Definition | Pseudomonas fluorescens Pf-5 chromosome, complete genome. |
---|---|
Accession | NC_004129 |
Length | 7,074,893 |
Legend
Hits against Virus and prophage DB | |
Hits against Bacterial DB or GenBank file |
Region 1, total : 26 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1380416..1381276 | PHAGE_Plankt_PaV_LD: peptidase M23; PFL_1206; phage(gi371496248) | 3e-16 | Click |
2 | 1381383..1382390 | PHAGE_Synech_S_CBS1: group2 RNA polymerase sigma factor; PFL_1207; phage(gi356870821) | 4e-37 | Click |
3 | complement(1382903..1383226) | ferredoxin; PFL_1208 | N/A | Click |
4 | complement(1383370..1385949) | PHAGE_Cafete_BV_PW1: putative DNA mismatch repair protein MutS; PFL_1209; phage(gi310831476) | 2e-32 | Click |
5 | 1386136..1386882 | PHAGE_Pseudo_F116: transcriptional regulator; PFL_1210; phage(gi56692918) | 1e-39 | Click |
6 | 1387400..1387750 | holin; PFL_1211 | N/A | Click |
7 | 1387843..1388166 | PROPHAGE_Xylell_Temecula1: phage-related tail protein; PFL_1212; phage(gi28198980) | 2e-06 | Click |
8 | 1388216..1389352 | PHAGE_Cydia__granulovirus: ORF10 chitinase; PFL_1213; phage(gi14602251) | 8e-06 | Click |
9 | 1389510..1390091 | PHAGE_Entero_SfV: hypothetical protein SfVp09; PFL_1214; phage(gi19548999) | 6e-18 | Click |
10 | 1390088..1390270 | PHAGE_Entero_SfV: hypothetical protein SfVp10; PFL_1215; phage(gi19549000) | 4e-08 | Click |
11 | 1390270..1391766 | PHAGE_Entero_SfV: tail sheath protein; PFL_1216; phage(gi19549001) | 9e-142 | Click |
12 | 1391833..1392180 | PHAGE_Entero_SfV: hypothetical protein SfVp12; PFL_1217; phage(gi19549002) | 2e-16 | Click |
13 | 1392177..1392473 | PHAGE_Entero_SfV: hypothetical protein SfVp13; PFL_1218; phage(gi19549003) | 4e-13 | Click |
14 | 1392604..1394202 | PHAGE_Entero_SfV: tail protein; PFL_1219; phage(gi19549004) | 8e-19 | Click |
15 | 1394192..1395436 | PHAGE_Entero_SfV: tail/DNA circulation protein; PFL_1220; phage(gi19549005) | 1e-38 | Click |
16 | 1395440..1396480 | PHAGE_Entero_SfV: tail protein; PFL_1221; phage(gi19549006) | 2e-60 | Click |
17 | 1396590..1397096 | PHAGE_Entero_SfV: tail protein; PFL_1222; phage(gi19549007) | 3e-21 | Click |
18 | 1397099..1397497 | PHAGE_Entero_SfV: tail protein; PFL_1223; phage(gi19549008) | 8e-22 | Click |
19 | 1397487..1398527 | PHAGE_Entero_SfV: tail protein; PFL_1224; phage(gi19549009) | 8e-61 | Click |
20 | 1398515..1399114 | PHAGE_Entero_SfV: tail protein; PFL_1225; phage(gi19548988) | 3e-11 | Click |
21 | 1399130..1400239 | PHAGE_Ralsto_phiRSA1: phage tail collar protein; PFL_1226; phage(gi145708098) | 4e-20 | Click |
22 | 1400664..1401227 | PHAGE_Salmon_PVP_SE1: lysozyme; PFL_1227; phage(gi363539668) | 7e-43 | Click |
23 | 1401335..1401850 | PHAGE_Burkho_KS5: gp32; PFL_1228; phage(gi327198030) | 2e-29 | Click |
24 | 1402010..1402960 | putidacin L1; PFL_1229 | N/A | Click |
25 | 1403261..1403761 | CinA domain-containing protein; PFL_1230 | N/A | Click |
26 | 1403845..1404897 | PROPHAGE_Escher_MG1655: DNA strand exchange and recombination protein with protease and nuclease activity; PFL_1231; phage(gi16130606) | 4e-139 | Click |
Region 2, total : 46 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 2206875..2206893 | attL TCCAATCCATCATCGGCGC | N/A | Click |
2 | 2207060..2208202 | PHAGE_Burkho_DC1: integrase; PFL_1976; phage(gi401723020) | 4e-103 | Click |
3 | complement(2208449..2208922) | hypothetical protein; PFL_1977 | N/A | Click |
4 | complement(2209446..2211179) | PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp44; PFL_1978; phage(gi17313261) | 0.0 | Click |
5 | complement(2211169..2211507) | hypothetical protein; PFL_1979 | N/A | Click |
6 | complement(2211507..2211728) | hypothetical protein; PFL_1980 | N/A | Click |
7 | complement(2211725..2212144) | hypothetical protein; PFL_1981 | N/A | Click |
8 | complement(2212189..2212515) | PHAGE_Burkho_AH2: excisionase; PFL_1982; phage(gi399529070) | 1e-06 | Click |
9 | complement(2212674..2212958) | hypothetical protein; PFL_1983 | N/A | Click |
10 | complement(2212968..2213552) | hypothetical protein; PFL_1984 | N/A | Click |
11 | 2213627..2213758 | hypothetical protein; PFL_1985 | N/A | Click |
12 | complement(2213809..2214522) | PHAGE_Entero_ST64T: C2; PFL_1986; phage(gi24371557) | 5e-23 | Click |
13 | complement(2215205..2215369) | hypothetical protein; PFL_1987 | N/A | Click |
14 | 2215400..2215738 | hypothetical protein; PFL_1988 | N/A | Click |
15 | 2215930..2218167 | PHAGE_Staphy_2638A: ORF003; PFL_1989; phage(gi66395453) | 7e-58 | Click |
16 | 2218181..2218525 | hypothetical protein; PFL_1990 | N/A | Click |
17 | 2219046..2219390 | holin; PFL_1991 | N/A | Click |
18 | 2219596..2220168 | hypothetical protein; PFL_1992 | N/A | Click |
19 | 2220134..2222185 | PHAGE_Vibrio_vB_VpaM_MAR: terminase large subunit; PFL_1993; phage(gi428782726) | 3e-50 | Click |
20 | 2222187..2222393 | PHAGE_Stenot_S1: putative peptidase b; PFL_1994; phage(gi213163904) | 4e-06 | Click |
21 | 2222393..2223874 | PHAGE_Vibrio_vB_VpaM_MAR: portal protein; PFL_1995; phage(gi428782728) | 2e-92 | Click |
22 | 2223871..2225013 | PHAGE_Entero_mEp213: head maturation protease; PFL_1996; phage(gi428782594) | 5e-41 | Click |
23 | 2225010..2225354 | hypothetical protein; PFL_1997 | N/A | Click |
24 | 2225418..2226413 | PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; PFL_1998; phage(gi428782731) | 1e-46 | Click |
25 | 2226416..2226730 | hypothetical protein; PFL_1999 | N/A | Click |
26 | 2226727..2227380 | PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; PFL_2000; phage(gi428782733) | 1e-13 | Click |
27 | 2227373..2227885 | PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; PFL_2001; phage(gi428782734) | 2e-06 | Click |
28 | 2227912..2228472 | PHAGE_Pseudo_phiCTX: predicted baseplate; PFL_2002; phage(gi17313235) | 8e-20 | Click |
29 | 2228537..2228737 | hypothetical protein; PFL_2003 | N/A | Click |
30 | 2228742..2229068 | PHAGE_Vibrio_vB_VpaM_MAR: baseplate assembly protein; PFL_2004; phage(gi428782737) | 2e-20 | Click |
31 | 2229065..2229946 | PHAGE_Pseudo_phiCTX: predicted baseplate or base of tail fiber; PFL_2005; phage(gi17313237) | 9e-82 | Click |
32 | 2229948..2230553 | PHAGE_Ralsto_phiRSA1: phage tail protein gpI; PFL_2006; phage(gi145708096) | 1e-53 | Click |
33 | 2230550..2231776 | PHAGE_Erwini_ENT90: phage tail collar domain protein; PFL_2007; phage(gi431810938) | 2e-59 | Click |
34 | 2231776..2232558 | PHAGE_Pseudo_H105/1: phage tail fiber adhesin; PFL_2008; phage(gi327198551) | 1e-14 | Click |
35 | 2232704..2233870 | PHAGE_Vibrio_vB_VpaM_MAR: tail sheath protein; PFL_2009; phage(gi428782746) | 4e-85 | Click |
36 | 2233889..2234392 | PHAGE_Vibrio_vB_VpaM_MAR: tail tube protein; PFL_2010; phage(gi428782747) | 3e-34 | Click |
37 | 2234404..2234709 | hypothetical protein; PFL_2011 | N/A | Click |
38 | 2234717..2234821 | hypothetical protein; PFL_2012 | N/A | Click |
39 | 2234851..2237418 | PHAGE_Vibrio_VP882: phage-related tail protein; PFL_2013; phage(gi126010872) | 3e-35 | Click |
40 | 2237427..2238272 | PHAGE_Vibrio_vB_VpaM_MAR: putative tail protein; PFL_2014; phage(gi428782751) | 6e-22 | Click |
41 | 2238247..2238453 | PHAGE_Ralsto_phiRSA1: phage tail X; PFL_2015; phage(gi145708085) | 1e-06 | Click |
42 | complement(2238450..2238920) | hypothetical protein; PFL_2016 | N/A | Click |
43 | 2239001..2240044 | PHAGE_Vibrio_vB_VpaM_MAR: putative tail protein; PFL_2017; phage(gi428782753) | 4e-50 | Click |
44 | 2240071..2240622 | PHAGE_Cronob_vB_CsaM_GAP31: lysozyme; PFL_2018; phage(gi414086784) | 2e-48 | Click |
45 | 2240619..2241140 | PHAGE_Burkho_Bcep22: Bcep22gp80; PFL_2019; phage(gi38640385) | 2e-12 | Click |
46 | 2241205..2242950 | hypothetical protein; PFL_2020 | N/A | Click |
47 | complement(2243016..2243699) | PHAGE_Pseudo_F116: hypothetical protein F116p67; PFL_2021; phage(gi56692976) | 7e-86 | Click |
48 | 2248337..2248355 | attR TCCAATCCATCATCGGCGC | N/A | Click |
Region 3, total : 33 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | complement(4352798..4353562) | PHAGE_Burkho_phiE125: putative tail component protein; PFL_3749; phage(gi17975180) | 3e-64 | Click |
2 | complement(4353565..4354248) | PHAGE_Burkho_KS9: minor tail protein gp16; PFL_3750; phage(gi255033747) | 2e-61 | Click |
3 | complement(4354276..4355469) | PHAGE_Entero_T5: L-shaped tail fiber protein; PFL_3751; phage(gi46401894) | 9e-43 | Click |
4 | complement(4355466..4355843) | PHAGE_Entero_mEp234: minor tail protein M; PFL_3752; phage(gi428782269) | 6e-28 | Click |
5 | complement(4356172..4359495) | PHAGE_Pseudo_MP29: putative tail component protein; PFL_3753; phage(gi215480016) | 4e-122 | Click |
6 | complement(4359809..4360189) | PHAGE_Cronob_phiES15: hypothetical protein; PFL_3754; phage(gi401817603) | 3e-06 | Click |
7 | complement(4360193..4360849) | PHAGE_Cronob_phiES15: putative major tail protein; PFL_3755; phage(gi401817602) | 5e-36 | Click |
8 | complement(4361252..4361668) | PHAGE_Cronob_phiES15: hypothetical protein; PFL_3756; phage(gi401817601) | 9e-09 | Click |
9 | complement(4361665..4362318) | PHAGE_Shigel_EP23: putative tail protein; PFL_3757; phage(gi371496282) | 2e-24 | Click |
10 | complement(4362315..4362683) | PHAGE_Pseudo_M6: hypothetical protein ORF025; PFL_3758; phage(gi149408254) | 7e-10 | Click |
11 | complement(4362700..4363203) | PHAGE_Escher_HK639: hypothetical protein; PFL_3759; phage(gi356870608) | 2e-16 | Click |
12 | complement(4363207..4363515) | hypothetical protein; PFL_3760 | N/A | Click |
13 | complement(4363567..4364514) | PHAGE_Cronob_phiES15: putative major capsid protein; PFL_3761; phage(gi401817596) | 1e-31 | Click |
14 | complement(4364526..4365242) | PHAGE_Cronob_phiES15: hypothetical protein; PFL_3762; phage(gi401817595) | 5e-40 | Click |
15 | 4365352..4365819 | hypothetical protein; PFL_3763 | N/A | Click |
16 | complement(4365833..4366921) | PHAGE_Salmon_vB_SenS_Ent1: putative head morphogenesis protein, SPP1 gp7 family; PFL_3764; phage(gi423261851) | 1e-55 | Click |
17 | complement(4366896..4368359) | PHAGE_Burkho_KL1: portal protein; PFL_3765; phage(gi399528722) | 2e-92 | Click |
18 | complement(4368356..4369657) | PHAGE_Pseudo_H105/1: phage terminase large subunit; PFL_3766; phage(gi327198525) | 7e-106 | Click |
19 | complement(4369644..4370105) | PHAGE_Salmon_vB_SosS_Oslo: hypothetical protein; PFL_3767; phage(gi399528759) | 3e-45 | Click |
20 | complement(4370137..4370745) | PHAGE_Cronob_ENT47670: putative transposase; PFL_3768; phage(gi431810514) | 1e-74 | Click |
21 | complement(4371186..4371416) | PHAGE_Cronob_vB_CsaM_GAP32: hypothetical protein; PFL_3769; phage(gi414087356) | 5e-17 | Click |
22 | complement(4371474..4371788) | PHAGE_Pseudo_F10: Putative Holin; PFL_3770; phage(gi148912825) | 1e-25 | Click |
23 | complement(4372668..4372946) | hypothetical protein; PFL_3771 | N/A | Click |
24 | complement(4373055..4373750) | PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; PFL_3772; phage(gi374531730) | 6e-53 | Click |
25 | complement(4373747..4374337) | PHAGE_Pseudo_PAJU2: putative NinG; PFL_3773; phage(gi209552490) | 3e-74 | Click |
26 | complement(4374337..4374924) | PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; PFL_3774; phage(gi374531725) | 2e-96 | Click |
27 | complement(4374917..4375717) | PHAGE_Pseudo_F116: hypothetical protein F116p33; PFL_3775; phage(gi56692949) | 9e-43 | Click |
28 | complement(4375704..4376678) | PHAGE_Pseudo_F116: hypothetical protein F116p32; PFL_3776; phage(gi56692948) | 3e-39 | Click |
29 | complement(4377096..4378115) | PHAGE_Pseudo_F10: Putative DNA-binding protein (Roi); PFL_3777; phage(gi148912814) | 5e-42 | Click |
30 | complement(4378344..4378748) | hypothetical protein; PFL_3778 | N/A | Click |
31 | complement(4378751..4379227) | hypothetical protein; PFL_3779 | N/A | Click |
32 | complement(4379256..4379459) | PHAGE_Pseudo_F116: Cro-like protein; PFL_6232; phage(gi56692919) | 5e-08 | Click |
33 | 4379576..4380364 | PHAGE_Pseudo_F116: transcriptional regulator; PFL_3780; phage(gi56692918) | 1e-48 | Click |
Region 4, total : 8 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 4393626..4393637 | attL TTTTGTCGAGAG | N/A | Click |
2 | 4393772..4394821 | PHAGE_Pseudo_F10: Integrase; PFL_3794; phage(gi148912793) | 2e-101 | Click |
3 | 4396430..4397113 | PHAGE_Pseudo_F116: hypothetical protein F116p67; PFL_3796; phage(gi56692976) | 2e-85 | Click |
4 | complement(4397801..4398301) | PHAGE_Salmon_E1: tail protein; PFL_3797; phage(gi170676285) | 1e-10 | Click |
5 | complement(4398298..4398837) | PHAGE_Pseudo_F10: Predicted chitinase; lytic protein; PFL_3798; phage(gi148912826) | 1e-50 | Click |
6 | 4398828..4398923 | hypothetical protein; PFL_3799 | N/A | Click |
7 | 4399227..4400075 | PHAGE_Pseudo_vB_PaeP_p2_10_Or1: hypothetical protein; PFL_3800; phage(gi429315977) | 2e-25 | Click |
8 | complement(4400079..4400735) | PHAGE_Lausan: metal-dependent phosphohydrolase; PFL_3801; phage(gi327409624) | 3e-06 | Click |
9 | 4400893..4400904 | attR TTTTGTCGAGAG | N/A | Click |
10 | 4401778..4402248 | PHAGE_Bacill_SPBc2: hypothetical protein SPBc2p012; PFL_3802; phage(gi9630137) | 2e-08 | Click |