| Definition | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. |
|---|---|
| Accession | NC_004578 |
| Length | 6,397,126 |
Legend
| Hits against Virus and prophage DB | |
| Hits against Bacterial DB or GenBank file |
Region 1, total : 17 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(628136..628783) | PHAGE_Entero_ST64T: C2; PSPTO_0571; phage(gi24371557) | 1e-53 | Click |
| 2 | 629847..630677 | bacteriocin; PSPTO_0572 | N/A | Click |
| 3 | 631257..631727 | PHAGE_Erwini_PEp14: holin; PSPTO_0573; phage(gi374531877) | 4e-07 | Click |
| 4 | 631705..632046 | PHAGE_Erwini_PEp14: hypothetical protein; PSPTO_0574; phage(gi374531878) | 5e-06 | Click |
| 5 | 632092..632682 | PHAGE_Entero_SfV: hypothetical protein SfVp09; PSPTO_0575; phage(gi19548999) | 4e-18 | Click |
| 6 | 632679..632867 | PHAGE_Entero_SfV: hypothetical protein SfVp10; PSPTO_0576; phage(gi19549000) | 1e-07 | Click |
| 7 | 632886..634382 | PHAGE_Entero_SfV: tail sheath protein; PSPTO_0577; phage(gi19549001) | 7e-147 | Click |
| 8 | 634443..634790 | PHAGE_Entero_SfV: hypothetical protein SfVp12; PSPTO_0578; phage(gi19549002) | 4e-17 | Click |
| 9 | 634787..635083 | PHAGE_Entero_SfV: hypothetical protein SfVp13; PSPTO_0579; phage(gi19549003) | 5e-14 | Click |
| 10 | 635171..635182 | attL TCTTGCAGGCGC | N/A | Click |
| 11 | 635214..637358 | PHAGE_Entero_SfV: tail protein; PSPTO_0580; phage(gi19549004) | 9e-40 | Click |
| 12 | 637355..639178 | PHAGE_Entero_SfV: tail/DNA circulation protein; PSPTO_0581; phage(gi19549005) | 3e-29 | Click |
| 13 | 639401..640042 | hypothetical protein; PSPTO_0582 | N/A | Click |
| 14 | complement(640284..640973) | hypothetical protein; PSPTO_0583 | N/A | Click |
| 15 | complement(641322..642014) | PHAGE_Vibrio_KVP40: Sir2/CobB protein; PSPTO_0584; phage(gi34419278) | 1e-11 | Click |
| 16 | complement(642156..642623) | hypothetical protein; PSPTO_0585 | N/A | Click |
| 17 | 644311..645321 | PHAGE_Mycoba_Porky: gp51; PSPTO_0586; phage(gi194303347) | 1e-07 | Click |
| 18 | 645345..647486 | site-specific recombinase, phage integrase family; PSPTO_0587 | N/A | Click |
| 19 | 656971..656982 | attR TCTTGCAGGCGC | N/A | Click |
Region 2, total : 22 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 2253004..2253381 | PHAGE_Acinet_Bphi_B1251: hypothetical protein; PSPTO_2078; phage(gi423262009) | 9e-08 | Click |
| 2 | 2253384..2253746 | PHAGE_Acinet_Bphi_B1251: hypothetical protein; PSPTO_2079; phage(gi423262010) | 7e-15 | Click |
| 3 | 2253746..2254126 | PHAGE_Cronob_phiES15: hypothetical protein; PSPTO_2080; phage(gi401817600) | 7e-15 | Click |
| 4 | 2254123..2254575 | PHAGE_Acinet_Bphi_B1251: hypothetical protein; PSPTO_2081; phage(gi423262013) | 5e-26 | Click |
| 5 | complement(2254666..2255499) | PHAGE_Entero_mEpX2: tail length tape measure protein; PSPTO_2082; phage(gi428765628) | 2e-07 | Click |
| 6 | complement(2255556..2256083) | hypothetical protein; PSPTO_2083 | N/A | Click |
| 7 | complement(2256299..2256550) | hypothetical protein; PSPTO_2084 | N/A | Click |
| 8 | complement(2256568..2256963) | hypothetical protein; PSPTO_2085 | N/A | Click |
| 9 | complement(2257112..2257294) | PHAGE_Acinet_Bphi_B1251: hypothetical protein; PSPTO_2086; phage(gi423262017) | 1e-06 | Click |
| 10 | 2257405..2257713 | PHAGE_Yersin_PY54: hypothetical protein PY54p17; PSPTO_2087; phage(gi33770526) | 2e-12 | Click |
| 11 | 2257716..2258114 | PHAGE_Yersin_PY54: hypothetical protein PY54p19; PSPTO_2088; phage(gi33770528) | 8e-31 | Click |
| 12 | 2258114..2261395 | PHAGE_Entero_vB_EcoM_FV3: putative tail fiber protein; PSPTO_2089; phage(gi422936358) | 2e-119 | Click |
| 13 | 2261392..2261760 | hypothetical protein; PSPTO_2090 | N/A | Click |
| 14 | 2261757..2262419 | PHAGE_Pseudo_LIT1: hypothetical protein PP-LIT1_gp54; PSPTO_2091; phage(gi282598901) | 7e-11 | Click |
| 15 | 2262447..2263874 | PHAGE_Entero_JL1: putative tail tip protein; PSPTO_2092; phage(gi414090307) | 9e-14 | Click |
| 16 | 2263954..2264487 | PHAGE_Microc_LMM01: chitinase; PSPTO_2093; phage(gi117530240) | 1e-42 | Click |
| 17 | 2264484..2264999 | PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; PSPTO_2094; phage(gi16765210) | 1e-11 | Click |
| 18 | 2265012..2265224 | hypothetical protein; PSPTO_2095 | N/A | Click |
| 19 | 2265221..2266465 | PHAGE_Pseudo_EL: putative GDSL lipase family protein; PSPTO_2096; phage(gi82701090) | 1e-12 | Click |
| 20 | complement(2266664..2266753) | tRNA | N/A | Click |
| 21 | complement(2266931..2267680) | PHAGE_Tricho_2c: hypothetical protein TNAV2c_gp071; PSPTO_2097; phage(gi116326757) | 6e-25 | Click |
| 22 | 2267792..2268358 | isochorismatase family protein; PSPTO_2098 | N/A | Click |
| 23 | complement(2268366..2271122) | PHAGE_Autogr_nucleopolyhedrovirus: global transactivator-like protein; PSPTO_2099; phage(gi9627784) | 6e-51 | Click |
Region 3, total : 37 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 3824685..3824698 | attL TGGAAATCTTCAAA | N/A | Click |
| 2 | 3824867..3826042 | PROPHAGE_Escher_CFT073: putative prophage integrase; PSPTO_3385; phage(gi26250313) | 2e-78 | Click |
| 3 | complement(3826104..3828458) | hypothetical protein; PSPTO_3386 | N/A | Click |
| 4 | complement(3829451..3829780) | hypothetical protein; PSPTO_3387 | N/A | Click |
| 5 | complement(3830042..3830836) | PHAGE_Burkho_KS9: DNA adenine methylase gp25; PSPTO_3388; phage(gi255033757) | 9e-99 | Click |
| 6 | complement(3831038..3831583) | PHAGE_Salmon_PVP_SE1: lysozyme; PSPTO_3389; phage(gi363539668) | 4e-48 | Click |
| 7 | complement(3831622..3832665) | PHAGE_Vibrio_vB_VpaM_MAR: putative tail protein; PSPTO_3390; phage(gi428782753) | 4e-48 | Click |
| 8 | complement(3832757..3832963) | PHAGE_Ralsto_phiRSA1: phage tail X; PSPTO_3391; phage(gi145708085) | 1e-06 | Click |
| 9 | complement(3832938..3833702) | PHAGE_Vibrio_vB_VpaM_MAR: putative tail protein; PSPTO_3392; phage(gi428782751) | 6e-22 | Click |
| 10 | complement(3833793..3836543) | PHAGE_Haemop_SuMu: bacteriophage tail length determination protein; PSPTO_3393; phage(gi418489066) | 8e-27 | Click |
| 11 | complement(3836682..3836984) | hypothetical protein; PSPTO_3394 | N/A | Click |
| 12 | complement(3837000..3837509) | PHAGE_Vibrio_vB_VpaM_MAR: tail tube protein; PSPTO_3395; phage(gi428782747) | 3e-34 | Click |
| 13 | complement(3837522..3838685) | PHAGE_Vibrio_vB_VpaM_MAR: tail sheath protein; PSPTO_3396; phage(gi428782746) | 3e-82 | Click |
| 14 | complement(3838779..3839321) | PHAGE_Pseudo_KPP12: tail fiber component; PSPTO_3397; phage(gi431811126) | 3e-08 | Click |
| 15 | complement(3839330..3841399) | PHAGE_Ralsto_phiRSA1: tail fiber protein gpH; PSPTO_3398; phage(gi145708097) | 1e-85 | Click |
| 16 | complement(3841396..3842001) | PHAGE_Ralsto_phiRSA1: phage tail protein gpI; PSPTO_3399; phage(gi145708096) | 3e-54 | Click |
| 17 | complement(3842003..3842884) | PHAGE_Pseudo_phiCTX: predicted baseplate or base of tail fiber; PSPTO_3400; phage(gi17313237) | 2e-76 | Click |
| 18 | complement(3842881..3843207) | PHAGE_Vibrio_vB_VpaM_MAR: baseplate assembly protein; PSPTO_3401; phage(gi428782737) | 9e-22 | Click |
| 19 | complement(3843211..3843489) | hypothetical protein; PSPTO_3402 | N/A | Click |
| 20 | complement(3843532..3844095) | PHAGE_Burkho_phi52237: phage baseplate assembly protein; PSPTO_3403; phage(gi72537705) | 5e-19 | Click |
| 21 | complement(3844095..3844622) | PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; PSPTO_3404; phage(gi428782734) | 3e-09 | Click |
| 22 | complement(3844615..3845271) | PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; PSPTO_3405; phage(gi428782733) | 2e-14 | Click |
| 23 | complement(3845268..3845582) | hypothetical protein; PSPTO_3406 | N/A | Click |
| 24 | complement(3845585..3846580) | PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; PSPTO_3407; phage(gi428782731) | 5e-44 | Click |
| 25 | complement(3846666..3847010) | hypothetical protein; PSPTO_3408 | N/A | Click |
| 26 | complement(3847007..3848152) | PHAGE_Entero_mEp213: head maturation protease; PSPTO_3409; phage(gi428782594) | 2e-41 | Click |
| 27 | complement(3848149..3849630) | PHAGE_Vibrio_vB_VpaM_MAR: portal protein; PSPTO_3410; phage(gi428782728) | 4e-90 | Click |
| 28 | complement(3849627..3849833) | hypothetical protein; PSPTO_3411 | N/A | Click |
| 29 | complement(3849835..3851859) | PHAGE_Vibrio_vB_VpaM_MAR: terminase large subunit; PSPTO_3412; phage(gi428782726) | 4e-53 | Click |
| 30 | complement(3851864..3852433) | PHAGE_Stenot_S1: putative terminase small subunit; PSPTO_3413; phage(gi213163901) | 2e-05 | Click |
| 31 | complement(3852658..3852804) | hypothetical protein; PSPTO_3414 | N/A | Click |
| 32 | complement(3852806..3853192) | PHAGE_Pseudo_phiCTX: predicted lysis; PSPTO_3415; phage(gi17313230) | 3e-09 | Click |
| 33 | complement(3853189..3853512) | PHAGE_Entero_SfV: holin; PSPTO_3416; phage(gi19549036) | 2e-14 | Click |
| 34 | complement(3854040..3854399) | hypothetical protein; PSPTO_3417 | N/A | Click |
| 35 | complement(3854392..3856611) | PHAGE_Staphy_phi7401PVL: virulence-associated protein E; PSPTO_3418; phage(gi448244658) | 5e-60 | Click |
| 36 | complement(3856601..3856828) | PHAGE_Vibrio_VP882: conjugative transfer protein; PSPTO_3419; phage(gi126010902) | 8e-09 | Click |
| 37 | complement(3856821..3857420) | PHAGE_Burkho_Bcep176: gp14; PSPTO_3420; phage(gi77864639) | 4e-08 | Click |
| 38 | 3857990..3858721 | PHAGE_Entero_IME10: repressor protein; PSPTO_3421; phage(gi422934295) | 2e-30 | Click |
| 39 | 3865355..3865368 | attR TGGAAATCTTCAAA | N/A | Click |
Region 4, total : 17 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(4443121..4444302) | PHAGE_Burkho_KS5: gp44; PSPTO_3930; phage(gi327198042) | 3e-10 | Click |
| 2 | 4444324..4444335 | attL ATCAAAGCAAAG | N/A | Click |
| 3 | 4445395..4445538 | hypothetical protein; PSPTO_3931 | N/A | Click |
| 4 | complement(4445527..4446045) | PHAGE_Salmon_E1: tail protein; PSPTO_3932; phage(gi170676285) | 7e-09 | Click |
| 5 | complement(4446042..4446575) | PHAGE_Salmon_PVP_SE1: lysozyme; PSPTO_3933; phage(gi363539668) | 4e-40 | Click |
| 6 | complement(4446636..4446914) | PHAGE_Escher_phAPEC8: putative tail fiber assembly protein; PSPTO_3934; phage(gi448260444) | 3e-09 | Click |
| 7 | complement(4446907..4447263) | PHAGE_Pseudo_F10: hypothetical protein PPF10_gp026; PSPTO_3935; phage(gi148912791) | 2e-12 | Click |
| 8 | complement(4447263..4448261) | PHAGE_Pseudo_F10: hypothetical protein PPF10_gp025; PSPTO_3936; phage(gi148912790) | 2e-06 | Click |
| 9 | complement(4448289..4448951) | PHAGE_Pseudo_LIT1: hypothetical protein PP-LIT1_gp54; PSPTO_3937; phage(gi282598901) | 7e-11 | Click |
| 10 | complement(4448948..4449316) | hypothetical protein; PSPTO_3938 | N/A | Click |
| 11 | 4453493..4454095 | PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; PSPTO_3942; phage(gi374531713) | 3e-08 | Click |
| 12 | 4454139..4454333 | PHAGE_Pseudo_F116: regulatory protein; PSPTO_3943; phage(gi56692917) | 2e-09 | Click |
| 13 | 4454323..4455000 | hypothetical protein; PSPTO_3944 | N/A | Click |
| 14 | 4454997..4455197 | PHAGE_Pseudo_F10: hypothetical protein PPF10_gp031; PSPTO_3945; phage(gi148912796) | 1e-05 | Click |
| 15 | 4455286..4455753 | PHAGE_Bacill_phBC6A51: hypothetical protein BC1875; PSPTO_3946; phage(gi31415769) | 8e-08 | Click |
| 16 | 4455743..4456000 | hypothetical protein; PSPTO_3947 | N/A | Click |
| 17 | 4455993..4456376 | hypothetical protein; PSPTO_3948 | N/A | Click |
| 18 | 4457245..4457256 | attR ATCAAAGCAAAG | N/A | Click |
| 19 | complement(4457531..4458574) | PHAGE_Pseudo_PAJU2: putative integrase; PSPTO_3949; phage(gi209552450) | 2e-104 | Click |
Region 5, total : 16 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 4505488..4505499 | attL CCTGACGATGAA | N/A | Click |
| 2 | complement(4517028..4517564) | PHAGE_Haemop_HP2: orf34; PSPTO_4003; phage(gi17981850) | 5e-19 | Click |
| 3 | complement(4517561..4518493) | PHAGE_Haemop_HP2: orf33; PSPTO_4004; phage(gi17981849) | 8e-07 | Click |
| 4 | 4518582..4519010 | hypothetical protein; PSPTO_4005 | N/A | Click |
| 5 | complement(4518980..4521406) | PHAGE_Haemop_HP2: tail fibers; PSPTO_4006; phage(gi17981847) | 1e-49 | Click |
| 6 | complement(4521415..4521939) | PHAGE_Haemop_HP2: orf30; PSPTO_4007; phage(gi17981846) | 2e-43 | Click |
| 7 | complement(4521997..4522404) | hypothetical protein; PSPTO_4008 | N/A | Click |
| 8 | complement(4522401..4522631) | PHAGE_Entero_mEp234: prophage anti-repressor; PSPTO_4009; phage(gi428782294) | 4e-09 | Click |
| 9 | 4522782..4523486 | PHAGE_Escher_TL_2011c: repressor protein CI; PSPTO_4010; phage(gi418487062) | 2e-37 | Click |
| 10 | complement(4524096..4524380) | PHAGE_Burkho_Bcep176: gp52; PSPTO_4011; phage(gi77864677) | 3e-10 | Click |
| 11 | complement(4524602..4525363) | hypothetical protein; PSPTO_4012 | N/A | Click |
| 12 | 4525463..4526485 | PROPHAGE_Escher_CFT073: transposase; PSPTO_4013; phage(gi26248360) | 2e-78 | Click |
| 13 | 4526482..4527291 | PROPHAGE_Escher_CFT073: transposase/IS protein; PSPTO_4014; phage(gi26248359) | 6e-80 | Click |
| 14 | complement(4527317..4527565) | hypothetical protein; PSPTO_4015 | N/A | Click |
| 15 | complement(4527558..4527764) | hypothetical protein; PSPTO_4016 | N/A | Click |
| 16 | complement(4527761..4528300) | hypothetical protein; PSPTO_4017 | N/A | Click |
| 17 | 4528608..4528619 | attR CCTGACGATGAA | N/A | Click |
| 18 | complement(4528754..4530373) | PHAGE_Bacill_phBC6A51: Site-specific recombinase; PSPTO_4018; phage(gi31415812) | 4e-10 | Click |
Region 6, total : 25 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 4528890..4528901 | attL TAAACGACGATC | N/A | Click |
| 2 | complement(4540716..4541780) | PROPHAGE_Escher_MG1655: DNA strand exchange and recombination protein with protease and nuclease activity; PSPTO_4033; phage(gi16130606) | 8e-138 | Click |
| 3 | complement(4541874..4542374) | cinA domain-containing protein; PSPTO_4034 | N/A | Click |
| 4 | 4543232..4543858 | hypothetical protein; PSPTO_4035 | N/A | Click |
| 5 | complement(4543840..4544319) | PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; PSPTO_4036; phage(gi16765210) | 1e-08 | Click |
| 6 | complement(4544346..4544879) | PHAGE_Microc_LMM01: chitinase; PSPTO_4037; phage(gi117530240) | 1e-42 | Click |
| 7 | complement(4544959..4546386) | PHAGE_Entero_JL1: putative tail tip protein; PSPTO_4038; phage(gi414090307) | 9e-14 | Click |
| 8 | complement(4546414..4547076) | PHAGE_Pseudo_LIT1: hypothetical protein PP-LIT1_gp54; PSPTO_4039; phage(gi282598901) | 7e-11 | Click |
| 9 | complement(4547073..4547441) | hypothetical protein; PSPTO_4040 | N/A | Click |
| 10 | complement(4547438..4550719) | PHAGE_Yersin_PY54: tail protein; PSPTO_4041; phage(gi33770530) | 2e-111 | Click |
| 11 | complement(4550719..4551117) | PHAGE_Yersin_PY54: hypothetical protein PY54p19; PSPTO_4042; phage(gi33770528) | 9e-32 | Click |
| 12 | complement(4551120..4551722) | PHAGE_Yersin_PY54: hypothetical protein PY54p17; PSPTO_4043; phage(gi33770526) | 8e-34 | Click |
| 13 | complement(4551722..4552306) | PHAGE_Yersin_PY54: hypothetical protein PY54p16; PSPTO_4044; phage(gi33770525) | 8e-20 | Click |
| 14 | complement(4552335..4552634) | hypothetical protein; PSPTO_4045 | N/A | Click |
| 15 | complement(4552631..4556299) | PHAGE_Burkho_phiE125: putative tail length tape measure protein; PSPTO_4046; phage(gi17975176) | 4e-107 | Click |
| 16 | complement(4556356..4556718) | hypothetical protein; PSPTO_4047 | N/A | Click |
| 17 | complement(4556782..4557033) | hypothetical protein; PSPTO_4048 | N/A | Click |
| 18 | complement(4557051..4557449) | hypothetical protein; PSPTO_4049 | N/A | Click |
| 19 | complement(4557596..4558348) | PHAGE_Caulob_phiCbK: major tail tube protein; PSPTO_4050; phage(gi414087805) | 3e-13 | Click |
| 20 | 4558522..4559097 | PHAGE_Burkho_AH2: hypothetical protein; PSPTO_4051; phage(gi399529057) | 6e-18 | Click |
| 21 | 4559094..4559960 | hypothetical protein; PSPTO_4052 | N/A | Click |
| 22 | complement(4560148..4560246) | hypothetical protein; PSPTO_4053 | N/A | Click |
| 23 | 4560424..4561236 | PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; PSPTO_4054; phage(gi374531692) | 4e-22 | Click |
| 24 | 4561445..4561639 | hypothetical protein; PSPTO_4055 | N/A | Click |
| 25 | 4561688..4562275 | hypothetical protein; PSPTO_4056 | N/A | Click |
| 26 | 4562124..4562135 | attR TAAACGACGATC | N/A | Click |
| 27 | 4562518..4563495 | PHAGE_Pectob_ZF40: putative integrase; PSPTO_4057; phage(gi422936642) | 1e-22 | Click |