| Definition | Shewanella oneidensis MR-1, complete genome. |
|---|---|
| Accession | NC_004347 |
| Length | 4,969,803 |
Legend
| Hits against Virus and prophage DB | |
| Hits against Bacterial DB or GenBank file |
Region 1, total : 50 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 655830..655841 | attL AATCATTAAAAA | N/A | Click |
| 2 | 668166..669164 | PHAGE_Synech_S_SM2: zinc-containing alcohol dehydrogenase superfamily protein; SO_0640; phage(gi326781942) | 3e-08 | Click |
| 3 | complement(669361..670083) | PHAGE_Aeromo_phiO18P: putative cI repressor; SO_0641; phage(gi148727133) | 1e-39 | Click |
| 4 | 670490..672637 | PHAGE_Rhodov_RS1: integrase; SO_0643; phage(gi472342882) | 7e-52 | Click |
| 5 | 672706..673425 | PHAGE_Rhodov_RS1: transposase; SO_0644; phage(gi472342883) | 7e-30 | Click |
| 6 | 673483..674028 | PHAGE_Rhodov_RS1: hypothetical protein; SO_0645; phage(gi472342884) | 2e-06 | Click |
| 7 | 674015..674509 | PHAGE_Rhodov_RS1: hypothetical protein; SO_0646; phage(gi472342885) | 6e-12 | Click |
| 8 | 674509..674724 | hypothetical protein; SO_0647 | N/A | Click |
| 9 | 674729..675355 | PHAGE_Burkho_BcepMu: gp05; SO_0648; phage(gi48696915) | 4e-49 | Click |
| 10 | 675374..675646 | hypothetical protein; SO_0649 | N/A | Click |
| 11 | 675749..675979 | hypothetical protein; SO_0650 | N/A | Click |
| 12 | 675979..676584 | PHAGE_Entero_Mu: hypothetical protein Mup16; SO_0651; phage(gi9633506) | 1e-21 | Click |
| 13 | 676577..677032 | PHAGE_Entero_Mu: putative transcription regulator; SO_0652; phage(gi9633511) | 2e-17 | Click |
| 14 | 677098..677898 | hypothetical protein; SO_0653 | N/A | Click |
| 15 | 677934..678491 | hypothetical protein; SO_0654 | N/A | Click |
| 16 | 678530..678958 | hypothetical protein; SO_0655 | N/A | Click |
| 17 | 679107..679397 | PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; SO_0656; phage(gi24373865) | 3e-48 | Click |
| 18 | 679457..680266 | PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfB; SO_0657; phage(gi24373866) | 4e-155 | Click |
| 19 | 680263..680646 | hypothetical protein; SO_0658 | N/A | Click |
| 20 | 680636..681193 | PHAGE_Salmon_vB_SemP_Emek: lysin; SO_0659; phage(gi399498856) | 1e-20 | Click |
| 21 | 681154..681759 | PHAGE_Burkho_2: gp44, putative bacteriophage protein; SO_0660; phage(gi134288702) | 5e-05 | Click |
| 22 | 681856..682068 | zinc finger-related protein; SO_0661 | N/A | Click |
| 23 | 682065..682412 | hypothetical protein; SO_0662 | N/A | Click |
| 24 | 682412..682708 | PHAGE_Entero_Mu: hypothetical protein Mup26; SO_0663; phage(gi9633517) | 2e-11 | Click |
| 25 | 682711..682983 | hypothetical protein; SO_0664 | N/A | Click |
| 26 | 682973..683539 | PHAGE_Entero_Mu: hypothetical protein Mup27; SO_0665; phage(gi9633518) | 1e-51 | Click |
| 27 | 683539..685179 | PHAGE_Entero_Mu: putative portal protein; SO_0666; phage(gi9633519) | 6e-129 | Click |
| 28 | 685179..686780 | PHAGE_Entero_Mu: hypothetical protein Mup29; SO_0667; phage(gi9633520) | 3e-121 | Click |
| 29 | 686773..688110 | PHAGE_Entero_Mu: virion morphogenesis late F orf; SO_0668; phage(gi9633521) | 2e-100 | Click |
| 30 | 688258..688710 | PHAGE_Entero_Mu: putative virion morphogenesis protein; SO_0669; phage(gi9633522) | 7e-22 | Click |
| 31 | complement(688755..689648) | hypothetical protein; SO_0670 | N/A | Click |
| 32 | 689864..690100 | hypothetical protein; SO_0671 | N/A | Click |
| 33 | 690146..690760 | hypothetical protein; SO_0672 | N/A | Click |
| 34 | 690904..692157 | hypothetical protein; SO_0673 | N/A | Click |
| 35 | 692234..693403 | PHAGE_Entero_Mu: putative protease protein; SO_0674; phage(gi9633523) | 5e-64 | Click |
| 36 | 693403..694323 | PHAGE_Entero_Mu: major head subunit; SO_0675; phage(gi9633525) | 4e-83 | Click |
| 37 | 694394..694840 | PHAGE_Entero_Mu: hypothetical protein Mup35; SO_0676; phage(gi9633526) | 1e-13 | Click |
| 38 | 694843..695283 | PHAGE_Entero_Mu: hypothetical protein Mup36; SO_0677; phage(gi9633527) | 3e-21 | Click |
| 39 | 695283..695726 | PHAGE_Pseudo_JBD5: hypothetical protein; SO_0678; phage(gi448245029) | 6e-05 | Click |
| 40 | 695755..696501 | PHAGE_Stenot_S1: putative tail protein a; SO_0679; phage(gi213163914) | 2e-10 | Click |
| 41 | 696621..700547 | PHAGE_Mannhe_phiMHaA1: tail protein T; SO_0680; phage(gi109289951) | 4e-28 | Click |
| 42 | 700544..700909 | hypothetical protein; SO_0681 | N/A | Click |
| 43 | 700922..703417 | PHAGE_Stenot_S1: putative tail protein b; SO_0682; phage(gi213163918) | 2e-35 | Click |
| 44 | 703429..703908 | PHAGE_Stenot_S1: hypothetical protein StPS1_gp20; SO_0683; phage(gi213163919) | 1e-08 | Click |
| 45 | complement(703881..704690) | PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfB; SO_0684; phage(gi24373866) | 4e-155 | Click |
| 46 | complement(704750..705040) | PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; SO_0685; phage(gi24373865) | 3e-48 | Click |
| 47 | 705159..705623 | hypothetical protein; SO_0686 | N/A | Click |
| 48 | 705616..705918 | hypothetical protein; SO_0687 | N/A | Click |
| 49 | 705915..707714 | PHAGE_Stenot_S1: putative tail protein c; SO_0688; phage(gi213163920) | 3e-28 | Click |
| 50 | 707711..707932 | hypothetical protein; SO_0689 | N/A | Click |
| 51 | 708075..708836 | PHAGE_Vibrio_VP882: DNA adenine methylase; SO_0690; phage(gi126010878) | 4e-95 | Click |
| 52 | 720989..721000 | attR AATCATTAAAAA | N/A | Click |
Region 2, total : 58 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(2788307..2789053) | PHAGE_Aeromo_phiO18P: putative cI repressor; SO_2652; phage(gi148727133) | 2e-34 | Click |
| 2 | 2789206..2789430 | PHAGE_Entero_Mu: DNA binding protein ner; SO_2653; phage(gi9633495) | 2e-12 | Click |
| 3 | 2789442..2791451 | PHAGE_Entero_Mu: transposase; SO_2654; phage(gi9633496) | 2e-174 | Click |
| 4 | 2791496..2792452 | PHAGE_Entero_Mu: DNA transposition protein; SO_2655; phage(gi9633513) | 5e-72 | Click |
| 5 | 2792460..2792714 | hypothetical protein; SO_2656 | N/A | Click |
| 6 | 2792711..2793031 | hypothetical protein; SO_2657 | N/A | Click |
| 7 | 2793035..2793262 | hypothetical protein; SO_2658 | N/A | Click |
| 8 | 2793265..2793585 | hypothetical protein; SO_2659 | N/A | Click |
| 9 | 2793600..2794220 | PHAGE_Burkho_phiE255: gp36; SO_2660; phage(gi134288843) | 1e-45 | Click |
| 10 | 2794446..2794721 | hypothetical protein; SO_2661 | N/A | Click |
| 11 | complement(2794702..2794938) | hypothetical protein; SO_2662 | N/A | Click |
| 12 | 2794705..2794887 | hypothetical protein; SO_2662.1 | N/A | Click |
| 13 | 2794982..2795551 | PHAGE_Pseudo_JBD24: hypothetical protein; SO_2663; phage(gi448245062) | 1e-18 | Click |
| 14 | 2795635..2795928 | hypothetical protein; SO_2664 | N/A | Click |
| 15 | 2795964..2796221 | hypothetical protein; SO_2665 | N/A | Click |
| 16 | 2796231..2796797 | hypothetical protein; SO_2666 | N/A | Click |
| 17 | 2796806..2797339 | PHAGE_Entero_Mu: hypothetical protein Mup16; SO_2667; phage(gi9633506) | 9e-28 | Click |
| 18 | 2797700..2798137 | PHAGE_Entero_Mu: Mor; SO_2668; phage(gi9633507) | 8e-17 | Click |
| 19 | 2798154..2798348 | hypothetical protein; SO_2669 | N/A | Click |
| 20 | 2798395..2798841 | hypothetical protein; SO_2670 | N/A | Click |
| 21 | 2798918..2799508 | PHAGE_Edward_KF_1: hypothetical protein; SO_2671; phage(gi414090350) | 7e-16 | Click |
| 22 | 2799508..2799768 | hypothetical protein; SO_2672 | N/A | Click |
| 23 | 2799753..2800361 | hypothetical protein; SO_2673 | N/A | Click |
| 24 | 2800361..2800576 | PHAGE_Burkho_KS10: hypothetical protein KS10_gp07; SO_2674; phage(gi198449269) | 9e-05 | Click |
| 25 | 2800576..2800878 | hypothetical protein; SO_2675 | N/A | Click |
| 26 | 2800887..2801177 | PHAGE_Entero_Mu: hypothetical protein Mup26; SO_2676; phage(gi9633517) | 4e-22 | Click |
| 27 | 2801187..2801768 | PHAGE_Entero_Mu: hypothetical protein Mup27; SO_2677; phage(gi9633518) | 1e-32 | Click |
| 28 | 2801768..2801962 | PHAGE_Aeromo_phiAS5: hypothetical protein; SO_2678; phage(gi310722747) | 5e-14 | Click |
| 29 | 2801965..2803524 | PHAGE_Entero_Mu: putative portal protein; SO_2679; phage(gi9633519) | 7e-129 | Click |
| 30 | 2803521..2805086 | PHAGE_Pseudo_MP29: portal protein; SO_2680; phage(gi215480002) | 3e-55 | Click |
| 31 | 2805070..2805858 | PHAGE_Entero_Mu: virion morphogenesis late F orf; SO_2681; phage(gi9633521) | 7e-34 | Click |
| 32 | 2806050..2806283 | hypothetical protein; SO_2682 | N/A | Click |
| 33 | 2806261..2806497 | hypothetical protein; SO_2683 | N/A | Click |
| 34 | 2806693..2807652 | PHAGE_Pseudo_JBD5: hypothetical protein; SO_2684; phage(gi448245023) | 2e-20 | Click |
| 35 | 2807652..2808551 | PHAGE_Rhodov_RS1: major head protein; SO_2685; phage(gi472342916) | 5e-55 | Click |
| 36 | 2808609..2808857 | hypothetical protein; SO_2686 | N/A | Click |
| 37 | 2808861..2809421 | PHAGE_Edward_KF_1: hypothetical protein; SO_2687; phage(gi414090359) | 1e-22 | Click |
| 38 | 2809460..2810119 | PHAGE_Xantho_CP2: hypothetical protein; SO_2688; phage(gi448245209) | 8e-06 | Click |
| 39 | 2810151..2810582 | PHAGE_Entero_Mu: hypothetical protein Mup36; SO_2689; phage(gi9633527) | 9e-07 | Click |
| 40 | 2810636..2811133 | PHAGE_Rhodob_RcapMu: virion morphogenesis protein; SO_2690; phage(gi356870876) | 9e-08 | Click |
| 41 | 2811130..2811720 | PHAGE_Burkho_KS10: hypothetical protein KS10_gp35; SO_2691; phage(gi198449297) | 3e-05 | Click |
| 42 | 2811737..2811901 | hypothetical protein; SO_2692 | N/A | Click |
| 43 | 2811904..2813385 | PHAGE_Entero_Mu: major tail subunit; SO_2693; phage(gi9633530) | 4e-112 | Click |
| 44 | 2813402..2813755 | PHAGE_Entero_Mu: hypothetical protein Mup40; SO_2694; phage(gi9633531) | 9e-05 | Click |
| 45 | 2813755..2814114 | PHAGE_Entero_Mu: hypothetical protein Mup41; SO_2695; phage(gi9633532) | 4e-10 | Click |
| 46 | 2814240..2815901 | PHAGE_Entero_Mu: putative tape measure protein; SO_2697; phage(gi9633533) | 3e-33 | Click |
| 47 | 2815923..2817239 | PHAGE_Entero_Mu: putative DNA circulation protein; SO_2698; phage(gi9633534) | 5e-19 | Click |
| 48 | 2817239..2818318 | PHAGE_Entero_Mu: putative tail protein; SO_2699; phage(gi9633535) | 6e-51 | Click |
| 49 | 2818312..2818959 | PHAGE_Entero_Mu: putative baseplate assembly protein; SO_2700; phage(gi9633536) | 2e-30 | Click |
| 50 | 2818962..2819417 | PHAGE_Entero_Mu: hypothetical protein Mup46; SO_2701; phage(gi9633537) | 3e-19 | Click |
| 51 | 2819407..2820474 | PHAGE_Entero_Mu: hypothetical protein Mup47; SO_2702; phage(gi9633538) | 5e-50 | Click |
| 52 | 2820459..2821043 | PHAGE_Entero_Mu: hypothetical protein Mup48; SO_2703; phage(gi9633539) | 2e-18 | Click |
| 53 | 2821109..2822836 | PHAGE_Entero_Mu: tail fiber; SO_2704; phage(gi9633540) | 8e-06 | Click |
| 54 | complement(2822980..2825616) | PHAGE_Acanth_moumouvirus: DNA topoisomerase 1; SO_2705; phage(gi441432186) | 5e-87 | Click |
| 55 | 2825948..2827282 | succinylarginine dihydrolase; SO_2706 | N/A | Click |
| 56 | complement(2827375..2827890) | PHAGE_Plankt_PaV_LD: putative acetyltransferase; SO_2707; phage(gi371496157) | 6e-07 | Click |
| 57 | complement(2827927..2828475) | nitroreductase family protein; SO_2708 | N/A | Click |
| 58 | complement(2828594..2829187) | PHAGE_Cyanop_MED4_213: membrane protein; SO_2710; phage(gi472340360) | 3e-05 | Click |
Region 3, total : 41 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 3080723..3080736 | attL ACGCCACCAGCGAC | N/A | Click |
| 2 | complement(3090139..3090474) | PHAGE_Escher_HK75: minor tail protein; SO_2952; phage(gi356870692) | 3e-25 | Click |
| 3 | complement(3090474..3093218) | PHAGE_Xantho_CP1: putative tail length tape measure protein; SO_2953; phage(gi431811013) | 7e-116 | Click |
| 4 | complement(3093290..3093442) | hypothetical protein; SO_2954 | N/A | Click |
| 5 | complement(3093481..3093975) | PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; SO_2955; phage(gi374531662) | 4e-11 | Click |
| 6 | complement(3094063..3094536) | PHAGE_Pseudo_vB_PaeS_PMG1: putative major tail protein; SO_2956; phage(gi374531661) | 1e-25 | Click |
| 7 | complement(3094631..3094999) | PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; SO_2957; phage(gi374531660) | 2e-35 | Click |
| 8 | complement(3094996..3095457) | PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; SO_2958; phage(gi374531659) | 5e-31 | Click |
| 9 | complement(3095460..3095696) | hypothetical protein; SO_2959 | N/A | Click |
| 10 | complement(3095699..3096061) | PHAGE_Pseudo_vB_PaeS_PMG1: putative head-tail adaptor; SO_2960; phage(gi374531655) | 2e-34 | Click |
| 11 | complement(3096061..3096357) | PHAGE_Pseudo_vB_PaeS_PMG1: putative head-tail connector protein; SO_2961; phage(gi374531654) | 8e-23 | Click |
| 12 | complement(3096379..3096663) | PHAGE_Helico_2: hypothetical protein; SO_2962; phage(gi370703036) | 6e-07 | Click |
| 13 | complement(3096752..3097942) | PHAGE_Pseudo_vB_PaeS_PMG1: major capsid protein; SO_2963; phage(gi374531651) | 8e-145 | Click |
| 14 | complement(3097955..3098809) | PHAGE_Pseudo_vB_PaeS_PMG1: Clp protease; SO_2964; phage(gi374531650) | 7e-70 | Click |
| 15 | complement(3098819..3100117) | PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; SO_2965; phage(gi374531649) | 2e-136 | Click |
| 16 | complement(3100114..3100275) | PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; SO_2966; phage(gi374531648) | 6e-09 | Click |
| 17 | complement(3100275..3102020) | PHAGE_Pseudo_vB_PaeS_PMG1: terminase large subunit; SO_2967; phage(gi374531647) | 2e-68 | Click |
| 18 | complement(3101977..3102489) | PHAGE_Entero_mEp235: terminase small subunit; SO_2968; phage(gi428781811) | 5e-23 | Click |
| 19 | complement(3102501..3102830) | PHAGE_Pseudo_PAJU2: putative endonuclease; SO_2969; phage(gi209552497) | 8e-33 | Click |
| 20 | complement(3102827..3103195) | hypothetical protein; SO_2970 | N/A | Click |
| 21 | complement(3103179..3103448) | hypothetical protein; SO_2971 | N/A | Click |
| 22 | complement(3103565..3104089) | hypothetical protein; SO_2972 | N/A | Click |
| 23 | complement(3104244..3104756) | PHAGE_Burkho_DC1: lysozyme; SO_2973; phage(gi401723082) | 3e-43 | Click |
| 24 | complement(3104760..3105023) | PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; SO_2974; phage(gi428782778) | 2e-21 | Click |
| 25 | complement(3105181..3105471) | hypothetical protein; SO_2974.1 | N/A | Click |
| 26 | complement(3105500..3105835) | hypothetical protein; SO_2975 | N/A | Click |
| 27 | complement(3105861..3106184) | PHAGE_Entero_N15: gp57; SO_2976; phage(gi9630522) | 3e-21 | Click |
| 28 | complement(3106441..3106746) | hypothetical protein; SO_2977 | N/A | Click |
| 29 | complement(3106800..3107999) | PROPHAGE_Escher_MG1655: CP4-57 prophage; integrase; SO_2978; phage(gi16130540) | 4e-13 | Click |
| 30 | complement(3107999..3108601) | hypothetical protein; SO_2979 | N/A | Click |
| 31 | complement(3108598..3109164) | hypothetical protein; SO_2980 | N/A | Click |
| 32 | complement(3109165..3109749) | hypothetical protein; SO_2981 | N/A | Click |
| 33 | complement(3109740..3110255) | PHAGE_Marino_P12026: hypothetical protein; SO_2982; phage(gi399528341) | 1e-27 | Click |
| 34 | complement(3110252..3110644) | hypothetical protein; SO_2983 | N/A | Click |
| 35 | complement(3110628..3111188) | PHAGE_Pseudo_PAJU2: putative replication protein P; SO_2984; phage(gi209552483) | 5e-17 | Click |
| 36 | complement(3111160..3112176) | PHAGE_Entero_mEp237: DNA replication protein O; SO_2985; phage(gi435439307) | 3e-43 | Click |
| 37 | complement(3112287..3112580) | hypothetical protein; SO_2986 | N/A | Click |
| 38 | complement(3112580..3112774) | PHAGE_Erwini_phiEt88: hypothetical protein; SO_2987; phage(gi327198594) | 9e-06 | Click |
| 39 | complement(3112767..3113276) | PHAGE_Burkho_phiE125: hypothetical protein phiE125p56; SO_2988; phage(gi17975217) | 9e-14 | Click |
| 40 | complement(3113304..3113570) | PHAGE_Stx2_c_II: Cro protein; SO_2989; phage(gi302393139) | 7e-11 | Click |
| 41 | 3113660..3114478 | PHAGE_Pseudo_F116: transcriptional regulator; SO_2990; phage(gi56692918) | 4e-41 | Click |
| 42 | 3114499..3114921 | PHAGE_Entero_mEp390: hypothetical protein; SO_2991; phage(gi428782681) | 4e-19 | Click |
| 43 | 3117727..3117740 | attR ACGCCACCAGCGAC | N/A | Click |