  Click
4 312385..313638  gamma-glutamyl phosphate reductase; S0314  N/A  Click
5 313753..313828  tRNA  N/A  Click
6 complement(313843..315006)  PHAGE_Entero_SfV: integrase; S0316; phage(gi19549014)  0.0  Click
7 315192..315494  PROPHAGE_Xantho_33913: ISxac3 transposase; S0317; phage(gi21231087)  1e-09  Click
8 315635..316348  PROPHAGE_Escher_CFT073: transposase insF; S0318; phage(gi26249410)  3e-136  Click
9 316401..317051  PHAGE_Entero_SfV: hypothetical protein SfVp21; S0319; phage(gi19548989)  3e-116  Click
10 316960..317421  PHAGE_Entero_SfV: tail fibre assembly protein; S4801; phage(gi19549010)  1e-71  Click
11 complement(318229..319278)  hypothetical protein; S4802  N/A  Click
12 319374..319386  attL    TAATTTATTATTT  N/A  Click
13 319729..320919  PROPHAGE_Shewan_MR-1: ISSod3, transposase; S4808; phage(gi24375070)  2e-50  Click
14 complement(321309..322769)  PHAGE_Entero_phiEf11: putative membrane protein; S4803; phage(gi282598720)  7e-17  Click
15 complement(322766..323695)  PHAGE_Entero_SfV: bactoprenol glucosyltransferase; S0320; phage(gi19549012)  3e-171  Click
16 complement(323692..324054)  PHAGE_Entero_SfV: putative flippase; S0321; phage(gi19549013)  1e-63  Click
17 complement(324316..324609)  PHAGE_Escher_HK75: phage integrase family protein; S0322; phage(gi356870702)  5e-52  Click
18 324675..324718  attL    TGAGGTGTACTGGCAATAGCGGACACTACCATTTGTTCTTTTTT  N/A  Click
19 complement(324718..325431)  PROPHAGE_Escher_CFT073: transposase insF; S0323; phage(gi26249410)  3e-136  Click
20 complement(325572..325874)  PROPHAGE_Xantho_33913: ISxac3 transposase; S0324; phage(gi21231087)  1e-09  Click
21 326060..327223  PHAGE_Entero_SfV: integrase; S0325; phage(gi19549014)  0.0  Click
22 327572..328744  PHAGE_Escher_TL_2011b: hypothetical protein; S4804; phage(gi418487678)  6e-13  Click
23 329506..329549  attR    TGAGGTGTACTGGCAATAGCGGACACTACCATTTGTTCTTTTTT  N/A  Click
24 complement(329548..329988)  PROPHAGE_Escher_CFT073: transposase insF; S0326; phage(gi26249410)  3e-82  Click
25 complement(330729..331349)  PROPHAGE_Escher_CFT073: transposase IS629; S0327; phage(gi26250986)  9e-116  Click
26 complement(331711..331929)  PHAGE_Entero_4795: putative transposase OrfA protein of IS629; S0328; phage(gi157166066)  1e-35  Click
27 332080..333195  PHAGE_Pseudo_MP1412: diguanylate-cyclase GGDEF domain; S0329; phage(gi399529005)  9e-05  Click
28 334603..334615  attR    TAATTTATTATTT  N/A  Click
29 339909..339920  attR    CATCCGGCAATA  N/A  Click
Region 3, total : 67 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(692891..693400)  PHAGE_Pseudo_MP22: transposase A; S0684; phage(gi157834977)  2e-06  Click
2 693963..695417  PHAGE_Entero_Mu: transposase; S0685; phage(gi9633496)  0.0  Click
3 695479..695781  PROPHAGE_Xantho_33913: ISxac3 transposase; S0686; phage(gi21231087)  1e-09  Click
4 695922..696635  PROPHAGE_Escher_CFT073: transposase insF; S0687; phage(gi26249410)  2e-134  Click
5 complement(696632..696877)  hypothetical protein; S0688  N/A  Click
6 complement(696919..697860)  PHAGE_Vibrio_CP_T1: putative major capsid protein; S0689; phage(gi418489228)  1e-15  Click
7 complement(697872..697973)  hypothetical protein; S0690  N/A  Click
8 complement(698005..698361)  putative bacteriophage protein; S0691  N/A  Click
9 complement(698365..699585)  PHAGE_Pectob_ZF40: putative head protein; S0692; phage(gi422936684)  4e-18  Click
10 complement(699589..700047)  PROPHAGE_Deinoc_R1: head morphogenesis protein, putative; S0693; phage(gi15807765)  3e-13  Click
11 complement(700223..701689)  PHAGE_Vibrio_CP_T1: putative portal protein; S0694; phage(gi418489212)  1e-40  Click
12 complement(701689..701922)  PHAGE_Edward_MSW_3: putative terminase, large subunit; S0695; phage(gi448261027)  3e-13  Click
13 complement(701910..702449)  PHAGE_Psychr_pOW20_A: phage terminase large subunit; S0696; phage(gi472339822)  5e-44  Click
14 complement(702434..703339)  PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; S0697; phage(gi24111655)  6e-179  Click
15 complement(703297..703662)  PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; S0698; phage(gi17546153)  1e-45  Click
16 complement(703738..704361)  PHAGE_Psychr_pOW20_A: phage terminase large subunit; S0699; phage(gi472339822)  2e-80  Click
17 complement(704372..705136)  PHAGE_Escher_TL_2011c: putative terminase small subunit; S0700; phage(gi418487072)  6e-17  Click
18 complement(705206..705832)  PHAGE_Entero_Sf6: putative transposase OrfB; S0701; phage(gi41057343)  2e-126  Click
19 complement(705829..706029)  IS911 orfB; S0702  N/A  Click
20 complement(706072..706374)  PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; S0703; phage(gi24373865)  2e-09  Click
21 706519..706692  PHAGE_Entero_mEp460: Rz lysis protein; S0704; phage(gi428782373)  4e-22  Click
22 707502..707804  PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; S0705; phage(gi24373865)  2e-09  Click
23 707847..708047  IS911 orfB; S0706  N/A  Click
24 708044..708202  PHAGE_Entero_Sf6: putative transposase OrfB; S0707; phage(gi41057343)  2e-20  Click
25 708293..708667  PHAGE_Entero_Sf6: putative transposase OrfB; S0708; phage(gi41057343)  6e-73  Click
26 708696..709118  putative bacteriophage protein; S0709  N/A  Click
27 709308..709384  tRNA  N/A  Click
28 709386..709462  tRNA  N/A  Click
29 709465..709539  tRNA  N/A  Click
30 709543..709617  tRNA  N/A  Click
31 710297..710389  PHAGE_Stx2_c_II: holin; S0714; phage(gi302393164)  2e-06  Click
32 complement(710430..711116)  PROPHAGE_Escher_CFT073: transposase insF; S0715; phage(gi26249410)  5e-127  Click
33 complement(711257..711559)  PROPHAGE_Xantho_33913: ISxac3 transposase; S0716; phage(gi21231087)  1e-09  Click
34 711835..713694  PHAGE_Entero_Min27: putative replication protein P; S0718; phage(gi170783639)  0.0  Click
35 complement(713669..714295)  PHAGE_Entero_Sf6: putative transposase OrfB; S0719; phage(gi41057343)  2e-126  Click
36 complement(714292..714492)  IS911 orfB; S0720  N/A  Click
37 complement(714535..714837)  PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; S0721; phage(gi24373865)  2e-09  Click
38 714930..715808  PHAGE_Entero_phiP27: putative replication protein DnaC; S0722; phage(gi18249882)  2e-140  Click
39 715805..717196  PHAGE_Entero_phiP27: putative helicase; S0723; phage(gi18249883)  0.0  Click
40 717193..717450  PHAGE_Entero_phiP27: hypothetical protein P27p20; S0724; phage(gi18249884)  1e-36  Click
41 717545..717745  PHAGE_Escher_P13374: hypothetical protein; S0725; phage(gi410491635)  2e-20  Click
42 717738..718118  PHAGE_Entero_2008: antitermination protein Q; S0726; phage(gi209427762)  2e-62  Click
43 718318..718394  tRNA  N/A  Click
44 718396..718472  tRNA  N/A  Click
45 718475..718550  tRNA  N/A  Click
46 718554..718628  tRNA  N/A  Click
47 718921..719136  PHAGE_Escher_P13374: lysis protein, holin; S0731; phage(gi410491645)  4e-27  Click
48 719140..719769  PHAGE_Stx2_c_86: hypothetical protein Stx2-86_gp05; S0732; phage(gi116221997)  2e-32  Click
49 719835..720368  PHAGE_Entero_mEp460: endolysin; S0733; phage(gi428782372)  2e-101  Click
50 720365..720769  PHAGE_Entero_HK620: endopeptidase; S0734; phage(gi13559860)  2e-68  Click
51 720831..721133  PROPHAGE_Xantho_33913: ISxac3 transposase; S0735; phage(gi21231087)  1e-09  Click
52 721274..721987  PROPHAGE_Escher_CFT073: transposase insF; S0736; phage(gi26249410)  3e-135  Click
53 722310..724220  PHAGE_Gifsy_1: DNA packaging protein; large terminase subunit; Lambda gpA homolog; terminase; phage large subunit; S0737(gi169257235)  0.0  Click
54 724221..724424  PHAGE_Gifsy_1: bacteriophage head-to-tail joining protein; adapter between portal and gpFII; Lambda gpW homolog; S0738; phage(gi169257234)  8e-14  Click
55 724421..725476  PHAGE_Gifsy_1: bacteriophage portal protein; Lambda gpB homolog; S0739; phage(gi169257233)  5e-157  Click
56 725391..726014  PHAGE_Gifsy_1: bacteriophage portal protein; Lambda gpB homolog; S0740; phage(gi169257233)  4e-94  Click
57 726004..727509  PHAGE_Gifsy_1: bacteriophage prohead protease; Lambda gpC homolog; S0741; phage(gi169257232)  8e-172  Click
58 727546..727893  PHAGE_Gifsy_1: bacteriophage head decoration protein; Lambda gpD homolog; S0742; phage(gi169257231)  3e-42  Click
59 727951..728979  PHAGE_Gifsy_1: bacteriophage major capsid protein; Lambda gpE homolog; S0743; phage(gi169257230)  8e-173  Click
60 729031..729417  PHAGE_Gifsy_1: bacteriophage accessory DNA packaging protein; Lambda FI homolog; S0744; phage(gi169257229)  3e-13  Click
61 729429..729806  PHAGE_Gifsy_1: bacteriophage minor capsid protein; forms tail attachment site on head; Lambda FII homolog; S0745; phage(gi169257228)  2e-27  Click
62 729793..730377  PHAGE_Gifsy_1: bacteriophage head-tail assembly protein; Lambda gpZ homolog; S0746; phage(gi169257227)  7e-78  Click
63 730374..730775  PHAGE_Gifsy_1: bacteriophage tail shaft stabilization protein; Lambda gpU homolog; S0747; phage(gi169257225)  2e-51  Click
64 730786..731526  PHAGE_Gifsy_1: bacteriophage major tail subunit; Lambda gpV homolog; S0748; phage(gi169257224)  4e-105  Click
65 731585..731971  PHAGE_Gifsy_1: bacteriophage tail assembly chaperone; Lambda gpG homolog; S0749; phage(gi169257223)  3e-34  Click
66 732034..732309  PHAGE_Gifsy_1: part of bacteriophage tail assembly chaperone gpG by translational frameshifting; Lambda gpT homolog; S0750; phage(gi169257222)  1e-24  Click
67 732281..735322  PHAGE_Gifsy_1: bacteriophage tail tape measure protein; minor tail protein; Lambda gpH homolog; S0751; phage(gi169257221)  0.0  Click
68 735322..735651  PHAGE_Gifsy_1: bacteriophage tail tip assembly protein; Lambda gpM homolog; S0752; phage(gi169257220)  2e-45  Click
69 735651..736349  PHAGE_Entero_HK630: minor tail protein L; S0753; phage(gi428782805)  3e-122  Click
70 736498..737097  PHAGE_Entero_mEp460: tail fiber component; S0754; phage(gi428782332)  6e-120  Click
71 737094..737636  PHAGE_Entero_mEp460: tail assembly protein; S0755; phage(gi428782333)  1e-79  Click
72 737697..741176  PHAGE_Entero_cdtI: putative tail tip assembly protein; S0756; phage(gi148609400)  0.0  Click
73 741244..741843  PHAGE_Entero_4795: outer membrane protein Lom precursor; S0757; phage(gi157166058)  3e-106  Click
74 741907..742968  PHAGE_Entero_phiP27: putative tail fiber protein; S0758; phage(gi18249920)  2e-65  Click
75 743269..743892  PHAGE_Entero_phiP27: hypothetical protein P27p57; S0759; phage(gi18249921)  2e-78  Click
Region 4, total : 29 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 893482..894156  PHAGE_Stx2_c_1717: truncated transposase; S0899; phage(gi209447151)  5e-09  Click
2 894153..894503  PHAGE_Stx2_c_1717: transposase; S0900; phage(gi209447152)  5e-28  Click
3 894500..896101  PHAGE_Stx2_c_1717: transposase; S0901; phage(gi209447153)  2e-160  Click
4 complement(897507..897809)  PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; S0905; phage(gi24373865)  2e-09  Click
5 complement(897790..897996)  putative bacteriophage protein; S0906  N/A  Click
6 complement(897993..898283)  PHAGE_Entero_mEp237: hypothetical protein; S0907; phage(gi435439317)  4e-24  Click
7 complement(898283..898414)  PHAGE_Entero_mEp237: hypothetical protein; S0908; phage(gi435439315)  8e-10  Click
8 898581..898883  PROPHAGE_Xantho_33913: ISxac3 transposase; S0909; phage(gi21231087)  1e-09  Click
9 899024..899737  PROPHAGE_Escher_CFT073: transposase insF; S0910; phage(gi26249410)  8e-135  Click
10 complement(899777..900148)  PHAGE_Entero_mEp237: hypothetical protein; S0911; phage(gi435439315)  9e-29  Click
11 complement(900724..900822)  PHAGE_Stx2_c_II: putative host killer protein; S0912; phage(gi302393105)  2e-10  Click
12 complement(901106..901672)  hypothetical protein; S0913  N/A  Click
13 complement(902354..902776)  putative bacteriophage protein; S0914  N/A  Click
14 complement(903683..904321)  PHAGE_Escher_TL_2011b: hypothetical protein; S0917; phage(gi418487646)  5e-45  Click
15 complement(904399..904821)  PHAGE_Entero_mEp237: CII protein; S0918; phage(gi435439306)  4e-08  Click
16 complement(904805..905032)  PHAGE_Pectob_ZF40: putative cro anti-repressor; S0919; phage(gi422936651)  1e-09  Click
17 905720..905875  PHAGE_Salico_CGphi29: hypothetical protein; S0920; phage(gi472340166)  6e-09  Click
18 905877..906080  PHAGE_Cronob_phiES15: hypothetical protein; S0921; phage(gi401817573)  1e-12  Click
19 complement(906322..907227)  PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; S0922; phage(gi24114950)  6e-179  Click
20 complement(907185..907550)  PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; S0923; phage(gi17546153)  1e-45  Click
21 908098..908637  PHAGE_Entero_mEp460: regulatory protein Rha; S0924; phage(gi428782357)  4e-31  Click
22 908598..908945  PHAGE_Escher_TL_2011c: phage regulatory protein, Rha family; S0925; phage(gi418487059)  5e-15  Click
23 909459..909761  PROPHAGE_Xantho_33913: ISxac3 transposase; S0927; phage(gi21231087)  2e-09  Click
24 909902..910615  PROPHAGE_Escher_CFT073: transposase insF; S0928; phage(gi26249410)  3e-135  Click
25 complement(910640..911284)  PHAGE_Entero_mEp237: exonuclease; S0929; phage(gi435439296)  2e-25  Click
26 complement(911628..912068)  PROPHAGE_Escher_CFT073: transposase insF; S0930; phage(gi26249410)  3e-81  Click
27 complement(912483..912785)  PROPHAGE_Xantho_33913: ISxac3 transposase; S0931; phage(gi21231087)  1e-09  Click
28 912851..913468  PHAGE_Entero_phiP27: hypothetical protein P27p57; S0932; phage(gi18249921)  1e-82  Click
29 complement(913648..915474)  PHAGE_Acanth_mimivirus: putative leucine-rich repeat protein; S0934; phage(gi311977765)  4e-09  Click
Region 5, total : 15 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1084465..1084544  attL    CTGACAGGTAAAGCCCTGTTTATGGCGCTCAGGAGCCAGCGCCCACCTGCCGGGCTAATCCACCACTCTGATCGAGGTTC  N/A  Click
2 1095591..1096931  PHAGE_Entero_01: Phage conserved protein; S4815; phage(gi38707840)  2e-51  Click
3 1096928..1097200  hypothetical protein; S4817  N/A  Click
4 complement(1097304..1097924)  PHAGE_Entero_4795: putative transposase OrfB protein of IS629; S1123; phage(gi157166067)  8e-115  Click
5 complement(1098187..1098513)  PHAGE_Entero_4795: putative transposase OrfA protein of IS629; S1124; phage(gi157166066)  2e-56  Click
6 1098945..1099247  PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; S1126; phage(gi24373865)  2e-09  Click
7 1099436..1100113  PHAGE_Entero_Sf6: putative transposase OrfB; S1127; phage(gi41057343)  4e-137  Click
8 complement(1100131..1100553)  PHAGE_Entero_01: Phage conserved protein; S1128; phage(gi38707841)  6e-54  Click
9 1100686..1101051  PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; S1129; phage(gi17546153)  1e-45  Click
10 1101009..1101914  PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; S1130; phage(gi24114950)  6e-179  Click
11 1102310..1102636  PHAGE_Entero_4795: putative transposase OrfA protein of IS629; S1131; phage(gi157166066)  2e-56  Click
12 1102872..1103519  PHAGE_Entero_4795: putative transposase OrfB protein of IS629; S1132; phage(gi157166067)  5e-120  Click
13 1103807..1104109  PROPHAGE_Xantho_33913: ISxac3 transposase; S1133; phage(gi21231087)  1e-09  Click
14 1104250..1104729  PROPHAGE_Escher_CFT073: transposase insF; S1134; phage(gi26249410)  5e-79  Click
15 1104601..1104680  attR    CTGACAGGTAAAGCCCTGTTTATGGCGCTCAGGAGCCAGCGCCCACCTGCCGGGCTAATCCACCACTCTGATCGAGGTTC  N/A  Click
16 1104738..1104962  PROPHAGE_Escher_CFT073: transposase insF; S1135; phage(gi26249410)  3e-38  Click
17 complement(1104987..1105919)  PHAGE_Bacill_WBeta: putative site-specific recombinase; S1136; phage(gi85701406)  1e-11  Click
Region 6, total : 15 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1177790..1177810  attL    CGGTGTAGTTAATGGTGTAGT  N/A  Click
2 1177837..1179066  PHAGE_Salmon_vB_SosS_Oslo: integrase; S1211; phage(gi399528791)  3e-59  Click
3 1180340..1180642  hypothetical protein; S1212  N/A  Click
4 1181307..1181606  hypothetical protein; S1214  N/A  Click
5 1181603..1183351  PHAGE_Entero_EFRM31: DNA primase; S1215; phage(gi327198106)  1e-13  Click
6 1183718..1183918  hypothetical protein; S1216  N/A  Click
7 1183915..1184220  hypothetical protein; S1217  N/A  Click
8 1184230..1184391  hypothetical protein; S1218  N/A  Click
9 1184533..1184757  hypothetical protein; S1219  N/A  Click
10 1186255..1186827  PHAGE_Entero_EFRM31: prohead protease; S1222; phage(gi327198114)  3e-28  Click
11 1186865..1187992  PHAGE_Yersin_PY54: portal protein; S1223; phage(gi33770511)  2e-40  Click
12 1188037..1188375  PHAGE_Entero_HK97: putative head-tail adaptor; S1224; phage(gi9634168)  2e-26  Click
13 1188372..1188668  PHAGE_Entero_SfV: hypothetical protein SfVp06; S1225; phage(gi19548996)  7e-08  Click
14 1188896..1189108  PHAGE_Xantho_Xop411: HNH endonuclease; S1226; phage(gi157325492)  7e-05  Click
15 1189345..1189656  PHAGE_Salmon_ST64B: terminase small subunit; S1227; phage(gi23505446)  8e-12  Click
16 1189823..1191301  PHAGE_Burkho_KS9: terminase gp2; S1228; phage(gi255033734)  5e-83  Click
17 1192292..1192312  attR    CGGTGTAGTTAATGGTGTAGT  N/A  Click
Region 7, total : 6 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1612576..1612851  PHAGE_Entero_P1: InsA; S1658; phage(gi46401643)  3e-47  Click
2 1612770..1613273  PROPHAGE_Escher_MG1655: IS1 transposase B; S1659; phage(gi16131317)  2e-84  Click
3 1613481..1614194  PROPHAGE_Escher_CFT073: transposase insF; S1660; phage(gi26249410)  3e-135  Click
4 complement(1614219..1614398)  PHAGE_Escher_TL_2011c: lysis protein S; S1661; phage(gi418487069)  2e-25  Click
5 complement(1614706..1614909)  PHAGE_Escher_TL_2011c: hypothetical protein; S4818; phage(gi418487095)  9e-13  Click
6 complement(1616401..1616477)  tRNA  N/A  Click
7 complement(1616579..1616654)  tRNA  N/A  Click
8 complement(1617635..1617991)  PHAGE_Escher_HK75: RusA-like protein; S1665; phage(gi356870726)  6e-36  Click
Region 8, total : 9 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1619869..1620024)  PHAGE_Stx2_c_II: putative host killer protein; S1668; phage(gi302393105)  3e-19  Click
2 complement(1620096..1620383)  hypothetical protein; S1669  N/A  Click
3 complement(1620383..1620622)  bifunctional antitoxin/transcriptional repressor RelB; S1670  N/A  Click
4 complement(1620682..1621308)  PHAGE_Entero_Sf6: putative transposase OrfB; S1671; phage(gi41057343)  2e-126  Click
5 complement(1621548..1621850)  PHAGE_Entero_Sf6: gene 56 protein; S1673; phage(gi41057344)  6e-50  Click
6 complement(1622201..1622914)  PROPHAGE_Escher_CFT073: transposase insF; S1675; phage(gi26249410)  8e-135  Click
7 complement(1623055..1623357)  PHAGE_Entero_Sf6: gene 56 protein; S1676; phage(gi41057344)  3e-09  Click
8 1624527..1625987  PHAGE_Microm_MpV1: hypothetical protein; S1678; phage(gi313768442)  2e-41  Click
9 complement(1626023..1626226)  PHAGE_Salmon_SSU5: putative selenium-binding protein YdfZ; S1679; phage(gi410491512)  1e-13  Click
Region 9, total : 43 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1872283..1872295  attL    AGGCTTTTTTATT  N/A  Click
2 complement(1881818..1883590)  PHAGE_Acanth_moumouvirus: asparaginyl t-RNA synthetase; S1942; phage(gi441432571)  3e-07  Click
3 1884346..1885542  PROPHAGE_Escher_CFT073: transposase; S1944; phage(gi26248352)  0.0  Click
4 1886271..1886519  PHAGE_Entero_mEp460: DinI-like protein; S1946; phage(gi428782337)  4e-41  Click
5 1887119..1888870  PHAGE_Gifsy_1: leucine-rich repeat protein; S1947; phage(gi169257209)  7e-10  Click
6 complement(1888871..1889050)  PHAGE_Entero_Mu: tail fiber assembly; S1948; phage(gi9633541)  5e-05  Click
7 complement(1889050..1889673)  PHAGE_Entero_phiP27: hypothetical protein P27p57; S1949; phage(gi18249921)  2e-78  Click
8 1890306..1890317  attL    GTGCCACTTCAA  N/A  Click
9 1891397..1891939  PHAGE_Entero_mEp460: regulatory protein Rha; S1950; phage(gi428782357)  6e-44  Click
10 1892281..1892691  PROPHAGE_Escher_CFT073: transposase insC; S1952; phage(gi26249447)  2e-51  Click
11 1892649..1893554  PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; S1953; phage(gi24114950)  6e-179  Click
12 1894097..1894372  hypothetical protein; S1954  N/A  Click
13 1894472..1895896  PHAGE_Gifsy_2: putatitive bacteriophage exodeoxyribonuclease VIII; S1955; phage(gi169257272)  2e-40  Click
14 1897139..1897459  PHAGE_Stx2_c_86: host-nuclease inhibitor protein Gam; S1957; phage(gi116222045)  5e-43  Click
15 1897519..1898562  PHAGE_Cronob_phiES15: hypothetical protein; S1958; phage(gi401817570)  2e-173  Click
16 1898637..1898963  PHAGE_Entero_4795: putative transposase OrfA protein of IS629; S1959; phage(gi157166066)  3e-57  Click
17 1899199..1899846  PROPHAGE_Escher_CFT073: transposase IS629; S1960; phage(gi26250986)  2e-120  Click
18 complement(1900250..1900753)  PROPHAGE_Escher_MG1655: IS1 transposase B; S1961; phage(gi16131317)  7e-86  Click
19 complement(1900672..1900947)  PHAGE_Entero_P1: InsA; S1962; phage(gi46401643)  3e-47  Click
20 1901037..1901642  PHAGE_Entero_4795: putative integrase; S1963; phage(gi157165986)  2e-56  Click
21 1902098..1902988  Iron transport protein; S1964  N/A  Click
22 1902988..1903815  PHAGE_Plankt_PaV_LD: ABC transporter; S1965; phage(gi371496158)  3e-13  Click
23 1903812..1904669  Iron transport protein; S1966  N/A  Click
24 1904666..1905523  Iron transport protein, inner membrane component; S1967  N/A  Click
25 complement(1905724..1906287)  PHAGE_Entero_phiP27: hypothetical protein P27p57; S1968; phage(gi18249921)  2e-82  Click
26 complement(1906298..1907566)  PHAGE_Entero_phiP27: putative tail fiber protein; S1969; phage(gi18249920)  3e-93  Click
27 complement(1907590..1908078)  PHAGE_Entero_phiP27: putative tail fiber assembly protein; S1970; phage(gi18249919)  3e-65  Click
28 complement(1908138..1908341)  PROPHAGE_Escher_Sakai: tail fiber; S1971; phage(gi15834243)  6e-15  Click
29 complement(1908558..1909271)  PROPHAGE_Escher_CFT073: transposase insF; S1972; phage(gi26249410)  8e-135  Click
30 complement(1909479..1909688)  PROPHAGE_Escher_MG1655: IS1 transposase B; S1973; phage(gi16131317)  2e-34  Click
31 complement(1909901..1910176)  PHAGE_Entero_P1: InsA; S1975; phage(gi46401643)  3e-47  Click
32 complement(1910765..1911391)  PHAGE_Entero_Sf6: putative transposase OrfB; S1978; phage(gi41057343)  2e-126  Click
33 complement(1911631..1911933)  PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; S1980; phage(gi24373865)  2e-09  Click
34 1911995..1912006  attR    GTGCCACTTCAA  N/A  Click
35 complement(1912634..1914238)  PROPHAGE_Escher_Sakai: putative integrase; S1981; phage(gi15834496)  8e-21  Click
36 complement(1914353..1914427)  tRNA  N/A  Click
37 complement(1914431..1914506)  tRNA  N/A  Click
38 complement(1914509..1914585)  tRNA  N/A  Click
39 complement(1914587..1914662)  tRNA  N/A  Click
40 complement(1914839..1915528)  PHAGE_Gifsy_1: bacteriophage antiterminator protein Q; S1986; phage(gi169257244)  3e-78  Click
41 complement(1915525..1915884)  PHAGE_Escher_HK75: RusA-like protein; S1987; phage(gi356870726)  2e-40  Click
42 1916531..1917244  PROPHAGE_Escher_CFT073: transposase insF; S1989; phage(gi26249410)  3e-136  Click
43 1917742..1918569  PHAGE_Entero_phiP27: putative serine protease; S1990; phage(gi18249869)  7e-150  Click
44 1918613..1919362  PHAGE_Entero_phiP27: hypothetical protein P27p14; S1991; phage(gi18249878)  2e-54  Click
45 1919359..1919928  PHAGE_Salmon_1: hypothetical protein STM0896.2n.Fels1; S1992; phage(gi169257162)  6e-25  Click
46 1920052..1920294  PHAGE_Entero_phiP27: hypothetical protein P27p03; S1994; phage(gi18249867)  1e-25  Click
47 1920298..1920444  PHAGE_Entero_4795: hypothetical protein PBV4795_ORF3; S1995; phage(gi157165988)  1e-21  Click
48 complement(1921491..1921793)  PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; S1998; phage(gi24373865)  2e-09  Click
49 1922426..1922821  hypothetical protein; S2000  N/A  Click
50 1922862..1923605  PHAGE_Synech_S_CRM01: methyltransferase domain-containing protein; S2001; phage(gi333798309)  1e-24  Click
51 1931999..1932011  attR    AGGCTTTTTTATT  N/A  Click
Region 10, total : 24 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2009447..2009458  attL    ATGCCTGCCAGT  N/A  Click
2 2018262..2018274  attL    ATGGCTTATGAAA  N/A  Click
3 complement(2021895..2022164)  PHAGE_Entero_HK630: tail fiber assembly protein; S2118; phage(gi428782810)  1e-21  Click
4 2023205..2024848  PHAGE_Ostreo_OlV1: hypothetical protein; S2119; phage(gi313843974)  1e-06  Click
5 complement(2025028..2025405)  PHAGE_Entero_phiP27: hypothetical protein P27p57; S2121; phage(gi18249921)  4e-51  Click
6 2026462..2026737  PHAGE_Entero_P1: InsA; S2122; phage(gi46401643)  3e-47  Click
7 2026656..2027159  PROPHAGE_Escher_MG1655: IS1 transposase B; S2123; phage(gi16131317)  6e-87  Click
8 complement(2027802..2029751)  PHAGE_Salmon_ST64B: tail protein; S2124; phage(gi23505460)  0.0  Click
9 complement(2029836..2030171)  PHAGE_Salmon_ST64B: hypothetical protein sb15; S2126; phage(gi23505501)  6e-36  Click
10 complement(2030171..2030527)  PHAGE_Salmon_ST64B: Tail tube protein; S2127; phage(gi23505459)  2e-51  Click
11 complement(2030527..2032023)  PHAGE_Salmon_ST64B: Tail Sheath protein; S2128; phage(gi23505458)  0.0  Click
12 complement(2032191..2032445)  PHAGE_Salmon_ST64B: hypothetical protein sb11; S2129; phage(gi23505456)  2e-30  Click
13 complement(2032575..2033288)  PROPHAGE_Escher_CFT073: transposase insF; S2130; phage(gi26249410)  3e-135  Click
14 complement(2033429..2033731)  PROPHAGE_Xantho_33913: ISxac3 transposase; S2131; phage(gi21231087)  1e-09  Click
15 complement(2034606..2034956)  PHAGE_Stx2_c_1717: transposase; S2133; phage(gi209447152)  5e-28  Click
16 complement(2034953..2035450)  PHAGE_Stx2_c_1717: truncated transposase; S2134; phage(gi209447151)  8e-09  Click
17 complement(2036237..2036308)  tRNA  N/A  Click
18 complement(2036312..2036387)  tRNA  N/A  Click
19 complement(2036390..2036466)  tRNA  N/A  Click
20 complement(2036468..2036543)  tRNA  N/A  Click
21 complement(2036742..2037425)  PHAGE_Gifsy_1: bacteriophage antiterminator protein Q; S2139; phage(gi169257244)  1e-81  Click
22 complement(2037422..2037787)  PHAGE_Escher_HK75: RusA-like protein; S2140; phage(gi356870726)  2e-39  Click
23 complement(2037788..2038774)  PHAGE_Salmon_ST64B: hypothetical protein sb47; S2142; phage(gi23505491)  8e-47  Click
24 2038773..2039252  hypothetical protein; S2141  N/A  Click
25 complement(2039294..2039506)  PHAGE_Stx2_c_II: putative host killer protein; S2143; phage(gi302393105)  1e-30  Click
26 complement(2040101..2040436)  hypothetical protein; S2144  N/A  Click
27 2040562..2040684  hypothetical protein; S2145  N/A  Click
28 2040864..2041709  PHAGE_Salmon_ST64B: Integrase protein; S2146; phage(gi23505472)  1e-97  Click
29 complement(2041762..2041851)  tRNA  N/A  Click
30 2041906..2042742  hypothetical protein; S2148  N/A  Click
31 2042776..2042788  attR    ATGGCTTATGAAA  N/A  Click
32 2042843..2042918  tRNA  N/A  Click
33 2043593..2044342  PROPHAGE_Escher_CFT073: prophage P4 integrase; S2152; phage(gi26248270)  2e-146  Click
34 2054672..2054683  attR    ATGCCTGCCAGT  N/A  Click
Region 11, total : 9 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(2201408..2201911)  PROPHAGE_Escher_MG1655: IS1 transposase B; S2317; phage(gi16131317)  2e-85  Click
2 complement(2201830..2202105)  PHAGE_Entero_P1: InsA; S2318; phage(gi46401643)  3e-47  Click
3 2202196..2202657  hypothetical protein; S2319  N/A  Click
4 complement(2202878..2203381)  PROPHAGE_Escher_MG1655: IS1 transposase B; S2321; phage(gi16131317)  2e-85  Click
5 complement(2203300..2203575)  PHAGE_Entero_P1: InsA; S2322; phage(gi46401643)  2e-46  Click
6 complement(2203991..2204710)  putative two-component response-regulatory protein YehT; S2324  N/A  Click
7 complement(2204707..2206392)  PHAGE_Entero_2008: putative 2-component sensor protein YehU; S2325; phage(gi209427798)  0.0  Click
8 2208343..2208591  PHAGE_Entero_2008: putative DNA damage-inducible protein; S2328; phage(gi209427797)  4e-41  Click
9 complement(2208707..2208976)  PHAGE_Entero_HK630: tail fiber assembly protein; S2329; phage(gi428782810)  1e-21  Click
Region 12, total : 12 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(2211660..2212205)  PHAGE_Entero_phiP27: hypothetical protein P27p57; S2331; phage(gi18249921)  1e-53  Click
2 complement(2212250..2213584)  PHAGE_Entero_phiP27: putative tail fiber protein; S2332; phage(gi18249920)  5e-85  Click
3 complement(2213709..2214197)  PHAGE_Entero_phiP27: putative tail fiber assembly protein; S2333; phage(gi18249919)  3e-65  Click
4 complement(2214257..2214367)  PHAGE_Cronob_CR3: putative tail fiber protein 1; S2334; phage(gi389059890)  2e-06  Click
5 2214712..2214987  PHAGE_Entero_P1: InsA; S2335; phage(gi46401643)  3e-47  Click
6 2214906..2215409  PROPHAGE_Escher_MG1655: IS1 transposase B; S2336; phage(gi16131317)  6e-87  Click
7 2216108..2216434  PHAGE_Entero_4795: putative transposase OrfA protein of IS629; S2337; phage(gi157166066)  1e-55  Click
8 2216670..2217317  PROPHAGE_Escher_CFT073: transposase IS629; S2338; phage(gi26250986)  1e-119  Click
9 complement(2217368..2217682)  hypothetical protein; S2340  N/A  Click
10 2217875..2217982  hypothetical protein; S2341  N/A  Click
11 complement(2217963..2218694)  putative transport system permease protein; S2342  N/A  Click
12 complement(2218699..2219625)  PHAGE_Plankt_PaV_LD: ABC transporter; S2343; phage(gi371496158)  1e-24  Click
Region 13, total : 17 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2674398..2675816  PHAGE_Yersin_12: internal virion protein D; S2777; phage(gi9634042)  9e-08  Click
2 complement(2675813..2676349)  PHAGE_Microm_MpV1: hypothetical protein; S2778; phage(gi313768407)  1e-05  Click
3 complement(2676374..2677009)  hypothetical protein; S2779  N/A  Click
4 2677218..2678066  putative DNA-binding transcriptional regulator; S2780  N/A  Click
5 complement(2678519..2678959)  PHAGE_Entero_2: DNA-invertase; S2781; phage(gi169936026)  1e-73  Click
6 2679457..2681283  PHAGE_Acanth_mimivirus: putative leucine-rich repeat protein; S2782; phage(gi311977765)  4e-09  Click
7 complement(2681284..2681829)  PHAGE_Entero_phiP27: hypothetical protein P27p57; S2783; phage(gi18249921)  1e-53  Click
8 complement(2681874..2683163)  PHAGE_Entero_phiP27: putative tail fiber protein; S2784; phage(gi18249920)  5e-93  Click
9 complement(2683187..2683675)  PHAGE_Entero_phiP27: putative tail fiber assembly protein; S2785; phage(gi18249919)  3e-65  Click
10 complement(2683735..2683845)  PHAGE_Cronob_CR3: putative tail fiber protein 1; S2786; phage(gi389059890)  2e-06  Click
11 2684317..2684682  PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; S2787; phage(gi17546153)  2e-45  Click
12 2684640..2685545  PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; S2788; phage(gi24114950)  6e-179  Click
13 complement(2685470..2686456)  PHAGE_Entero_phiP27: putative tail fiber protein; S2789; phage(gi18249918)  6e-68  Click
14 complement(2686443..2687048)  PHAGE_Aeromo_vB_AsaM_56: hypothetical protein; S2790; phage(gi422937564)  1e-32  Click
15 complement(2687050..2687517)  PHAGE_Acinet_AP22: putative baseplate J-like protein; S2791; phage(gi388570818)  3e-10  Click
16 2687812..2688114  PROPHAGE_Xantho_33913: ISxac3 transposase; S2793; phage(gi21231087)  1e-09  Click
17 2688255..2688968  PROPHAGE_Escher_CFT073: transposase insF; S2794; phage(gi26249410)  1e-135  Click
Region 14, total : 9 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(3649722..3650666)  PHAGE_Ostreo_OlV5: 6-phosphofructokinase; S3753; phage(gi472341206)  1e-14  Click
2 complement(3650865..3651767)  ferrous iron efflux protein F; S3754  N/A  Click
3 complement(3651915..3652415)  periplasmic repressor CpxP; S3755  N/A  Click
4 3652565..3653263  PHAGE_Feldma_virus: putative sensor histidine kinase; S3757; phage(gi197322366)  4e-09  Click
5 3653260..3654633  PHAGE_Feldma_virus: putative hybrid sensor histdine kinase; S3758; phage(gi197322490)  1e-08  Click
6 complement(3654739..3655413)  hypothetical protein; S3759  N/A  Click
7 3655640..3656005  PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; S3760; phage(gi17546153)  1e-45  Click
8 3655963..3656868  PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; S3761; phage(gi24113121)  6e-179  Click
9 complement(3656898..3657881)  PHAGE_Strept_Sfi11: putative minor tail protein; S3762; phage(gi9635024)  3e-06  Click