| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
Legend
| Hits against Virus and prophage DB | |
| Hits against Bacterial DB or GenBank file |
Region 1, total : 21 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 883334..884656 | PROPHAGE_Xantho_33913: IS1478 transposase; RSc0843; phage(gi77747808) | 1e-120 | Click |
| 2 | 884735..886060 | PHAGE_Psychr_pOW20_A: DNA methylase; RSc0844; phage(gi472339820) | 1e-40 | Click |
| 3 | 886057..887292 | PHAGE_Psychr_pOW20_A: DNA methylase; RSc0845; phage(gi472339820) | 5e-71 | Click |
| 4 | complement(887252..887587) | hypothetical protein; RSc0846 | N/A | Click |
| 5 | complement(887600..888043) | PHAGE_Pseudo_MP1412: hypothetical protein; RSc0847; phage(gi399528997) | 1e-05 | Click |
| 6 | complement(888190..888378) | hypothetical protein; RSc0848 | N/A | Click |
| 7 | complement(888477..888893) | hypothetical protein; RSc0849 | N/A | Click |
| 8 | complement(888955..889449) | hypothetical protein; RSc0850 | N/A | Click |
| 9 | complement(889539..889811) | hypothetical protein; RSc0851 | N/A | Click |
| 10 | 889905..890441 | putative bacteriophage-related protein; RSc0852 | N/A | Click |
| 11 | 890441..892423 | PHAGE_Vibrio_VHML: ORF22; RSc0853; phage(gi27311189) | 6e-74 | Click |
| 12 | 892467..892976 | PHAGE_Clostr_phiMMP04: tail fiber; RSc0854; phage(gi414090463) | 8e-07 | Click |
| 13 | 892987..893379 | PHAGE_Synech_Syn5: tail fiber; RSc0855; phage(gi148724489) | 6e-06 | Click |
| 14 | 893380..893601 | hypothetical protein; RSc0856 | N/A | Click |
| 15 | 893601..895127 | PHAGE_Vibrio_VHML: ORF23; RSc0857; phage(gi27311190) | 1e-97 | Click |
| 16 | 895137..896387 | PHAGE_Klebsi_phiKO2: putative head maturation protease; RSc0858; phage(gi46402091) | 4e-52 | Click |
| 17 | 896397..896774 | PHAGE_Vibrio_VHML: ORF25; RSc0859; phage(gi27311192) | 8e-07 | Click |
| 18 | 896781..897785 | PHAGE_Vibrio_VHML: ORF26; RSc0860; phage(gi27311193) | 1e-81 | Click |
| 19 | 897788..898090 | hypothetical protein; RSc0861 | N/A | Click |
| 20 | 898096..898542 | PHAGE_Synech_S_CBS1: hypothetical protein; RSc0862; phage(gi356870805) | 9e-14 | Click |
| 21 | 898665..899438 | PHAGE_Pseudo_JBD24: hypothetical protein; RSc0863; phage(gi448245091) | 1e-38 | Click |
Region 2, total : 28 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1797957..1798331 | PHAGE_Burkho_KS9: homing endonuclease gp49; RSc1680; phage(gi255033732) | 3e-17 | Click |
| 2 | 1800814..1800972 | hypothetical protein; RSc1681 | N/A | Click |
| 3 | 1800969..1802192 | PHAGE_Entero_SfV: portal protein; RSc1682; phage(gi19548993) | 1e-136 | Click |
| 4 | 1802200..1802811 | PHAGE_Entero_SfV: capsid protease; RSc1683; phage(gi19548994) | 4e-58 | Click |
| 5 | 1802822..1804060 | PHAGE_Burkho_KS9: major capsid protein gp5; RSc1684; phage(gi255033737) | 3e-48 | Click |
| 6 | 1804094..1804417 | PHAGE_Entero_mEp235: head-tail connector II; RSc1685; phage(gi428781817) | 6e-09 | Click |
| 7 | 1804425..1804751 | PHAGE_Burkho_KS9: head-tail adaptor gp7; RSc1686; phage(gi255033739) | 9e-14 | Click |
| 8 | 1804754..1805257 | PHAGE_Xantho_CP1: hypothetical protein; RSc1687; phage(gi431811007) | 1e-11 | Click |
| 9 | 1805247..1805600 | PHAGE_Xantho_CP1: hypothetical protein; RSc1688; phage(gi431811008) | 1e-10 | Click |
| 10 | 1805664..1806317 | PHAGE_Escher_HK639: major tail protein; RSc1689; phage(gi356870612) | 1e-29 | Click |
| 11 | 1806953..1809826 | PHAGE_Pseudo_MP29: putative tail component protein; RSc1690; phage(gi215480016) | 9e-99 | Click |
| 12 | 1809829..1810167 | PHAGE_Entero_mEp234: minor tail protein M; RSc1691; phage(gi428782269) | 1e-25 | Click |
| 13 | 1810164..1810841 | PHAGE_Ralsto_phiRSA1: phage tail collar protein; RSc1692; phage(gi145708098) | 1e-32 | Click |
| 14 | 1810847..1811443 | PHAGE_Burkho_KS14: gp17; RSc1693; phage(gi327198286) | 3e-20 | Click |
| 15 | 1811440..1812141 | PHAGE_Burkho_KS9: minor tail protein gp16; RSc1694; phage(gi255033747) | 1e-73 | Click |
| 16 | 1812143..1812853 | PHAGE_Burkho_KS9: tail component protein gp17; RSc1695; phage(gi255033748) | 3e-66 | Click |
| 17 | 1812857..1813459 | PHAGE_Burkho_KS9: tail component protein gp18; RSc1696; phage(gi255033749) | 1e-53 | Click |
| 18 | complement(1813529..1813867) | PHAGE_Entero_mEp234: HicB protein; RSc1697; phage(gi428782291) | 9e-05 | Click |
| 19 | 1814170..1817325 | PHAGE_Burkho_KS9: tail tip fiber protein gp19; RSc1698; phage(gi255033750) | 0.0 | Click |
| 20 | 1817662..1818318 | PHAGE_Xantho_CP1: hypothetical protein; RSc1699; phage(gi431811021) | 3e-10 | Click |
| 21 | 1818387..1818878 | PHAGE_Salmon_E1: lysozyme; RSc1700; phage(gi170676283) | 4e-53 | Click |
| 22 | 1818878..1819186 | lipoprotein transmembrane; RSc1701 | N/A | Click |
| 23 | 1819189..1819464 | hypothetical protein; RSc1702 | N/A | Click |
| 24 | 1819464..1820009 | PHAGE_Burkho_BcepIL02: Rz-like phage lysis protein; RSc1703; phage(gi238801691) | 3e-12 | Click |
| 25 | complement(1820273..1821238) | PROPHAGE_Xantho_33913: IS1479 transposase; RSc1704; phage(gi21229605) | 4e-99 | Click |
| 26 | complement(1821305..1822462) | hypothetical protein; RSc1705 | N/A | Click |
| 27 | complement(1822504..1822806) | hypothetical protein; RSc1706 | N/A | Click |
| 28 | complement(1822838..1823953) | PHAGE_Burkho_KS10: hypothetical protein KS10_gp40; RSc1707; phage(gi198449302) | 5e-05 | Click |
Region 3, total : 46 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 2084443..2084460 | attL CCCCTCTCTCCGCCAGGA | N/A | Click |
| 2 | 2084602..2085837 | PROPHAGE_Mesorh_MAFF303099: prophage integrase; RSc1896; phage(gi13470710) | 4e-82 | Click |
| 3 | complement(2085812..2086027) | PHAGE_Entero_P4: transcriptional regulator; RSc1897; phage(gi9627517) | 3e-08 | Click |
| 4 | complement(2086024..2088732) | PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp40; RSc1898; phage(gi17313257) | 0.0 | Click |
| 5 | complement(2088787..2088993) | PHAGE_Ralsto_phiRSA1: hypothetical protein RSc1899-like; RSc1899; phage(gi145708118) | 2e-29 | Click |
| 6 | complement(2088986..2089228) | PHAGE_Ralsto_phiRSA1: transmembrane protein; RSc1900; phage(gi145708117) | 4e-36 | Click |
| 7 | complement(2089228..2089440) | PHAGE_Ralsto_phiRSA1: transmembrane protein; RSc1901; phage(gi145708116) | 4e-09 | Click |
| 8 | complement(2089437..2089604) | PHAGE_Ralsto_phiRSA1: hypothetical protein RSc1902-like; RSc1902; phage(gi145708115) | 3e-16 | Click |
| 9 | complement(2089601..2089834) | PHAGE_Ralsto_phiRSA1: hypothetical protein RSc1903-like; RSc1903; phage(gi145708114) | 3e-14 | Click |
| 10 | complement(2089949..2090197) | PHAGE_Ralsto_phiRSA1: phage transcription activator Org/Delta; RSc1904; phage(gi145708112) | 2e-35 | Click |
| 11 | complement(2090194..2090367) | PHAGE_Burkho_KS5: gp9; RSc1905; phage(gi327198007) | 4e-19 | Click |
| 12 | complement(2090484..2090645) | hypothetical protein; RSc1906 | N/A | Click |
| 13 | 2090747..2091268 | PHAGE_Ralsto_phiRSA1: putative phage DNA-binding protein; RSc1907; phage(gi145708109) | 3e-21 | Click |
| 14 | 2091562..2091765 | signal peptide protein; RSc1908 | N/A | Click |
| 15 | complement(2091794..2091856) | hypothetical protein; RSc1909 | N/A | Click |
| 16 | complement(2091938..2092489) | hypothetical protein; RSc1910 | N/A | Click |
| 17 | complement(2092493..2092852) | PHAGE_Burkho_KL3: gp28; RSc1911; phage(gi327198073) | 2e-12 | Click |
| 18 | complement(2092849..2093973) | PHAGE_Ralsto_phiRSA1: bacteriophage gpD; RSc1912; phage(gi145708106) | 0.0 | Click |
| 19 | complement(2093970..2094392) | PHAGE_Ralsto_phiRSA1: bacteriophage gpU; RSc1913; phage(gi145708105) | 2e-76 | Click |
| 20 | complement(2094395..2097058) | PHAGE_Ralsto_phiRSA1: bacteriophage tail protein gpT; RSc1914; phage(gi145708104) | 0.0 | Click |
| 21 | complement(2097055..2097156) | phage-like protein; RSc1915 | N/A | Click |
| 22 | complement(2097153..2097509) | PHAGE_Ralsto_phiRSA1: bacteriophage gpE; RSc1916; phage(gi145708103) | 1e-59 | Click |
| 23 | complement(2097555..2098064) | PHAGE_Ralsto_phiRSA1: putative tail tube protein gpFII; RSc1917; phage(gi145708102) | 2e-94 | Click |
| 24 | complement(2098096..2099271) | PHAGE_Ralsto_phiRSA1: major tail seath protein gpFI; RSc1918; phage(gi145708101) | 0.0 | Click |
| 25 | complement(2099365..2099829) | PHAGE_Ralsto_phiRSA1: hypothetical protein RPRSA1_gp26; RSc1919; phage(gi145708100) | 5e-78 | Click |
| 26 | complement(2099826..2100578) | PHAGE_Ralsto_phiRSA1: tail fiber assembly-like protein; RSc1920; phage(gi145708099) | 8e-136 | Click |
| 27 | complement(2100591..2102255) | PHAGE_Ralsto_phiRSA1: tail fiber protein gpH; RSc1921; phage(gi145708097) | 0.0 | Click |
| 28 | complement(2102262..2102879) | PHAGE_Ralsto_phiRSA1: phage tail protein gpI; RSc1922; phage(gi145708096) | 2e-110 | Click |
| 29 | complement(2102872..2103780) | PHAGE_Ralsto_phiRSA1: baseplate J-like protein; RSc1923; phage(gi145708095) | 7e-159 | Click |
| 30 | complement(2103783..2104130) | PHAGE_Ralsto_phiRSA1: gpW/gp25 family protein; RSc1924; phage(gi145708094) | 2e-57 | Click |
| 31 | complement(2104127..2104744) | PHAGE_Ralsto_phiRSA1: baseplate assembly protein V; RSc1925; phage(gi145708093) | 1e-113 | Click |
| 32 | 2105007..2105702 | putative phage-related transmembrane protein; RSc1926 | N/A | Click |
| 33 | 2105780..2106232 | hypothetical protein; RSc1927 | N/A | Click |
| 34 | complement(2106254..2106700) | PHAGE_Ralsto_phiRSA1: tail completion protein gpS; RSc1928; phage(gi145708091) | 3e-66 | Click |
| 35 | complement(2106697..2107131) | PHAGE_Ralsto_phiRSA1: tail completion protein-like protein; RSc1929; phage(gi145708090) | 5e-78 | Click |
| 36 | complement(2107128..2107628) | PHAGE_Ralsto_phiRSA1: signal peptide protein; RSc1930; phage(gi145708089) | 1e-82 | Click |
| 37 | complement(2107625..2108431) | PHAGE_Ralsto_phiRSA1: hypothetical protein RPRSA1_gp14; RSc1931; phage(gi145708088) | 4e-149 | Click |
| 38 | complement(2108428..2108742) | PHAGE_Ralsto_phiRSA1: phage-related transmembrane protein; RSc1932; phage(gi145708087) | 1e-52 | Click |
| 39 | complement(2108739..2109143) | PHAGE_Ralsto_phiRSA1: phage-related transmembrane protein; RSc1933; phage(gi145708086) | 2e-65 | Click |
| 40 | complement(2109159..2109365) | PHAGE_Ralsto_phiRSA1: phage tail X; RSc1934; phage(gi145708085) | 2e-33 | Click |
| 41 | complement(2109365..2109844) | PHAGE_Ralsto_phiRSA1: head completion/stabilization protein L; RSc1935; phage(gi145708084) | 2e-88 | Click |
| 42 | complement(2109941..2110663) | PHAGE_Ralsto_phiRSA1: terminase; RSc1936; phage(gi145708083) | 5e-130 | Click |
| 43 | complement(2110660..2111676) | PHAGE_Ralsto_phiRSA1: P2 family phage major capsid protein; RSc1937; phage(gi145708082) | 2e-174 | Click |
| 44 | complement(2111730..2112569) | PHAGE_Ralsto_phiRSA1: phage capsid scaffolding protein; RSc1938; phage(gi145708081) | 6e-148 | Click |
| 45 | 2112711..2114231 | PHAGE_Ralsto_phiRSA1: terminase; RSc1939; phage(gi145708080) | 0.0 | Click |
| 46 | 2114222..2114491 | PHAGE_Ralsto_phiRSA1: terminase; RSc1940; phage(gi145708080) | 4e-45 | Click |
| 47 | 2114488..2115573 | PHAGE_Ralsto_phiRSA1: bacteriophage gpQ; RSc1941; phage(gi145708079) | 0.0 | Click |
| 48 | 2125140..2125157 | attR CCCCTCTCTCCGCCAGGA | N/A | Click |
Region 4, total : 9 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 2451752..2452501 | PHAGE_Plankt_PaV_LD: ABC transporter; RSc2260; phage(gi371496158) | 1e-34 | Click |
| 2 | complement(2452605..2453531) | putative amino-acid-binding periplasmic (PBP) ABC transporter protein; RSc2261 | N/A | Click |
| 3 | complement(2453602..2454879) | D-amino acid dehydrogenase small subunit; RSc2262 | N/A | Click |
| 4 | 2455243..2456418 | PHAGE_Equid_8: envelope glycoprotein J; RSc2263; phage(gi386522795) | 1e-06 | Click |
| 5 | 2456458..2456610 | lipoprotein; RSc2264 | N/A | Click |
| 6 | complement(2456674..2457483) | PROPHAGE_Ralsto_GMI1000: isrso11-transposase orfb protein; RSc2265; phage(gi17546155) | 8e-154 | Click |
| 7 | complement(2457507..2457935) | PROPHAGE_Ralsto_GMI1000: ISRSO11-transposase ORFA protein; RSc2266; phage(gi17546156) | 9e-79 | Click |
| 8 | complement(2458072..2458962) | PROPHAGE_Escher_CFT073: transposase insF; RSc2267; phage(gi26249410) | 8e-65 | Click |
| 9 | complement(2458959..2459252) | PHAGE_Entero_Sf6: gene 56 protein; RSc2268; phage(gi41057344) | 2e-08 | Click |
Region 5, total : 24 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(3483721..3485364) | PHAGE_Macaci_4: LF3; RSc3222; phage(gi51518075) | 9e-05 | Click |
| 2 | 3484458..3484472 | attL CCTCGCGCGAATTGC | N/A | Click |
| 3 | 3485835..3486164 | hypothetical protein; RSc3223 | N/A | Click |
| 4 | complement(3486222..3486521) | hypothetical protein; RSc3224 | N/A | Click |
| 5 | complement(3486521..3486787) | hypothetical protein; RSc3225 | N/A | Click |
| 6 | complement(3486842..3487225) | hypothetical protein; RSc3226 | N/A | Click |
| 7 | complement(3487218..3487427) | hypothetical protein; RSc3227 | N/A | Click |
| 8 | complement(3487429..3487893) | PHAGE_Mycoba_Rosebush: gp9; RSc3228; phage(gi29566202) | 1e-06 | Click |
| 9 | complement(3488036..3490315) | PHAGE_Bacill_phi105: hypothetical protein phi105_42; RSc3229; phage(gi22855035) | 8e-81 | Click |
| 10 | complement(3490312..3490572) | hypothetical protein; RSc3230 | N/A | Click |
| 11 | complement(3490569..3491327) | PHAGE_Salico_CGphi29: hypothetical protein; RSc3231; phage(gi472340157) | 5e-14 | Click |
| 12 | complement(3491314..3491862) | PHAGE_Synech_S_CBS4: HNH endonuclease; RSc3232; phage(gi374531811) | 4e-22 | Click |
| 13 | complement(3491862..3492374) | hypothetical protein; RSc3233 | N/A | Click |
| 14 | complement(3492382..3493029) | hypothetical protein; RSc3234 | N/A | Click |
| 15 | complement(3493026..3493931) | PHAGE_Salico_CGphi29: hypothetical protein; RSc3235; phage(gi472340162) | 1e-12 | Click |
| 16 | complement(3493903..3494454) | PHAGE_Xantho_CP2: hypothetical protein; RSc3236; phage(gi448245206) | 7e-23 | Click |
| 17 | complement(3494451..3494933) | hypothetical protein; RSc3237 | N/A | Click |
| 18 | complement(3494944..3495207) | hypothetical protein; RSc3238 | N/A | Click |
| 19 | 3495435..3495896 | putative excisionase protein; RSc3239 | N/A | Click |
| 20 | 3495946..3498183 | hypothetical protein; RSc3240 | N/A | Click |
| 21 | complement(3498814..3500148) | ISRSO13-transposase protein; RSc3242 | N/A | Click |
| 22 | complement(3501035..3501322) | hypothetical protein; RSc3244 | N/A | Click |
| 23 | complement(3501322..3502260) | hypothetical protein; RSc3245 | N/A | Click |
| 24 | 3502366..3502815 | putative bacteriophage-related protein; RSc3246 | N/A | Click |
| 25 | 3502610..3502624 | attR CCTCGCGCGAATTGC | N/A | Click |
| 26 | 3502812..3504200 | PHAGE_Bacill_BMBtp2: resolvase; RSc3247; phage(gi431809469) | 3e-40 | Click |