Definition Pseudomonas fluorescens Pf-5 chromosome, complete genome.
Accession NC_004129
Length 7,074,893
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 26 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1380416..1381276  PHAGE_Plankt_PaV_LD: peptidase M23; PFL_1206; phage(gi371496248)  3e-16  Click
2 1381383..1382390  PHAGE_Synech_S_CBS1: group2 RNA polymerase sigma factor; PFL_1207; phage(gi356870821)  4e-37  Click
3 complement(1382903..1383226)  ferredoxin; PFL_1208  N/A  Click
4 complement(1383370..1385949)  PHAGE_Cafete_BV_PW1: putative DNA mismatch repair protein MutS; PFL_1209; phage(gi310831476)  2e-32  Click
5 1386136..1386882  PHAGE_Pseudo_F116: transcriptional regulator; PFL_1210; phage(gi56692918)  1e-39  Click
6 1387400..1387750  holin; PFL_1211  N/A  Click
7 1387843..1388166  PROPHAGE_Xylell_Temecula1: phage-related tail protein; PFL_1212; phage(gi28198980)  2e-06  Click
8 1388216..1389352  PHAGE_Cydia__granulovirus: ORF10 chitinase; PFL_1213; phage(gi14602251)  8e-06  Click
9 1389510..1390091  PHAGE_Entero_SfV: hypothetical protein SfVp09; PFL_1214; phage(gi19548999)  6e-18  Click
10 1390088..1390270  PHAGE_Entero_SfV: hypothetical protein SfVp10; PFL_1215; phage(gi19549000)  4e-08  Click
11 1390270..1391766  PHAGE_Entero_SfV: tail sheath protein; PFL_1216; phage(gi19549001)  9e-142  Click
12 1391833..1392180  PHAGE_Entero_SfV: hypothetical protein SfVp12; PFL_1217; phage(gi19549002)  2e-16  Click
13 1392177..1392473  PHAGE_Entero_SfV: hypothetical protein SfVp13; PFL_1218; phage(gi19549003)  4e-13  Click
14 1392604..1394202  PHAGE_Entero_SfV: tail protein; PFL_1219; phage(gi19549004)  8e-19  Click
15 1394192..1395436  PHAGE_Entero_SfV: tail/DNA circulation protein; PFL_1220; phage(gi19549005)  1e-38  Click
16 1395440..1396480  PHAGE_Entero_SfV: tail protein; PFL_1221; phage(gi19549006)  2e-60  Click
17 1396590..1397096  PHAGE_Entero_SfV: tail protein; PFL_1222; phage(gi19549007)  3e-21  Click
18 1397099..1397497  PHAGE_Entero_SfV: tail protein; PFL_1223; phage(gi19549008)  8e-22  Click
19 1397487..1398527  PHAGE_Entero_SfV: tail protein; PFL_1224; phage(gi19549009)  8e-61  Click
20 1398515..1399114  PHAGE_Entero_SfV: tail protein; PFL_1225; phage(gi19548988)  3e-11  Click
21 1399130..1400239  PHAGE_Ralsto_phiRSA1: phage tail collar protein; PFL_1226; phage(gi145708098)  4e-20  Click
22 1400664..1401227  PHAGE_Salmon_PVP_SE1: lysozyme; PFL_1227; phage(gi363539668)  7e-43  Click
23 1401335..1401850  PHAGE_Burkho_KS5: gp32; PFL_1228; phage(gi327198030)  2e-29  Click
24 1402010..1402960  putidacin L1; PFL_1229  N/A  Click
25 1403261..1403761  CinA domain-containing protein; PFL_1230  N/A  Click
26 1403845..1404897  PROPHAGE_Escher_MG1655: DNA strand exchange and recombination protein with protease and nuclease activity; PFL_1231; phage(gi16130606)  4e-139  Click
Region 2, total : 46 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2206875..2206893  attL    TCCAATCCATCATCGGCGC  N/A  Click
2 2207060..2208202  PHAGE_Burkho_DC1: integrase; PFL_1976; phage(gi401723020)  4e-103  Click
3 complement(2208449..2208922)  hypothetical protein; PFL_1977  N/A  Click
4 complement(2209446..2211179)  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp44; PFL_1978; phage(gi17313261)  0.0  Click
5 complement(2211169..2211507)  hypothetical protein; PFL_1979  N/A  Click
6 complement(2211507..2211728)  hypothetical protein; PFL_1980  N/A  Click
7 complement(2211725..2212144)  hypothetical protein; PFL_1981  N/A  Click
8 complement(2212189..2212515)  PHAGE_Burkho_AH2: excisionase; PFL_1982; phage(gi399529070)  1e-06  Click
9 complement(2212674..2212958)  hypothetical protein; PFL_1983  N/A  Click
10 complement(2212968..2213552)  hypothetical protein; PFL_1984  N/A  Click
11 2213627..2213758  hypothetical protein; PFL_1985  N/A  Click
12 complement(2213809..2214522)  PHAGE_Entero_ST64T: C2; PFL_1986; phage(gi24371557)  5e-23  Click
13 complement(2215205..2215369)  hypothetical protein; PFL_1987  N/A  Click
14 2215400..2215738  hypothetical protein; PFL_1988  N/A  Click
15 2215930..2218167  PHAGE_Staphy_2638A: ORF003; PFL_1989; phage(gi66395453)  7e-58  Click
16 2218181..2218525  hypothetical protein; PFL_1990  N/A  Click
17 2219046..2219390  holin; PFL_1991  N/A  Click
18 2219596..2220168  hypothetical protein; PFL_1992  N/A  Click
19 2220134..2222185  PHAGE_Vibrio_vB_VpaM_MAR: terminase large subunit; PFL_1993; phage(gi428782726)  3e-50  Click
20 2222187..2222393  PHAGE_Stenot_S1: putative peptidase b; PFL_1994; phage(gi213163904)  4e-06  Click
21 2222393..2223874  PHAGE_Vibrio_vB_VpaM_MAR: portal protein; PFL_1995; phage(gi428782728)  2e-92  Click
22 2223871..2225013  PHAGE_Entero_mEp213: head maturation protease; PFL_1996; phage(gi428782594)  5e-41  Click
23 2225010..2225354  hypothetical protein; PFL_1997  N/A  Click
24 2225418..2226413  PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; PFL_1998; phage(gi428782731)  1e-46  Click
25 2226416..2226730  hypothetical protein; PFL_1999  N/A  Click
26 2226727..2227380  PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; PFL_2000; phage(gi428782733)  1e-13  Click
27 2227373..2227885  PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; PFL_2001; phage(gi428782734)  2e-06  Click
28 2227912..2228472  PHAGE_Pseudo_phiCTX: predicted baseplate; PFL_2002; phage(gi17313235)  8e-20  Click
29 2228537..2228737  hypothetical protein; PFL_2003  N/A  Click
30 2228742..2229068  PHAGE_Vibrio_vB_VpaM_MAR: baseplate assembly protein; PFL_2004; phage(gi428782737)  2e-20  Click
31 2229065..2229946  PHAGE_Pseudo_phiCTX: predicted baseplate or base of tail fiber; PFL_2005; phage(gi17313237)  9e-82  Click
32 2229948..2230553  PHAGE_Ralsto_phiRSA1: phage tail protein gpI; PFL_2006; phage(gi145708096)  1e-53  Click
33 2230550..2231776  PHAGE_Erwini_ENT90: phage tail collar domain protein; PFL_2007; phage(gi431810938)  2e-59  Click
34 2231776..2232558  PHAGE_Pseudo_H105/1: phage tail fiber adhesin; PFL_2008; phage(gi327198551)  1e-14  Click
35 2232704..2233870  PHAGE_Vibrio_vB_VpaM_MAR: tail sheath protein; PFL_2009; phage(gi428782746)  4e-85  Click
36 2233889..2234392  PHAGE_Vibrio_vB_VpaM_MAR: tail tube protein; PFL_2010; phage(gi428782747)  3e-34  Click
37 2234404..2234709  hypothetical protein; PFL_2011  N/A  Click
38 2234717..2234821  hypothetical protein; PFL_2012  N/A  Click
39 2234851..2237418  PHAGE_Vibrio_VP882: phage-related tail protein; PFL_2013; phage(gi126010872)  3e-35  Click
40 2237427..2238272  PHAGE_Vibrio_vB_VpaM_MAR: putative tail protein; PFL_2014; phage(gi428782751)  6e-22  Click
41 2238247..2238453  PHAGE_Ralsto_phiRSA1: phage tail X; PFL_2015; phage(gi145708085)  1e-06  Click
42 complement(2238450..2238920)  hypothetical protein; PFL_2016  N/A  Click
43 2239001..2240044  PHAGE_Vibrio_vB_VpaM_MAR: putative tail protein; PFL_2017; phage(gi428782753)  4e-50  Click
44 2240071..2240622  PHAGE_Cronob_vB_CsaM_GAP31: lysozyme; PFL_2018; phage(gi414086784)  2e-48  Click
45 2240619..2241140  PHAGE_Burkho_Bcep22: Bcep22gp80; PFL_2019; phage(gi38640385)  2e-12  Click
46 2241205..2242950  hypothetical protein; PFL_2020  N/A  Click
47 complement(2243016..2243699)  PHAGE_Pseudo_F116: hypothetical protein F116p67; PFL_2021; phage(gi56692976)  7e-86  Click
48 2248337..2248355  attR    TCCAATCCATCATCGGCGC  N/A  Click
Region 3, total : 33 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(4352798..4353562)  PHAGE_Burkho_phiE125: putative tail component protein; PFL_3749; phage(gi17975180)  3e-64  Click
2 complement(4353565..4354248)  PHAGE_Burkho_KS9: minor tail protein gp16; PFL_3750; phage(gi255033747)  2e-61  Click
3 complement(4354276..4355469)  PHAGE_Entero_T5: L-shaped tail fiber protein; PFL_3751; phage(gi46401894)  9e-43  Click
4 complement(4355466..4355843)  PHAGE_Entero_mEp234: minor tail protein M; PFL_3752; phage(gi428782269)  6e-28  Click
5 complement(4356172..4359495)  PHAGE_Pseudo_MP29: putative tail component protein; PFL_3753; phage(gi215480016)  4e-122  Click
6 complement(4359809..4360189)  PHAGE_Cronob_phiES15: hypothetical protein; PFL_3754; phage(gi401817603)  3e-06  Click
7 complement(4360193..4360849)  PHAGE_Cronob_phiES15: putative major tail protein; PFL_3755; phage(gi401817602)  5e-36  Click
8 complement(4361252..4361668)  PHAGE_Cronob_phiES15: hypothetical protein; PFL_3756; phage(gi401817601)  9e-09  Click
9 complement(4361665..4362318)  PHAGE_Shigel_EP23: putative tail protein; PFL_3757; phage(gi371496282)  2e-24  Click
10 complement(4362315..4362683)  PHAGE_Pseudo_M6: hypothetical protein ORF025; PFL_3758; phage(gi149408254)  7e-10  Click
11 complement(4362700..4363203)  PHAGE_Escher_HK639: hypothetical protein; PFL_3759; phage(gi356870608)  2e-16  Click
12 complement(4363207..4363515)  hypothetical protein; PFL_3760  N/A  Click
13 complement(4363567..4364514)  PHAGE_Cronob_phiES15: putative major capsid protein; PFL_3761; phage(gi401817596)  1e-31  Click
14 complement(4364526..4365242)  PHAGE_Cronob_phiES15: hypothetical protein; PFL_3762; phage(gi401817595)  5e-40  Click
15 4365352..4365819  hypothetical protein; PFL_3763  N/A  Click
16 complement(4365833..4366921)  PHAGE_Salmon_vB_SenS_Ent1: putative head morphogenesis protein, SPP1 gp7 family; PFL_3764; phage(gi423261851)  1e-55  Click
17 complement(4366896..4368359)  PHAGE_Burkho_KL1: portal protein; PFL_3765; phage(gi399528722)  2e-92  Click
18 complement(4368356..4369657)  PHAGE_Pseudo_H105/1: phage terminase large subunit; PFL_3766; phage(gi327198525)  7e-106  Click
19 complement(4369644..4370105)  PHAGE_Salmon_vB_SosS_Oslo: hypothetical protein; PFL_3767; phage(gi399528759)  3e-45  Click
20 complement(4370137..4370745)  PHAGE_Cronob_ENT47670: putative transposase; PFL_3768; phage(gi431810514)  1e-74  Click
21 complement(4371186..4371416)  PHAGE_Cronob_vB_CsaM_GAP32: hypothetical protein; PFL_3769; phage(gi414087356)  5e-17  Click
22 complement(4371474..4371788)  PHAGE_Pseudo_F10: Putative Holin; PFL_3770; phage(gi148912825)  1e-25  Click
23 complement(4372668..4372946)  hypothetical protein; PFL_3771  N/A  Click
24 complement(4373055..4373750)  PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; PFL_3772; phage(gi374531730)  6e-53  Click
25 complement(4373747..4374337)  PHAGE_Pseudo_PAJU2: putative NinG; PFL_3773; phage(gi209552490)  3e-74  Click
26 complement(4374337..4374924)  PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; PFL_3774; phage(gi374531725)  2e-96  Click
27 complement(4374917..4375717)  PHAGE_Pseudo_F116: hypothetical protein F116p33; PFL_3775; phage(gi56692949)  9e-43  Click
28 complement(4375704..4376678)  PHAGE_Pseudo_F116: hypothetical protein F116p32; PFL_3776; phage(gi56692948)  3e-39  Click
29 complement(4377096..4378115)  PHAGE_Pseudo_F10: Putative DNA-binding protein (Roi); PFL_3777; phage(gi148912814)  5e-42  Click
30 complement(4378344..4378748)  hypothetical protein; PFL_3778  N/A  Click
31 complement(4378751..4379227)  hypothetical protein; PFL_3779  N/A  Click
32 complement(4379256..4379459)  PHAGE_Pseudo_F116: Cro-like protein; PFL_6232; phage(gi56692919)  5e-08  Click
33 4379576..4380364  PHAGE_Pseudo_F116: transcriptional regulator; PFL_3780; phage(gi56692918)  1e-48  Click
Region 4, total : 8 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 4393626..4393637  attL    TTTTGTCGAGAG  N/A  Click
2 4393772..4394821  PHAGE_Pseudo_F10: Integrase; PFL_3794; phage(gi148912793)  2e-101  Click
3 4396430..4397113  PHAGE_Pseudo_F116: hypothetical protein F116p67; PFL_3796; phage(gi56692976)  2e-85  Click
4 complement(4397801..4398301)  PHAGE_Salmon_E1: tail protein; PFL_3797; phage(gi170676285)  1e-10  Click
5 complement(4398298..4398837)  PHAGE_Pseudo_F10: Predicted chitinase; lytic protein; PFL_3798; phage(gi148912826)  1e-50  Click
6 4398828..4398923  hypothetical protein; PFL_3799  N/A  Click
7 4399227..4400075  PHAGE_Pseudo_vB_PaeP_p2_10_Or1: hypothetical protein; PFL_3800; phage(gi429315977)  2e-25  Click
8 complement(4400079..4400735)  PHAGE_Lausan: metal-dependent phosphohydrolase; PFL_3801; phage(gi327409624)  3e-06  Click
9 4400893..4400904  attR    TTTTGTCGAGAG  N/A  Click
10 4401778..4402248  PHAGE_Bacill_SPBc2: hypothetical protein SPBc2p012; PFL_3802; phage(gi9630137)  2e-08  Click