Definition Yersinia pestis CO92 chromosome, complete genome.
Accession NC_003143
Length 4,653,728
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 18 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1219762..1219775  attL    AATCAGTTTGTGTG  N/A  Click
2 1229232..1229996  PHAGE_Vibrio_VP882: putative exonuclease; YPO1082; phage(gi126010887)  4e-10  Click
3 1230109..1230185  tRNA  N/A  Click
4 complement(1230242..1231726)  putative permease; YPO1083  N/A  Click
5 complement(1232349..1233131)  PROPHAGE_Escher_CFT073: transposase/IS protein; YPO1085; phage(gi26248359)  3e-143  Click
6 complement(1233128..1234150)  PROPHAGE_Escher_CFT073: transposase; YPO1086; phage(gi26248360)  0.0  Click
7 complement(1234239..1234340)  PROPHAGE_Escher_MG1655: CP4-57 prophage; integrase; YPO1086a; phage(gi16130540)  3e-05  Click
8 1234425..1234446  attL    CTTGGACTACTACAGACACAAA  N/A  Click
9 1234752..1235063  PHAGE_Burkho_2: gp7, putative addiction module killer protein; YPO1087; phage(gi134288691)  8e-07  Click
10 1235071..1235391  PHAGE_Burkho_2: gp6, putative addiction module antidote protein; YPO1088; phage(gi134288715)  5e-08  Click
11 complement(1235740..1236828)  PHAGE_Burkho_BcepGomr: BcepGomrgp62; YPO1089; phage(gi146329974)  6e-28  Click
12 complement(1236825..1237784)  PHAGE_Entero_P4: DNA primase; YPO1090; phage(gi9627512)  8e-47  Click
13 complement(1237777..1238319)  PHAGE_Entero_phiP27: hypothetical protein P27p16; YPO1091; phage(gi18249880)  7e-07  Click
14 complement(1238512..1239408)  PROPHAGE_Salmon_LT2: integrase; YPO1092; phage(gi16766072)  4e-91  Click
15 complement(1239421..1239711)  hypothetical protein; YPO1092a  N/A  Click
16 complement(1239803..1239976)  hypothetical protein; YPO1094  N/A  Click
17 1240207..1240434  hypothetical protein; YPO1095  N/A  Click
18 complement(1240596..1242266)  PHAGE_Staphy_phiNM3: hypothetical protein; YPO1096; phage(gi118725072)  8e-06  Click
19 complement(1242317..1243405)  hypothetical protein; YPO1097  N/A  Click
20 complement(1243484..1244683)  PROPHAGE_Escher_MG1655: CP4-57 prophage; integrase; YPO1098; phage(gi16130540)  7e-131  Click
21 1244779..1244800  attR    CTTGGACTACTACAGACACAAA  N/A  Click
22 complement(1244907..1245365)  PROPHAGE_Salmon_Ty2: transposase; YPO1099; phage(gi29143766)  5e-84  Click
23 1253172..1253185  attR    AATCAGTTTGTGTG  N/A  Click
Region 2, total : 16 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1398814..1399104  PHAGE_Salmon_SPN3UB: hypothetical protein; YPO1239; phage(gi423262443)  7e-16  Click
2 1399150..1399767  putative ATP-binding protein; YPO1240  N/A  Click
3 1399772..1399966  PHAGE_Entero_SfV: hypothetical protein SfVp10; YPO1241; phage(gi19549000)  1e-06  Click
4 1399963..1401471  PHAGE_Entero_SfV: tail sheath protein; YPO1242; phage(gi19549001)  4e-107  Click
5 1401493..1401861  PHAGE_Entero_SfV: hypothetical protein SfVp12; YPO1243; phage(gi19549002)  2e-10  Click
6 1401863..1402162  hypothetical protein; YPO1244  N/A  Click
7 1402283..1403776  putative bacteriophage coat protein; YPO1245  N/A  Click
8 1404043..1405449  PHAGE_Entero_SfV: tail/DNA circulation protein; YPO1246; phage(gi19549005)  3e-20  Click
9 1405446..1406501  PHAGE_Entero_SfV: tail protein; YPO1247; phage(gi19549006)  3e-32  Click
10 1406517..1407113  PHAGE_Entero_SfV: tail protein; YPO1248; phage(gi19549007)  2e-17  Click
11 1407110..1407565  PHAGE_Entero_SfV: tail protein; YPO1249; phage(gi19549008)  5e-14  Click
12 1407569..1408705  PHAGE_Entero_SfV: tail protein; YPO1250; phage(gi19549009)  8e-33  Click
13 1408702..1408962  PHAGE_Salmon_ST64B: putative tail protein; YPO1250a; phage(gi23505467)  5e-05  Click
14 1408959..1409306  PHAGE_Entero_SfV: tail protein; YPO1251; phage(gi19548988)  7e-11  Click
15 1409403..1410182  PHAGE_Entero_HK97: tail fiber; YPO1252; phage(gi9634179)  8e-54  Click
16 1410480..1411220  PHAGE_Acanth_moumouvirus: putative glucosamine-fructose-6-phosphate aminotransferase; YPO1253; phage(gi441432573)  3e-05  Click
Region 3, total : 15 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2115553..2115566  attL    AATTGCCTGTTTTT  N/A  Click
2 complement(2115626..2116141)  PHAGE_Pectob_ZF40: putative integrase; YPO1868; phage(gi422936642)  6e-63  Click
3 2116252..2116479  PHAGE_Salmon_SPN9CC: replicative DNA helicase; YPO1869; phage(gi389060513)  2e-14  Click
4 2116848..2116994  hypothetical protein; YPO1870  N/A  Click
5 complement(2117816..2117974)  hypothetical protein; YPO1871  N/A  Click
6 complement(2118003..2118347)  hypothetical protein; YPO1872  N/A  Click
7 complement(2118567..2119526)  PHAGE_Lactob_phiAT3: putative transposase B; YPO1873; phage(gi48697274)  6e-15  Click
8 complement(2119598..2120044)  hypothetical protein; YPO1874  N/A  Click
9 complement(2120128..2120268)  PHAGE_Entero_PsP3: gp21; YPO1875; phage(gi41057373)  1e-13  Click
10 complement(2120433..2120687)  hypothetical protein; YPO1876  N/A  Click
11 complement(2120692..2120997)  hypothetical protein; YPO1877  N/A  Click
12 complement(2120994..2121209)  hypothetical protein; YPO1878  N/A  Click
13 complement(2121644..2121931)  PHAGE_Aeromo_vB_AsaM_56: putative tail-fiber protein; YPO1879; phage(gi422937565)  7e-06  Click
14 complement(2121948..2122247)  PHAGE_Entero_PsP3: gp16; YPO1880; phage(gi41057368)  8e-25  Click
15 complement(2122244..2122603)  PHAGE_Entero_PsP3: gp15; YPO1881; phage(gi41057367)  9e-19  Click
16 2122887..2123177  PHAGE_Burkho_phiE202: gp7, pANL12; YPO1882; phage(gi134288781)  3e-07  Click
17 2124318..2124331  attR    AATTGCCTGTTTTT  N/A  Click
Region 4, total : 51 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2364324..2365346  PROPHAGE_Escher_CFT073: transposase; YPO2085; phage(gi26248360)  0.0  Click
2 2365343..2366125  PROPHAGE_Escher_CFT073: transposase/IS protein; YPO2086; phage(gi26248359)  3e-143  Click
3 complement(2366293..2366553)  PHAGE_Gifsy_2: bacteriophage excisionase; YPO2087; phage(gi169257269)  4e-19  Click
4 complement(2366631..2366834)  hypothetical protein; YPO2087a  N/A  Click
5 complement(2366853..2367497)  PHAGE_Pseudo_F116: DNA adenine methyltransferase; YPO2088; phage(gi56692911)  4e-43  Click
6 2367596..2368024  PHAGE_Cronob_ENT47670: putative ninB protein; YPO2089; phage(gi431810524)  2e-46  Click
7 2368098..2368703  PHAGE_Salmon_ST160: NinG; YPO2090; phage(gi318065938)  4e-43  Click
8 2368704..2369093  PHAGE_Entero_2008: antitermination protein Q; YPO2091; phage(gi209427762)  2e-44  Click
9 2369097..2369315  hypothetical protein; YPO2092  N/A  Click
10 2369364..2369927  PHAGE_Salmon_SPN3UB: hypothetical protein; YPO2093; phage(gi423262398)  1e-29  Click
11 complement(2370012..2370194)  hypothetical protein; YPO2094  N/A  Click
12 2370351..2370560  hypothetical protein; YPO2095  N/A  Click
13 complement(2370557..2370832)  hypothetical protein; YPO2096  N/A  Click
14 2370955..2371275  PHAGE_Salmon_vB_SosS_Oslo: class II holin; YPO2097; phage(gi399528833)  6e-14  Click
15 2371306..2371818  PHAGE_Cronob_phiES15: putative endolysin; YPO2098; phage(gi401817587)  2e-51  Click
16 2371803..2372261  PHAGE_Entero_cdtI: lysin; YPO2099; phage(gi148609441)  2e-24  Click
17 2372723..2373520  PHAGE_Cronob_ENT47670: phage antirepressor protein; YPO2100; phage(gi431810509)  8e-50  Click
18 2373977..2374612  PHAGE_Pectob_ZF40: putative transposase; YPO2101; phage(gi422936679)  3e-87  Click
19 2374643..2375092  PHAGE_Salmon_vB_SosS_Oslo: hypothetical protein; YPO2102; phage(gi399528759)  4e-51  Click
20 2375728..2376936  PROPHAGE_Escher_CFT073: transposase; YPO2104; phage(gi26246249)  0.0  Click
21 2379304..2380416  PHAGE_Cronob_phiES15: hypothetical protein; YPO2108; phage(gi401817594)  3e-123  Click
22 2380538..2381311  PHAGE_Xantho_Xp15: putative phage structural protein; YPO2109; phage(gi66392059)  1e-19  Click
23 2381325..2382530  PHAGE_Acinet_Bphi_B1251: major capsid protein; YPO2110; phage(gi423262007)  1e-113  Click
24 2382530..2383060  PHAGE_Cronob_phiES15: hypothetical protein; YPO2111; phage(gi401817598)  3e-23  Click
25 2383057..2383311  PHAGE_Salmon_SSU5: hypothetical protein; YPO2112; phage(gi410491538)  8e-20  Click
26 2383313..2383663  PHAGE_Cronob_phiES15: putative structural protein 2; YPO2113; phage(gi401817599)  5e-33  Click
27 2383665..2384249  PHAGE_Shigel_EP23: putative tail protein; YPO2114; phage(gi371496282)  2e-27  Click
28 2384246..2384653  PHAGE_Cronob_phiES15: hypothetical protein; YPO2115; phage(gi401817601)  1e-16  Click
29 2384719..2385639  PHAGE_Cronob_phiES15: putative major tail protein; YPO2116; phage(gi401817602)  3e-75  Click
30 2385652..2385963  PHAGE_Cronob_phiES15: hypothetical protein; YPO2117; phage(gi401817603)  9e-32  Click
31 2386050..2386271  PHAGE_Cronob_phiES15: hypothetical protein; YPO2118; phage(gi401817604)  6e-14  Click
32 2386272..2389775  PHAGE_Entero_mEp213: tail length tape measure protein; YPO2119; phage(gi428782602)  5e-152  Click
33 2389778..2390119  PHAGE_Cronob_phiES15: putative minor tail protein; YPO2120; phage(gi401817607)  2e-31  Click
34 2390424..2390882  PROPHAGE_Salmon_Ty2: transposase; YPO2121; phage(gi29143766)  5e-84  Click
35 2391003..2391755  PHAGE_Entero_HK225: minor tail protein; YPO2122; phage(gi428782393)  3e-101  Click
36 2391758..2392468  PHAGE_Entero_HK140: minor tail protein K; YPO2123; phage(gi428781957)  8e-109  Click
37 2392729..2393361  hypothetical protein; YPO2124  N/A  Click
38 complement(2393440..2393979)  PHAGE_Escher_TL_2011b: hypothetical protein; YPO2125; phage(gi418487671)  3e-32  Click
39 2394149..2395243  PHAGE_Haemop_Aaphi23: putative antirepressor protein Ant; YPO2126; phage(gi31544021)  4e-37  Click
40 2395342..2395893  PHAGE_Cronob_phiES15: hypothetical protein; YPO2127; phage(gi401817606)  5e-08  Click
41 2395901..2396251  PHAGE_Entero_mEpX2: hypothetical protein; YPO2128; phage(gi428765632)  8e-14  Click
42 2396307..2396927  PHAGE_Entero_mEpX2: tail assembly protein; YPO2129; phage(gi428765633)  9e-66  Click
43 complement(2397102..2397413)  hypothetical protein; YPO2130  N/A  Click
44 2397499..2400702  PHAGE_Cronob_phiES15: putative host specificity protein; YPO2131; phage(gi401817611)  0.0  Click
45 2400702..2401700  PHAGE_Cronob_phiES15: hypothetical protein; YPO2132; phage(gi401817612)  7e-25  Click
46 2401717..2402634  PHAGE_Salmon_SSU5: putative phage tail fiber protein; YPO2133; phage(gi410491431)  2e-09  Click
47 2402645..2403064  PHAGE_Bacter_2: tail fiber; YPO2134; phage(gi212499733)  2e-10  Click
48 2403061..2403216  hypothetical protein; YPO2135  N/A  Click
49 complement(2403285..2404493)  PROPHAGE_Escher_CFT073: transposase; YPO2136; phage(gi26246249)  0.0  Click
50 complement(2404798..2405970)  hypothetical protein; YPO2137  N/A  Click
51 complement(2405974..2407173)  PHAGE_Africa_virus: NifS-like protein; YPO2138; phage(gi9628230)  4e-08  Click
Region 5, total : 14 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 4059509..4060114  PHAGE_Acinet_Ac42: hypothetical protein; YPO3638; phage(gi311992578)  7e-19  Click
2 complement(4060304..4061158)  putative glutathione S-transferase YghU; YPO3639  N/A  Click
3 4061409..4062755  hypothetical protein; YPO3640  N/A  Click
4 complement(4062862..4064037)  PHAGE_Clostr_phiCD38_2: tail tape measure; YPO3641; phage(gi333798123)  7e-05  Click
5 4064442..4064900  PHAGE_Hypert_2: IS element Dka2 orfA; YPO3642; phage(gi300116744)  4e-15  Click
6 complement(4065083..4065295)  PHAGE_Lactoc_bIL312: Csp; YPO3643; phage(gi13095918)  4e-17  Click
7 complement(4065555..4065767)  PHAGE_Lactoc_bIL312: Csp; YPO3644; phage(gi13095918)  3e-17  Click
8 complement(4065860..4066024)  hypothetical protein; YPO3645  N/A  Click
9 complement(4066300..4066767)  PHAGE_Escher_TL_2011b: putative outer membrane lipoprotein; YPO3646; phage(gi418487638)  2e-08  Click
10 4067228..4068055  hypothetical protein; YPO3647  N/A  Click
11 4068120..4069010  PHAGE_Synech_S_SM1: 6-phosphogluconate dehydrogenase; YPO3648; phage(gi326782617)  5e-11  Click
12 4069188..4069583  putative gamma carboxymuconolactone decarboxylase; YPO3649  N/A  Click
13 4069737..4071101  PHAGE_Burkho_phi1026b: gp59; YPO3650; phage(gi38707949)  1e-21  Click
14 4071191..4071853  PHAGE_Strept_phiC31: gp26; YPO3651; phage(gi40807292)  3e-05  Click