| Definition | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chromosome, complete genome. |
|---|---|
| Accession | NC_003197 |
| Length | 4,857,432 |
Legend
| Hits against Virus and prophage DB | |
| Hits against Bacterial DB or GenBank file |
Region 1, total : 41 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(960294..961025) | PHAGE_Cafete_BV_PW1: putative ABC-type amino acid transporter; STM0890; phage(gi310831221) | 6e-07 | Click |
| 2 | complement(961043..961771) | PHAGE_Plankt_PaV_LD: ABC transporter; STM0891; phage(gi371496158) | 3e-30 | Click |
| 3 | complement(962001..962516) | lipoprotein; STM0892 | N/A | Click |
| 4 | 962333..962344 | attL CGGCGATATCAT | N/A | Click |
| 5 | complement(962612..963937) | PHAGE_Salmon_Fels_1: putative bacteriophage integrase; STM0893; phage(gi169257156) | 0.0 | Click |
| 6 | complement(963965..964207) | PHAGE_Salmon_Fels_1: putative bacteriophage excisionase; STM0894; phage(gi169257157) | 5e-44 | Click |
| 7 | complement(964215..964361) | PHAGE_Salmon_Fels_1: hypothetical protein STM0895.1n.Fels1; STM0895.1n; phage(gi169257158) | 2e-25 | Click |
| 8 | complement(964573..964881) | PHAGE_Salmon_Fels_1: hypothetical protein STM0895.Fels1; STM0895; phage(gi169257160) | 3e-53 | Click |
| 9 | complement(965341..965733) | PHAGE_Salmon_Fels_1: hypothetical protein STM0896.Fels1; STM0896; phage(gi169257163) | 2e-70 | Click |
| 10 | complement(966309..966725) | PHAGE_Salmon_Fels_1: hypothetical protein STM0898.3n.Fels1; STM0897; phage(gi169257166) | 3e-63 | Click |
| 11 | complement(967911..968606) | PHAGE_Salmon_Fels_1: putative transcriptional regulator (repressor); STM0898; phage(gi169257171) | 1e-127 | Click |
| 12 | 968719..968973 | PHAGE_Salmon_Fels_1: putative transcriptional regulator (cro analog); STM0898A; phage(gi169257172) | 1e-43 | Click |
| 13 | 969473..969841 | PHAGE_Salmon_Fels_1: hypothetical protein STM0899.Fels1; STM0899; phage(gi169257174) | 4e-65 | Click |
| 14 | 969999..971582 | PHAGE_Salmon_Fels_1: putative helicase; STM0900; phage(gi169257175) | 0.0 | Click |
| 15 | 971579..972547 | PHAGE_Salmon_Fels_1: putative bacteriophage DNA primase; STM0901; phage(gi169257176) | 0.0 | Click |
| 16 | 972547..973407 | PHAGE_Salmon_Fels_1: hypothetical protein STM0902.Fels1; STM0902; phage(gi169257177) | 8e-168 | Click |
| 17 | 973404..974219 | PHAGE_Salmon_Fels_1: bacteriophage antitermination protein Q; STM0903; phage(gi169257178) | 2e-158 | Click |
| 18 | complement(974374..974766) | PHAGE_Salmon_Fels_1: hypothetical protein STM0904.Fels1; STM0904; phage(gi169257179) | 3e-77 | Click |
| 19 | 975824..976222 | PHAGE_Salmon_Fels_1: hypothetical protein STM0906.1n.Fels1; STM0905; phage(gi169257180) | 1e-65 | Click |
| 20 | 976812..977156 | PHAGE_Salmon_Fels_1: bacteriophage lysis protein; holin; STM0906; phage(gi169257181) | 4e-64 | Click |
| 21 | 977159..977773 | PHAGE_Salmon_Fels_1: putative bacteriophage endolysin; STM0907; phage(gi169257182) | 2e-116 | Click |
| 22 | 977770..978255 | PHAGE_Salmon_Fels_1: Lambda Rz-like phage lysis protein; STM0908; phage(gi169257183) | 5e-87 | Click |
| 23 | 979090..979581 | PHAGE_Salmon_Fels_1: bacteriophage terminase, small subunit; STM0909; phage(gi169257184) | 2e-89 | Click |
| 24 | 979568..981676 | PHAGE_Salmon_Fels_1: bacteriophage terminase, large subunit; STM0910; phage(gi169257185) | 0.0 | Click |
| 25 | 981876..983411 | PHAGE_Salmon_Fels_1: putative bacteriophage portal protein; STM0911; phage(gi169257187) | 0.0 | Click |
| 26 | 983263..985449 | PHAGE_Salmon_Fels_1: putative Clp protease; STM0912; phage(gi169257188) | 0.0 | Click |
| 27 | complement(985463..986134) | hypothetical protein; STM0913 | N/A | Click |
| 28 | 986133..986717 | PHAGE_Salmon_Fels_1: putative bacteriophage tail component; Lambda gpZ homolog; STM0914; phage(gi169257191) | 5e-106 | Click |
| 29 | 986714..987115 | PHAGE_Salmon_Fels_1: putative bacteriophage minor tail protein; Lambda gpU homolog; STM0915; phage(gi169257192) | 1e-73 | Click |
| 30 | 987126..987869 | PHAGE_Salmon_Fels_1: putative bacteriophage major tail protein; Lambda gpV homolog; STM0916; phage(gi169257193) | 4e-139 | Click |
| 31 | 987914..988318 | PHAGE_Salmon_Fels_1: putative bacteriophage minor tail protein; Lambda gpG homolog; STM0916.1N; phage(gi169257194) | 4e-72 | Click |
| 32 | 988336..988653 | PHAGE_Salmon_Fels_1: putative minor tail protein; STM0917; phage(gi169257195) | 3e-55 | Click |
| 33 | 988625..991786 | PHAGE_Salmon_Fels_1: putative bacteriophage tail tape measure protein; Lambda gpH homolog; STM0918; phage(gi169257196) | 0.0 | Click |
| 34 | 991786..992115 | PHAGE_Salmon_Fels_1: putative bacteriophage minor tail protein; Lambda gpM homolog; STM0919; phage(gi169257197) | 1e-60 | Click |
| 35 | 992242..992760 | PHAGE_Salmon_Fels_1: putative Lom-like outer membrane protein; STM0920; phage(gi169257198) | 5e-96 | Click |
| 36 | 992892..993587 | PHAGE_Salmon_Fels_1: putative bacteriophage minor tail protein; Lambda gpL homolog; STM0921; phage(gi169257199) | 2e-134 | Click |
| 37 | 993599..994333 | PHAGE_Salmon_Fels_1: putative bacteriophage tail assembly protein; Lambda gpK homolog; STM0922; phage(gi169257200) | 2e-148 | Click |
| 38 | 994231..994908 | PHAGE_Salmon_Fels_1: putative bacteriophage tail assembly protein I; Lambda gpI homolog; STM0923; phage(gi169257201) | 1e-124 | Click |
| 39 | complement(994962..995486) | PHAGE_Salmon_Fels_1: hypothetical bacteriophage protein; STM0924; phage(gi169257202) | 2e-100 | Click |
| 40 | 995631..999026 | PHAGE_Salmon_Fels_1: putative bacteriophage host-specificity protein; Lambda gpJ homolog; STM0925.S; phage(gi169257203) | 0.0 | Click |
| 41 | 997055..997066 | attR CGGCGATATCAT | N/A | Click |
| 42 | 999070..1001442 | PHAGE_Salmon_Fels_1: putative bacteriophage tail fiber protein; Lambda gpN homolog; STM0926; phage(gi169257204) | 0.0 | Click |
| 43 | 1001442..1002017 | PHAGE_Salmon_Fels_1: putative bacteriophage tail assembly protein; STM0927; phage(gi169257205) | 8e-111 | Click |
Region 2, total : 9 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1001531..1001543 | attL GTATATCCCGCCG | N/A | Click |
| 2 | 1015860..1017518 | PHAGE_Entero_P2: Old; STM0939; phage(gi9630369) | 8e-06 | Click |
| 3 | complement(1017515..1018483) | VirK-like protein; STM0940 | N/A | Click |
| 4 | 1018611..1019729 | PHAGE_Cronob_ENT47670: putative tail protein; STM0941; phage(gi431810494) | 4e-05 | Click |
| 5 | 1019726..1021672 | PHAGE_Plankt_PaV_LD: ABC transporter; STM0942; phage(gi371496158) | 6e-41 | Click |
| 6 | complement(1021802..1022023) | PHAGE_Lactoc_bIL312: Csp; STM0943; phage(gi13095918) | 5e-14 | Click |
| 7 | 1022347..1022667 | PHAGE_Cronob_vB_CsaM_GAP32: ATP-dependent Clp protease; STM0944; phage(gi414087232) | 3e-05 | Click |
| 8 | 1022698..1024974 | PROPHAGE_Escher_EDL933: ATP-dependent Clp protease ATP-binding subunit; STM0945; phage(gi15800640) | 0.0 | Click |
| 9 | 1025166..1025624 | PHAGE_Hypert_Archaeal_Virus_2: IS element Dka2 orfA; STM0946; phage(gi300116744) | 5e-16 | Click |
| 10 | complement(1026087..1026770) | PROPHAGE_Escher_CFT073: transposase insF; STM0947; phage(gi26249410) | 1e-31 | Click |
| 11 | 1036138..1036150 | attR GTATATCCCGCCG | N/A | Click |
Region 3, total : 51 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1098179..1098193 | attL TTATAAAAATGTAGC | N/A | Click |
| 2 | complement(1098228..1099520) | PHAGE_Gifsy_2: bacteriophage integrase; STM1005; phage(gi169257268) | 0.0 | Click |
| 3 | complement(1099565..1099813) | PHAGE_Gifsy_2: bacteriophage excisionase; STM1006; phage(gi169257269) | 1e-43 | Click |
| 4 | complement(1099854..1100093) | PHAGE_Gifsy_2: hypothetical protein STM1007.Gifsy2; STM1007; phage(gi169257270) | 8e-40 | Click |
| 5 | complement(1100136..1101245) | PHAGE_Gifsy_2: conserved hypothetical bacteriophage protein; STM1008.S; phage(gi169257271) | 0.0 | Click |
| 6 | complement(1101256..1104141) | PHAGE_Gifsy_2: putatitive bacteriophage exodeoxyribonuclease VIII; STM1009; phage(gi169257272) | 0.0 | Click |
| 7 | complement(1104268..1104567) | PHAGE_Gifsy_2: hypothetical protein STM1010.Gifsy2; STM1010; phage(gi169257273) | 3e-40 | Click |
| 8 | complement(1104589..1104747) | PHAGE_Gifsy_2: hypothetical protein STM1010.1n.Gifsy2; STM1010.1n; phage(gi169257274) | 1e-25 | Click |
| 9 | complement(1104740..1105000) | PHAGE_Gifsy_2: hypothetical protein STM1010.2n.Gifsy2; STM1011; phage(gi169257275) | 2e-15 | Click |
| 10 | complement(1105050..1105460) | PHAGE_Gifsy_2: putative bacteriophage regulatory protein; repressor; Lambda gpCI analog; STM1012; phage(gi169257276) | 7e-74 | Click |
| 11 | 1105785..1106159 | PHAGE_Gifsy_2: bacteriophage transcriptional activator; Lambda gpCII analog; STM1013; phage(gi169257278) | 1e-54 | Click |
| 12 | 1106244..1107227 | PHAGE_Gifsy_2: bacteriophage DNA replication protein; Lambda gpo homolog; STM1014; phage(gi169257279) | 0.0 | Click |
| 13 | 1107230..1107979 | PHAGE_Gifsy_2: bacteriophage DNA replication protein; STM1015; phage(gi169257280) | 1e-141 | Click |
| 14 | 1107990..1108337 | PHAGE_Gifsy_2: hypothetical protein STM1016.Gifsy2; STM1016; phage(gi169257281) | 5e-60 | Click |
| 15 | 1108334..1108645 | PHAGE_Gifsy_2: conserved hypothetical bacteriophage protein; STM1017; phage(gi169257282) | 8e-53 | Click |
| 16 | 1108723..1109013 | PHAGE_Gifsy_2: hypothetical protein STM1019.1n.Gifsy2; STM1018; phage(gi169257283) | 3e-47 | Click |
| 17 | 1109305..1109538 | PHAGE_Gifsy_2: bacteriophage damage-inducible protein DinI; STM1019; phage(gi169257284) | 8e-39 | Click |
| 18 | 1109954..1110556 | PHAGE_Gifsy_2: hypothetical protein STM1020.Gifsy2; STM1020; phage(gi169257286) | 3e-111 | Click |
| 19 | 1110765..1111376 | PHAGE_Gifsy_2: NinG; STM1021; phage(gi169257288) | 1e-116 | Click |
| 20 | 1111373..1111519 | PHAGE_Gifsy_2: hypothetical protein STM1022.1n.Gifsy2; STM1021.1n; phage(gi169257289) | 5e-22 | Click |
| 21 | 1111509..1112306 | PHAGE_Gifsy_2: prophage antitermination protein; late gene regulator; Lamba gpQ homolog; STM1022; phage(gi169257290) | 7e-155 | Click |
| 22 | 1112373..1112690 | PHAGE_Gifsy_2: hypothetical protein STM1023.Gifsy2; STM1023; phage(gi169257291) | 2e-58 | Click |
| 23 | 1112864..1112989 | PHAGE_Gifsy_2: hypothetical protein STM1024.Gifsy2; STM1024; phage(gi169257292) | 1e-17 | Click |
| 24 | complement(1113125..1113574) | PHAGE_Gifsy_2: hypothetical protein STM1025.Gifsy2; STM1025; phage(gi169257293) | 7e-84 | Click |
| 25 | complement(1113935..1114447) | PHAGE_Gifsy_2: bacteriophage virulence determinant; GtgA; STM1026; phage(gi169257294) | 6e-98 | Click |
| 26 | 1114978..1115226 | PHAGE_Gifsy_2: bacteriophage lysis protein; holin; STM1027; phage(gi169257295) | 5e-41 | Click |
| 27 | 1115210..1115662 | PHAGE_Gifsy_2: bacteriophage lysis protein; endolysin; lysozyme; STM1028; phage(gi169257296) | 3e-83 | Click |
| 28 | 1115680..1116159 | PHAGE_Gifsy_2: bacteriophage lysis protein; Lambda gpRz homolog; STM1029; phage(gi169257297) | 1e-86 | Click |
| 29 | 1116367..1116900 | PHAGE_Gifsy_2: bacteriophage DNA packaging protein; terminase, small subunit; STM1030; phage(gi169257298) | 1e-95 | Click |
| 30 | 1116857..1118995 | PHAGE_Gifsy_2: bacteriophage DNA packaging protein; terminase, large subunit; STM1031; phage(gi169257299) | 0.0 | Click |
| 31 | 1119429..1120742 | PHAGE_Gifsy_2: bacteriophage portal protein; STM1032; phage(gi169257301) | 0.0 | Click |
| 32 | 1120666..1122747 | PHAGE_Gifsy_2: bacteriophage Clp protease involved in capsid processing; STM1033; phage(gi169257302) | 0.0 | Click |
| 33 | 1122838..1123161 | PHAGE_Gifsy_2: conserved hypothetical bacteriophage protein; STM1034; phage(gi169257303) | 4e-55 | Click |
| 34 | 1123154..1123453 | PHAGE_Gifsy_2: conserved hypothetical bacteriophage protein; STM1035; phage(gi169257304) | 6e-52 | Click |
| 35 | 1123434..1124000 | PHAGE_Gifsy_2: bacteriophage morphogenesis protein; Lambda gpZ homolog; STM1036; phage(gi169257305) | 4e-103 | Click |
| 36 | 1123997..1124398 | PHAGE_Gifsy_2: bacteriophage tail shaft stabilization protein; Lambda gpU homolog; STM1037; phage(gi169257306) | 3e-72 | Click |
| 37 | 1124410..1125159 | PHAGE_Gifsy_2: bacteriophage major tail protein; Lambda gpV homolog; STM1038; phage(gi169257307) | 2e-141 | Click |
| 38 | 1125205..1125603 | PHAGE_Gifsy_2: bacteriophage tail assembly chaperone; Lambda gpG homolog; STM1039; phage(gi169257308) | 9e-70 | Click |
| 39 | 1125600..1125929 | PHAGE_Gifsy_2: bacteriophage tail assembly chapterone - part of G+G' frameshift hybrid protein ; Lambda gpT homolog; STM1040; phage(gi169257309) | 7e-57 | Click |
| 40 | 1126009..1128996 | PHAGE_Gifsy_2: bacteriophage tail tape measure protein; minor tail protein; Lambda gpH homolog; STM1041; phage(gi169257310) | 0.0 | Click |
| 41 | 1128993..1129325 | PHAGE_Gifsy_2: bacteriophage tail tip assembly protein; Lambda gpM homolog; STM1042; phage(gi169257311) | 2e-61 | Click |
| 42 | 1129424..1129921 | PHAGE_Gifsy_2: bacteriophage virulence determinant; Lom homolog; STM1043; phage(gi169257312) | 3e-93 | Click |
| 43 | complement(1130053..1130586) | PHAGE_Gifsy_2: bacteriophage virulence determinant; superoxide dismutase precursor; STM1044; phage(gi169257313) | 3e-102 | Click |
| 44 | 1130676..1131371 | PHAGE_Gifsy_2: bacteriophage tail tip assembly protein; Lambda gpL homolog; STM1045; phage(gi169257314) | 1e-135 | Click |
| 45 | 1131381..1132118 | PHAGE_Gifsy_2: bacteriophage tail tip assembly protein; Lambda gpK homolog; STM1046; phage(gi169257315) | 3e-152 | Click |
| 46 | 1132016..1132720 | PHAGE_Gifsy_2: bacteriophage tail tip assembly protein; Lambda gpI homolog; STM1047; phage(gi169257316) | 6e-129 | Click |
| 47 | 1132792..1135239 | PHAGE_Gifsy_2: bacteriophage tail fiber (host specificity) protein; Lambda gp J homolog; STM1048; phage(gi169257317) | 0.0 | Click |
| 48 | 1135266..1136141 | PHAGE_Gifsy_2: pseudogene; bacteriophage tail fiber C-terminus (Host specificity); Lambda gpJ homolog; STM1048.1N; phage(gi169257318) | 3e-165 | Click |
| 49 | 1136476..1138914 | PHAGE_Gifsy_2: bacteriophage side tail fiber protein; Lambda gpStf (gpN) homolog; STM1049; phage(gi169257320) | 0.0 | Click |
| 50 | 1138914..1139495 | PHAGE_Gifsy_2: bacteriophage side tail fiber assembly protein; Lambda gpTfa analog; STM1050; phage(gi169257321) | 4e-111 | Click |
| 51 | 1139971..1140939 | PHAGE_Gifsy_2: prophage virulence determinant; secreted effector protein; STM1051; phage(gi169257322) | 0.0 | Click |
| 52 | complement(1141587..1142213) | PHAGE_Pseudo_F116: hypothetical protein F116p67; STM1053; phage(gi56692976) | 7e-31 | Click |
| 53 | 1144020..1144034 | attR TTATAAAAATGTAGC | N/A | Click |
Region 4, total : 53 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 2728976..2730469 | PHAGE_Gifsy_1: leucine-rich repeat protein; STM2584; phage(gi169257209) | 0.0 | Click |
| 2 | 2731356..2731901 | PHAGE_Gifsy_1: hypothetical protein STM2585.Gifsy1; STM2585; phage(gi169257210) | 1e-101 | Click |
| 3 | 2732086..2732097 | attL ACAAAAACCATG | N/A | Click |
| 4 | 2733013..2733240 | PHAGE_Gifsy_1: PagK-like protein; STM2585A; phage(gi169257211) | 9e-41 | Click |
| 5 | complement(2733337..2733915) | PHAGE_Gifsy_1: bacteriophage side tail fiber assembly factor & structural component; Lambda gpTfa homolog; STM2586; phage(gi169257212) | 1e-110 | Click |
| 6 | complement(2733905..2734729) | PHAGE_Gifsy_1: conserved hypothetical protein; contains pfam01661, Macro, Macro domain; STM2587; phage(gi169257213) | 2e-161 | Click |
| 7 | complement(2734726..2737098) | PHAGE_Gifsy_1: bacteriophage side tail fiber protein; Lambda gpSft (gpN) homolog; STM2588; phage(gi169257214) | 0.0 | Click |
| 8 | complement(2737516..2740794) | PHAGE_Gifsy_1: bacteriophage host specificity protein; tail fiber; Lambda gpJ homolog; STM2589; phage(gi169257216) | 0.0 | Click |
| 9 | complement(2740856..2741503) | PHAGE_Gifsy_1: bacteriophage tail tip assembly protein; Lambda gpI homolog; STM2590; phage(gi169257217) | 6e-121 | Click |
| 10 | complement(2741401..2742000) | PHAGE_Gifsy_1: bacteriophage tail tip assembly protein; Lambda gpK homolog; STM2591; phage(gi169257218) | 5e-124 | Click |
| 11 | complement(2742145..2742843) | PHAGE_Gifsy_1: bacteriophage tail tip assembly protein; Lambda gpL homolog; STM2592; phage(gi169257219) | 8e-136 | Click |
| 12 | complement(2742853..2743182) | PHAGE_Gifsy_1: bacteriophage tail tip assembly protein; Lambda gpM homolog; STM2593; phage(gi169257220) | 2e-61 | Click |
| 13 | complement(2743185..2746280) | PHAGE_Gifsy_1: bacteriophage tail tape measure protein; minor tail protein; Lambda gpH homolog; STM2594; phage(gi169257221) | 0.0 | Click |
| 14 | complement(2746252..2746590) | PHAGE_Gifsy_1: part of bacteriophage tail assembly chaperone gpG by translational frameshifting; Lambda gpT homolog; STM2595; phage(gi169257222) | 3e-61 | Click |
| 15 | complement(2746587..2746982) | PHAGE_Gifsy_1: bacteriophage tail assembly chaperone; Lambda gpG homolog; STM2596; phage(gi169257223) | 2e-70 | Click |
| 16 | complement(2747033..2747779) | PHAGE_Gifsy_1: bacteriophage major tail subunit; Lambda gpV homolog; STM2597; phage(gi169257224) | 5e-138 | Click |
| 17 | complement(2747787..2748188) | PHAGE_Gifsy_1: bacteriophage tail shaft stabilization protein; Lambda gpU homolog; STM2598; phage(gi169257225) | 2e-73 | Click |
| 18 | 2748177..2749427 | PHAGE_Gifsy_1: transposase; STM2599; phage(gi169257226) | 0.0 | Click |
| 19 | complement(2749476..2750054) | PHAGE_Gifsy_1: bacteriophage head-tail assembly protein; Lambda gpZ homolog; STM2600; phage(gi169257227) | 7e-104 | Click |
| 20 | complement(2750082..2750465) | PHAGE_Gifsy_1: bacteriophage minor capsid protein; forms tail attachment site on head; Lambda FII homolog; STM2601; phage(gi169257228) | 1e-68 | Click |
| 21 | complement(2750476..2750835) | PHAGE_Gifsy_1: bacteriophage accessory DNA packaging protein; Lambda FI homolog; STM2602; phage(gi169257229) | 4e-62 | Click |
| 22 | complement(2750893..2751921) | PHAGE_Gifsy_1: bacteriophage major capsid protein; Lambda gpE homolog; STM2603; phage(gi169257230) | 0.0 | Click |
| 23 | complement(2751976..2752323) | PHAGE_Gifsy_1: bacteriophage head decoration protein; Lambda gpD homolog; STM2604; phage(gi169257231) | 3e-61 | Click |
| 24 | complement(2752336..2753832) | PHAGE_Gifsy_1: bacteriophage prohead protease; Lambda gpC homolog; STM2605; phage(gi169257232) | 0.0 | Click |
| 25 | complement(2753822..2755402) | PHAGE_Gifsy_1: bacteriophage portal protein; Lambda gpB homolog; STM2606; phage(gi169257233) | 0.0 | Click |
| 26 | complement(2755399..2755602) | PHAGE_Gifsy_1: bacteriophage head-to-tail joining protein; adapter between portal and gpFII; Lambda gpW homolog; STM2607; phage(gi169257234) | 2e-31 | Click |
| 27 | complement(2755586..2757517) | PHAGE_Gifsy_1: DNA packaging protein; large terminase subunit; Lambda gpA homolog; STM2608; phage(gi169257235) | 0.0 | Click |
| 28 | complement(2757539..2758033) | PHAGE_Gifsy_1: DNA packaging protein; small terminase subunit; Lambda Nu1 homolog; STM2609; phage(gi169257236) | 8e-89 | Click |
| 29 | 2758320..2758721 | PHAGE_Gifsy_1: hypothetical protein STM2610.Gifsy1; STM2610; phage(gi169257237) | 1e-71 | Click |
| 30 | complement(2758957..2759430) | PHAGE_Gifsy_1: bacteriophage lysis protein; Rz; STM2611.S; phage(gi169257238) | 7e-80 | Click |
| 31 | complement(2759427..2759879) | PHAGE_Gifsy_1: bacteriophage lysin protein; endolysin; STM2612; phage(gi169257239) | 2e-82 | Click |
| 32 | complement(2759863..2760192) | PHAGE_Gifsy_1: bacteriophage lysis protein; holin; STM2613; phage(gi169257240) | 5e-58 | Click |
| 33 | 2760468..2761154 | PHAGE_Gifsy_1: virulence protein GogA; STM2614; phage(gi169257241) | 2e-134 | Click |
| 34 | complement(2761646..2761722) | tRNA | N/A | Click |
| 35 | complement(2762064..2762627) | PHAGE_Gifsy_1: conserved hypothetical bacteriophage protein; STM2616; phage(gi169257243) | 2e-104 | Click |
| 36 | complement(2762900..2763577) | PHAGE_Gifsy_1: bacteriophage antiterminator protein Q; STM2617; phage(gi169257244) | 3e-130 | Click |
| 37 | complement(2763574..2763714) | PHAGE_Gifsy_1: conserved hypothetical bacteriophage protein; STM2618; phage(gi169257245) | 8e-21 | Click |
| 38 | complement(2763711..2764322) | PHAGE_Gifsy_1: NinG; STM2619; phage(gi169257246) | 5e-117 | Click |
| 39 | complement(2764531..2765133) | PHAGE_Gifsy_1: conserved hypothetical bacteriophage protein; STM2620; phage(gi169257248) | 1e-111 | Click |
| 40 | complement(2765549..2765782) | PHAGE_Gifsy_1: bacteriophage putative DNA damage-inducible protein; DinI homolog; STM2621; phage(gi169257250) | 8e-39 | Click |
| 41 | complement(2766074..2766367) | PHAGE_Gifsy_1: hypothetical protein STM2623.1n.Gifsy1; STM2622; phage(gi169257251) | 3e-47 | Click |
| 42 | complement(2766442..2766753) | PHAGE_Gifsy_1: conserved hypothetical bacteriophage protein; STM2623; phage(gi169257252) | 8e-53 | Click |
| 43 | complement(2766750..2767097) | PHAGE_Gifsy_1: hypothetical protein STM2624.Gifsy1; STM2624; phage(gi169257253) | 5e-60 | Click |
| 44 | complement(2767108..2767857) | PHAGE_Gifsy_1: bacteriophage DNA replication protein; DnaC homolog; STM2625; phage(gi169257254) | 1e-141 | Click |
| 45 | complement(2767860..2768843) | PHAGE_Gifsy_1: bacteriophage replication protein O; STM2626; phage(gi169257255) | 0.0 | Click |
| 46 | complement(2768928..2769302) | PHAGE_Gifsy_1: probable regulatory protein; transcriptional activator; lambda CII analog; STM2627; phage(gi169257256) | 9e-67 | Click |
| 47 | 2769627..2770037 | PHAGE_Gifsy_1: probable regulatory protein; putative repressor protein; helix-turn-helix motif; STM2628; phage(gi169257258) | 7e-74 | Click |
| 48 | 2770087..2770347 | PHAGE_Gifsy_1: hypothetical protein STM2630.1n.Gifsy1; STM2629; phage(gi169257259) | 2e-15 | Click |
| 49 | 2770340..2770498 | PHAGE_Gifsy_1: hypothetical protein STM2630.Gifsy1; STM2630; phage(gi169257260) | 1e-25 | Click |
| 50 | 2770520..2770870 | PHAGE_Gifsy_1: hypothetical protein STM2631.Gifsy1; STM2631; phage(gi169257261) | 6e-64 | Click |
| 51 | 2770997..2773882 | PHAGE_Gifsy_1: bacteriophage exodeoxyribonuclease VIII-like protein; STM2632; phage(gi169257262) | 0.0 | Click |
| 52 | 2773893..2775002 | PHAGE_Gifsy_1: RecT; STM2633.S; phage(gi169257263) | 0.0 | Click |
| 53 | 2775045..2775284 | PHAGE_Gifsy_1: hypothetical protein STM2634.Gifsy1; STM2634; phage(gi169257264) | 8e-40 | Click |
| 54 | 2775325..2775609 | PHAGE_Gifsy_1: hypothetical protein STM2635.Gifsy1; STM2635; phage(gi169257265) | 9e-52 | Click |
| 55 | complement(2775587..2776816) | PHAGE_Gifsy_1: bacteriophage integrase protein; STM2636; phage(gi169257266) | 0.0 | Click |
| 56 | 2776890..2776901 | attR ACAAAAACCATG | N/A | Click |
Region 5, total : 47 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 2836642..2836653 | attL GTGGTACAGCGC | N/A | Click |
| 2 | 2844265..2844311 | attL ATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAA | N/A | Click |
| 3 | complement(2844427..2844645) | PHAGE_Entero_Fels_2: P2 gpOgr-like protein (acttivation of late gene expression); STM2694; phage(gi169936018) | 3e-40 | Click |
| 4 | complement(2844714..2845814) | PHAGE_Entero_Fels_2: P2 gpD-like tail protein; STM2695; phage(gi169936019) | 0.0 | Click |
| 5 | complement(2845811..2846296) | PHAGE_Entero_Fels_2: P2 gpU-like tail protein; STM2696; phage(gi169936020) | 1e-86 | Click |
| 6 | complement(2846293..2849100) | PHAGE_Entero_Fels_2: P2 gpT-like tail protein; STM2697; phage(gi169936021) | 0.0 | Click |
| 7 | complement(2849093..2849212) | PHAGE_Entero_Fels_2: P2 gpE-like protein; STM2698; phage(gi169936022) | 3e-16 | Click |
| 8 | complement(2849227..2849529) | PHAGE_Entero_Fels_2: P2 gpE-like tail protein; STM2699; phage(gi169936023) | 4e-49 | Click |
| 9 | complement(2849584..2850099) | PHAGE_Entero_Fels_2: P2 gpFII-like protein; STM2700; phage(gi169936024) | 2e-94 | Click |
| 10 | complement(2850109..2851281) | PHAGE_Entero_Fels_2: P2 gpFI-like protein; STM2701; phage(gi169936025) | 0.0 | Click |
| 11 | complement(2851384..2851941) | PHAGE_Entero_Fels_2: DNA-invertase; STM2702; phage(gi169936026) | 3e-101 | Click |
| 12 | 2851911..2852990 | PHAGE_Entero_Fels_2: P2 gpH-like protein; STM2703; phage(gi169936027) | 0.0 | Click |
| 13 | 2852997..2853404 | PHAGE_Entero_Fels_2: P2 gpG-like protein; STM2704; phage(gi169936028) | 1e-75 | Click |
| 14 | complement(2853408..2854025) | PHAGE_Entero_Fels_2: P2 gpG-like protein; STM2705; phage(gi169936029) | 5e-114 | Click |
| 15 | complement(2853995..2855569) | PHAGE_Entero_Fels_2: P2 gpH-like protein; STM2706; phage(gi169936030) | 0.0 | Click |
| 16 | complement(2855566..2856171) | PHAGE_Entero_Fels_2: P2 gpI-like baseplate assembly protein; STM2707; phage(gi169936031) | 3e-118 | Click |
| 17 | complement(2856164..2857072) | PHAGE_Entero_Fels_2: P2 gpJ-like baseplate assembly protein; STM2708; phage(gi169936032) | 2e-165 | Click |
| 18 | complement(2857059..2857418) | PHAGE_Entero_Fels_2: P2 gpW-like baseplate protein; STM2709; phage(gi169936033) | 4e-63 | Click |
| 19 | complement(2857415..2857993) | PHAGE_Entero_Fels_2: P2 gpV-like protein; STM2710; phage(gi169936034) | 4e-112 | Click |
| 20 | complement(2858062..2858508) | PHAGE_Entero_Fels_2: P2 gpS-like tail completion protein; STM2711; phage(gi169936035) | 1e-79 | Click |
| 21 | complement(2858501..2858932) | PHAGE_Entero_Fels_2: P2 gpR-like tail completion protein; STM2712; phage(gi169936036) | 3e-78 | Click |
| 22 | complement(2858895..2859179) | PHAGE_Entero_Fels_2: P2 LysC-like protein; STM2713; phage(gi169936037) | 2e-49 | Click |
| 23 | complement(2859028..2859456) | PHAGE_Entero_Fels_2: P2 LysB-like protein; STM2714; phage(gi169936038) | 1e-74 | Click |
| 24 | complement(2859833..2860309) | PHAGE_Entero_Fels_2: endolysin; STM2715.S; phage(gi169936041) | 9e-90 | Click |
| 25 | complement(2860323..2860538) | PHAGE_Entero_Fels_2: lysis protein; STM2716; phage(gi169936042) | 3e-35 | Click |
| 26 | complement(2860542..2860745) | PHAGE_Entero_Fels_2: P2 gpX-like tail protein; STM2717; phage(gi169936043) | 1e-35 | Click |
| 27 | complement(2860745..2861209) | PHAGE_Entero_Fels_2: P2 gpL-like protein; STM2718; phage(gi169936044) | 5e-87 | Click |
| 28 | complement(2861303..2861956) | PHAGE_Entero_Fels_2: P2 gpM-like protein; STM2719; phage(gi169936045) | 3e-119 | Click |
| 29 | complement(2861960..2863042) | PHAGE_Entero_Fels_2: P2 gpN-like major capsid protein; STM2720; phage(gi169936046) | 0.0 | Click |
| 30 | complement(2863059..2863892) | PHAGE_Entero_Fels_2: P2 gpO-like protein; STM2721; phage(gi169936047) | 9e-153 | Click |
| 31 | 2864035..2865801 | PHAGE_Entero_Fels_2: P2 gpP-like protein; STM2722; phage(gi169936048) | 0.0 | Click |
| 32 | 2865801..2866841 | PHAGE_Entero_Fels_2: P2 gpQ-like protein; STM2723; phage(gi169936049) | 0.0 | Click |
| 33 | complement(2866927..2868678) | PHAGE_Entero_Fels_2: hypothetical protein STM2723.1.Fels2; STM2724; phage(gi169936050) | 0.0 | Click |
| 34 | complement(2868892..2869623) | PHAGE_Entero_Fels_2: hypothetical protein STM2726.Fels2; STM2726; phage(gi169936051) | 1e-135 | Click |
| 35 | complement(2869683..2869988) | PHAGE_Entero_Fels_2: TumB protein; STM2727; phage(gi169936052) | 2e-38 | Click |
| 36 | complement(2869927..2870115) | PHAGE_Entero_Fels_2: hypothetical protein STM2728.Fels2; STM2728; phage(gi169936053) | 2e-29 | Click |
| 37 | complement(2870268..2872697) | PHAGE_Entero_Fels_2: P2 gpA-like protein; STM2729; phage(gi169936054) | 0.0 | Click |
| 38 | complement(2872688..2873545) | PHAGE_Entero_Fels_2: DNA adenine methylase-like protein; STM2730; phage(gi169936055) | 6e-169 | Click |
| 39 | complement(2873542..2873769) | PHAGE_Entero_Fels_2: P2 gpOrf82-like protein; STM2731; phage(gi169936056) | 7e-40 | Click |
| 40 | complement(2873769..2874002) | PHAGE_Entero_Fels_2: hypothetical protein STM2732.Fels2; STM2732; phage(gi169936057) | 4e-37 | Click |
| 41 | complement(2874070..2874411) | PHAGE_Entero_Fels_2: hypothetical protein STM2733.Fels2; STM2733; phage(gi169936058) | 3e-59 | Click |
| 42 | 2874631..2875089 | hypothetical protein; STM2734 | N/A | Click |
| 43 | complement(2875037..2875270) | PHAGE_Entero_Fels_2: hypothetical protein STM2735.Fels2; STM2735; phage(gi169936060) | 4e-41 | Click |
| 44 | complement(2875278..2875787) | PHAGE_Entero_Fels_2: bacteriophage regulatory protein CII; STM2736; phage(gi169936061) | 3e-92 | Click |
| 45 | complement(2875823..2876062) | PHAGE_Entero_Fels_2: bacteriophage regulatory protein Ap1; STM2737; phage(gi169936062) | 3e-40 | Click |
| 46 | 2876179..2876811 | PHAGE_Entero_Fels_2: P2 CI-like protein; STM2738; phage(gi169936063) | 6e-116 | Click |
| 47 | 2876815..2877840 | PHAGE_Entero_Fels_2: P2 Int-like protein; STM2739; phage(gi169936064) | 0.0 | Click |
| 48 | 2877958..2878004 | attR ATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAA | N/A | Click |
| 49 | 2878169..2879233 | PROPHAGE_Entero_Fels-2: integrase-like protein; STM2740; phage(gi16766052) | 0.0 | Click |
| 50 | 2879247..2879414 | PROPHAGE_Escher_MG1655: CP4-57 prophage; integrase; STM2740.1N; phage(gi16130540) | 5e-09 | Click |
| 51 | 2885742..2885753 | attR GTGGTACAGCGC | N/A | Click |
Region 6, total : 13 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 2895768..2895785 | attL CGTCATACTTCAAGTTGC | N/A | Click |
| 2 | 2900439..2901314 | PROPHAGE_Salmon_LT2: integrase; STM2760; phage(gi16766072) | 4e-168 | Click |
| 3 | 2901480..2903354 | inner membrane protein; STM2761 | N/A | Click |
| 4 | complement(2903614..2904897) | inner membrane protein; STM2762 | N/A | Click |
| 5 | complement(2907066..2907332) | PROPHAGE_Salmon_LT2: transposase; STM2765; phage(gi16766077) | 8e-45 | Click |
| 6 | complement(2907785..2908423) | cytoplasmic protein; STM2766 | N/A | Click |
| 7 | complement(2908420..2910402) | DNA/RNA helicase; STM2767 | N/A | Click |
| 8 | 2910681..2910980 | PROPHAGE_Escher_MG1655: IS3 transposase A; STM2768; phage(gi226524700) | 2e-41 | Click |
| 9 | 2910977..2911843 | PROPHAGE_Escher_MG1655: IS3 transposase B; STM2769; phage(gi16128284) | 3e-145 | Click |
| 10 | complement(2912623..2913162) | PHAGE_Salmon_SSU5: putative repressor of phase 1 flagellin; STM2770; phage(gi390013956) | 9e-13 | Click |
| 11 | complement(2913230..2914750) | PHAGE_Escher_phiKT: tail fiber protein; STM2771; phage(gi422936632) | 1e-07 | Click |
| 12 | 2914842..2915414 | PHAGE_Escher_D108: G region invertase; STM2772; phage(gi281199698) | 4e-67 | Click |
| 13 | 2916377..2917492 | glycosyl transferase; STM2773 | N/A | Click |
| 14 | 2917573..2921226 | PHAGE_Bacill_SPBc2: ABC transporter; STM2774; phage(gi9630145) | 2e-25 | Click |
| 15 | 2928025..2928042 | attR CGTCATACTTCAAGTTGC | N/A | Click |
Region 7, total : 24 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(4417918..4418646) | PHAGE_Entero_P1: PmgQ; STM4196; phage(gi46401711) | 7e-34 | Click |
| 2 | complement(4418843..4419133) | inner membrane protein; STM4197 | N/A | Click |
| 3 | complement(4419382..4419837) | PHAGE_Haemop_SuMu: enoyl-CoA hydratase/carnithine racemase-like protein; STM4198; phage(gi418489075) | 2e-24 | Click |
| 4 | complement(4419834..4420439) | cytoplasmic protein; STM4199 | N/A | Click |
| 5 | complement(4420444..4422189) | PHAGE_Salmon_SP_004: phage tail fiber protein; STM4200; phage(gi526003631) | 3e-82 | Click |
| 6 | complement(4422192..4422824) | PHAGE_Burkho_BcepMu: gp51; STM4201; phage(gi48696961) | 4e-26 | Click |
| 7 | complement(4422817..4423932) | PHAGE_Burkho_BcepMu: gp50; STM4202; phage(gi48696960) | 2e-105 | Click |
| 8 | complement(4423923..4424282) | PHAGE_Burkho_BcepMu: gp49; STM4203; phage(gi48696959) | 1e-35 | Click |
| 9 | complement(4424446..4425993) | PHAGE_Salmon_epsilon34: GtrC; putative membrane protein; STM4204; phage(gi221328637) | 2e-59 | Click |
| 10 | complement(4425993..4426922) | PHAGE_Entero_SfV: bactoprenol glucosyltransferase; STM4205; phage(gi19549012) | 3e-152 | Click |
| 11 | complement(4426919..4427281) | PHAGE_Entero_SfV: putative flippase; STM4206; phage(gi19549013) | 8e-48 | Click |
| 12 | complement(4427609..4428331) | PHAGE_Burkho_BcepMu: gp48; STM4207; phage(gi48696958) | 2e-39 | Click |
| 13 | complement(4428341..4429384) | PHAGE_Burkho_BcepMu: gp47; STM4208; phage(gi48696957) | 1e-80 | Click |
| 14 | complement(4429372..4429581) | PHAGE_Burkho_BcepMu: gp46; STM4209; phage(gi48696956) | 9e-19 | Click |
| 15 | complement(4429581..4430534) | PHAGE_Burkho_BcepMu: gp45; STM4210; phage(gi48696955) | 2e-45 | Click |
| 16 | complement(4430534..4432888) | PHAGE_Burkho_BcepMu: gp44; STM4211; phage(gi48696954) | 1e-68 | Click |
| 17 | complement(4433440..4433964) | PHAGE_Burkho_BcepMu: gp40; STM4212; phage(gi48696950) | 1e-68 | Click |
| 18 | complement(4433964..4435391) | PHAGE_Burkho_BcepMu: gp39; STM4213; phage(gi48696949) | 0.0 | Click |
| 19 | complement(4435381..4435578) | PHAGE_Burkho_BcepMu: gp38; STM4214; phage(gi48696948) | 3e-08 | Click |
| 20 | complement(4435575..4436030) | PHAGE_Burkho_BcepMu: gp37; STM4215; phage(gi48696947) | 2e-13 | Click |
| 21 | complement(4436190..4436504) | PHAGE_Burkho_BcepMu: gp25; STM4216; phage(gi48696935) | 3e-23 | Click |
| 22 | complement(4436517..4437122) | PHAGE_Burkho_BcepMu: gp22; STM4217; phage(gi48696932) | 8e-57 | Click |
| 23 | complement(4437125..4437412) | PHAGE_Burkho_BcepMu: gp21; STM4218; phage(gi48696931) | 8e-21 | Click |
| 24 | 4437988..4438335 | PHAGE_Burkho_BcepMu: gp01; STM4219.S; phage(gi48696911) | 8e-24 | Click |