Definition Pseudomonas putida KT2440 chromosome, complete genome.
Accession NC_002947
Length 6,181,863
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 32 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1748226..1748663)  PHAGE_Pseudo_AF: putative tellurite resistance protein; PP_1548; phage(gi431810338)  3e-19  Click
2 complement(1749380..1750231)  PHAGE_Pseudo_phi297: putative phage repressor; PP_1549; phage(gi374531272)  2e-55  Click
3 1750320..1750496  PHAGE_Entero_mEp235: prophage antirepressor; PP_1550; phage(gi428781851)  1e-06  Click
4 1750638..1751492  PHAGE_Pseudo_PAJU2: putative replication protein O; PP_1551; phage(gi209552482)  3e-39  Click
5 1751590..1752294  PHAGE_Entero_mEpX1: putative replication protein DnaC; PP_1552; phage(gi428781919)  5e-34  Click
6 1752297..1752593  PHAGE_Entero_mEp235: hypothetical protein; PP_1553; phage(gi428781862)  2e-32  Click
7 1752590..1753012  PHAGE_Entero_P1: pmgM; PP_1554; phage(gi46401706)  3e-17  Click
8 1752879..1752890  attL    CGTCCAGCCAGC  N/A  Click
9 1753027..1754298  PHAGE_Salmon_SPN3UB: putative integrase; PP_1555; phage(gi423262417)  2e-15  Click
10 1754295..1754615  PHAGE_Pseudo_D3: Orf80; PP_1556; phage(gi9635668)  9e-05  Click
11 1754588..1754929  hypothetical protein; PP_1557  N/A  Click
12 1754940..1755281  PHAGE_Pseudo_PAJU2: putative antitermination protein Q; PP_1558; phage(gi209552491)  6e-12  Click
13 1755481..1755804  PHAGE_Pseudo_F10: Putative Holin; PP_1559; phage(gi148912825)  1e-29  Click
14 1755865..1756047  hypothetical protein; PP_1560  N/A  Click
15 1756038..1756406  PHAGE_Klebsi_phiKO2: Gp60; PP_1561; phage(gi46402146)  8e-23  Click
16 1756534..1756917  PHAGE_Entero_mEp235: terminase small subunit; PP_1562; phage(gi428781811)  7e-05  Click
17 1756941..1758626  PHAGE_Pseudo_D3: terminase; PP_1563; phage(gi9635588)  2e-151  Click
18 1758638..1758802  PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; PP_1564; phage(gi374531648)  9e-06  Click
19 1758834..1760129  PHAGE_Entero_mEp235: portal protein; PP_1565; phage(gi428781813)  6e-98  Click
20 1760126..1760827  PHAGE_Entero_phiP27: putative prohead protease; PP_1566; phage(gi18249903)  4e-38  Click
21 1760849..1762093  PHAGE_Xantho_CP1: putative head protein; PP_1567; phage(gi431811003)  3e-83  Click
22 1762135..1762359  hypothetical protein; PP_1568  N/A  Click
23 1762363..1762839  PHAGE_Entero_mEp235: head-tail connector II; PP_1569; phage(gi428781817)  7e-07  Click
24 1762839..1763180  PHAGE_Entero_mEp235: hypothetical protein; PP_1570; phage(gi428781819)  5e-20  Click
25 1763173..1763658  PHAGE_Entero_mEp235: hypothetical protein; PP_1571; phage(gi428781820)  1e-31  Click
26 1763655..1764023  PHAGE_Entero_mEp235: hypothetical protein; PP_1572; phage(gi428781821)  5e-33  Click
27 1764089..1764823  PHAGE_Pseudo_vB_PaeS_PMG1: putative major tail protein; PP_1573; phage(gi374531661)  2e-39  Click
28 1764832..1765302  PHAGE_Entero_mEp235: tail assembly chaperone; PP_1574; phage(gi428781823)  9e-41  Click
29 1765365..1765526  PHAGE_Entero_mEp235: hypothetical protein; PP_1575; phage(gi428781824)  2e-05  Click
30 1765588..1765911  PHAGE_Escher_vB_EcoP_G7C: putative membrane immunity protein; PP_1576; phage(gi345461858)  2e-09  Click
31 1765958..1768399  PHAGE_Pseudo_vB_PaeS_PMG1: tail tape measure protein; PP_1577; phage(gi374531664)  0.0  Click
32 1768396..1768875  PHAGE_Pseudo_D3: Orf22; PP_1578; phage(gi9635614)  1e-26  Click
33 1769249..1772248  PHAGE_Pseudo_vB_PaeS_PMG1: putative tail protein; PP_1579; phage(gi374531670)  1e-89  Click
34 1781069..1781080  attR    CGTCCAGCCAGC  N/A  Click
Region 2, total : 9 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2831042..2831053  attL    CCTGGTTTCAGC  N/A  Click
2 complement(2843633..2844637)  PHAGE_Bacill_1: Putative endonuclease; PP_2495; phage(gi155042966)  3e-50  Click
3 complement(2844717..2845745)  PHAGE_Mycoba_Pipefish: gp96; PP_2496; phage(gi109521936)  2e-14  Click
4 complement(2845783..2846112)  PHAGE_Edward_KF_1: hypothetical protein; PP_2497; phage(gi414090353)  2e-09  Click
5 2846317..2846562  hypothetical protein; PP_2498  N/A  Click
6 2846687..2846959  hypothetical protein; PP_2499  N/A  Click
7 2846947..2847240  hypothetical protein; PP_2500  N/A  Click
8 complement(2847234..2848643)  PHAGE_Pseudo_F116: integrase; PP_2501; phage(gi56692927)  1e-18  Click
9 complement(2849166..2850092)  PHAGE_Burkho_phi1026b: gp58; PP_2502; phage(gi38707948)  1e-08  Click
10 2850206..2850937  PHAGE_Tricho_2c: hypothetical protein TNAV2c_gp071; PP_2503; phage(gi116326757)  3e-11  Click
11 2858715..2858726  attR    CCTGGTTTCAGC  N/A  Click
Region 3, total : 41 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 3411566..3411577  attL    GATCTGCGGCTG  N/A  Click
2 3412988..3414613  PHAGE_Bacill_phBC6A51: Site-specific recombinase; PP_3026; phage(gi31415812)  7e-09  Click
3 complement(3414886..3415104)  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp43; PP_3027; phage(gi17313260)  5e-15  Click
4 complement(3415097..3415411)  hypothetical protein; PP_3028  N/A  Click
5 complement(3415408..3417237)  PHAGE_Rhodob_RcapNL: C-5 cytosine-specific DNA methylase; PP_3029; phage(gi461474996)  9e-94  Click
6 complement(3417234..3418037)  hypothetical protein; PP_3030  N/A  Click
7 complement(3418091..3418408)  PHAGE_Burkho_AH2: excisionase; PP_3031; phage(gi399529070)  1e-06  Click
8 complement(3418567..3418857)  DNA-binding protein Roi-related protein; PP_3032  N/A  Click
9 complement(3419450..3420181)  PHAGE_Salmon_vB_SemP_Emek: C2 protein; PP_3033; phage(gi399498836)  9e-31  Click
10 3420260..3420523  PHAGE_Stx2_c_I: Cro protein; PP_3034; phage(gi20065917)  3e-07  Click
11 complement(3420434..3420607)  hypothetical protein; PP_3035  N/A  Click
12 3420970..3421149  hypothetical protein; PP_3036  N/A  Click
13 3421632..3421850  PHAGE_Mannhe_phiMHaA1: hypothetical protein MhaA1p11; PP_3037; phage(gi109289947)  4e-08  Click
14 3421840..3424050  PHAGE_Staphy_2638A: ORF003; PP_3038; phage(gi66395453)  3e-57  Click
15 3424047..3424409  hypothetical protein; PP_3039  N/A  Click
16 3424921..3425268  pyocin R2_PP, holin; PP_3040  N/A  Click
17 3425433..3426044  hypothetical protein; PP_3041  N/A  Click
18 3426049..3428085  PHAGE_Synech_S_CBS1: large terminase subunit; PP_3042; phage(gi356870795)  4e-115  Click
19 3428087..3428293  hypothetical protein; PP_3043  N/A  Click
20 3428290..3429783  PHAGE_Vibrio_vB_VpaM_MAR: portal protein; PP_3044; phage(gi428782728)  2e-90  Click
21 3429780..3430943  PHAGE_Entero_mEp213: head maturation protease; PP_3045; phage(gi428782594)  1e-38  Click
22 3430946..3431293  hypothetical protein; PP_3046  N/A  Click
23 3431355..3432350  PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; PP_3047; phage(gi428782731)  2e-34  Click
24 3432347..3432667  hypothetical protein; PP_3048  N/A  Click
25 3432664..3433326  PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; PP_3049; phage(gi428782733)  2e-13  Click
26 3433319..3433849  hypothetical protein; PP_3050  N/A  Click
27 3433846..3434448  PHAGE_Burkho_phi52237: phage baseplate assembly protein; PP_3051; phage(gi72537705)  3e-18  Click
28 3434491..3434760  hypothetical protein; PP_3052  N/A  Click
29 3434763..3435089  PHAGE_Vibrio_vB_VpaM_MAR: baseplate assembly protein; PP_3053; phage(gi428782737)  7e-22  Click
30 3435086..3436066  PHAGE_Salmon_RE_2010: baseplate assembly protein J; PP_3054; phage(gi418489711)  1e-53  Click
31 3436063..3436875  PHAGE_Vibrio_vB_VpaM_MAR: tail protein; PP_3055; phage(gi428782739)  2e-22  Click
32 3436872..3437750  PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; PP_3056; phage(gi428782740)  3e-20  Click
33 3437757..3438497  hypothetical protein; PP_3057  N/A  Click
34 3438520..3438981  PHAGE_Ralsto_phiRSA1: tail fiber assembly-like protein; PP_3058; phage(gi145708099)  4e-23  Click
35 3439076..3440242  PHAGE_Vibrio_vB_VpaM_MAR: tail sheath protein; PP_3059; phage(gi428782746)  4e-85  Click
36 3440255..3440764  PHAGE_Vibrio_vB_VpaM_MAR: tail tube protein; PP_3060; phage(gi428782747)  8e-36  Click
37 3440810..3441106  hypothetical protein; PP_3061  N/A  Click
38 3441239..3444508  PHAGE_Vibrio_VP882: phage-related tail protein; PP_3062; phage(gi126010872)  7e-33  Click
39 3444518..3445363  PHAGE_Vibrio_vB_VpaM_MAR: putative tail protein; PP_3063; phage(gi428782751)  3e-19  Click
40 3445338..3445544  PHAGE_Burkho_phiE202: gp46, phage Tail Protein X; PP_3064; phage(gi134288782)  1e-06  Click
41 3445604..3446647  PHAGE_Vibrio_vB_VpaM_MAR: putative tail protein; PP_3065; phage(gi428782753)  2e-49  Click
42 3446684..3447235  PHAGE_Salmon_PVP_SE1: lysozyme; PP_3066; phage(gi363539668)  1e-46  Click
43 3447568..3447579  attR    GATCTGCGGCTG  N/A  Click
Region 4, total : 47 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 4375283..4375294  attL    GCCCTGCACCAC  N/A  Click
2 complement(4378171..4378710)  PHAGE_Pseudo_vB_PaeS_PMG1: lysozyme; PP_3854; phage(gi374531676)  6e-46  Click
3 complement(4379112..4379336)  hypothetical protein; PP_3855  N/A  Click
4 complement(4379759..4380523)  hypothetical protein; PP_3856  N/A  Click
5 complement(4380535..4382787)  PHAGE_Vibrio_VvAW1: hypothetical protein; PP_3857; phage(gi460042928)  1e-16  Click
6 complement(4383049..4383852)  PHAGE_Bacill_SPO1: gp1.4; PP_3858; phage(gi209972876)  9e-06  Click
7 complement(4383855..4384499)  PHAGE_Entero_SfV: tail protein; PP_3859; phage(gi19548988)  3e-16  Click
8 complement(4384490..4385533)  PHAGE_Entero_SfV: tail protein; PP_3860; phage(gi19549009)  1e-45  Click
9 complement(4385523..4385909)  PHAGE_Entero_SfV: tail protein; PP_3861; phage(gi19549008)  3e-22  Click
10 complement(4385906..4386406)  PHAGE_Entero_SfV: tail protein; PP_3862; phage(gi19549007)  1e-22  Click
11 complement(4386415..4387524)  PHAGE_Entero_SfV: tail protein; PP_3863; phage(gi19549006)  5e-73  Click
12 complement(4387528..4388790)  PHAGE_Entero_SfV: tail/DNA circulation protein; PP_3864; phage(gi19549005)  4e-37  Click
13 complement(4388783..4390738)  PHAGE_Entero_SfV: tail protein; PP_3865; phage(gi19549004)  7e-54  Click
14 complement(4390868..4391191)  PHAGE_Entero_SfV: hypothetical protein SfVp13; PP_3866; phage(gi19549003)  3e-15  Click
15 complement(4391161..4391514)  PHAGE_Entero_SfV: hypothetical protein SfVp12; PP_3867; phage(gi19549002)  3e-18  Click
16 complement(4391591..4393012)  PHAGE_Bordet_1: reverse transcriptase; PP_3868; phage(gi41179367)  2e-12  Click
17 complement(4393482..4394969)  PHAGE_Entero_SfV: tail sheath protein; PP_3869; phage(gi19549001)  4e-138  Click
18 complement(4394969..4395172)  PHAGE_Entero_SfV: hypothetical protein SfVp10; PP_3870; phage(gi19549000)  3e-07  Click
19 complement(4395178..4395645)  PHAGE_Entero_SfV: hypothetical protein SfVp09; PP_3871; phage(gi19548999)  2e-19  Click
20 4395671..4395790  hypothetical protein; PP_3872  N/A  Click
21 complement(4395801..4396316)  PHAGE_Entero_SfV: hypothetical protein SfVp08; PP_3873; phage(gi19548998)  3e-08  Click
22 complement(4396309..4396683)  PHAGE_Entero_SfV: hypothetical protein SfVp07; PP_3874; phage(gi19548997)  1e-11  Click
23 complement(4396686..4397237)  PHAGE_Burkho_phiE125: hypothetical protein phiE125p08; PP_3875; phage(gi17975169)  3e-33  Click
24 complement(4397240..4397566)  hypothetical protein; PP_3876  N/A  Click
25 complement(4397541..4399013)  PHAGE_Burkho_phiE125: putative major capsid protein; PP_3877; phage(gi17975167)  7e-154  Click
26 complement(4398916..4399887)  PHAGE_Burkho_phiE125: putative capsid assembly protein/protease; PP_3878; phage(gi17975166)  3e-88  Click
27 complement(4399884..4401155)  PHAGE_Burkho_2: gp4, phage portal protein, HK97 family; PP_3879; phage(gi134288632)  5e-153  Click
28 complement(4401158..4401346)  PHAGE_Burkho_phiE125: hypothetical protein phiE125p03; PP_3880; phage(gi17975164)  1e-11  Click
29 complement(4401343..4403151)  PHAGE_Tetras_SI1: terminase; PP_3881; phage(gi472342258)  5e-105  Click
30 complement(4403111..4403578)  PHAGE_Entero_mEp235: terminase small subunit; PP_3882; phage(gi428781811)  7e-31  Click
31 complement(4403714..4404034)  PHAGE_Pseudo_PAJU2: putative endonuclease; PP_3883; phage(gi209552497)  1e-28  Click
32 complement(4404038..4404361)  PHAGE_Entero_SfV: holin; PP_3884; phage(gi19549036)  3e-10  Click
33 complement(4404792..4404899)  hypothetical protein; PP_3885  N/A  Click
34 complement(4405298..4405558)  hypothetical protein; PP_3886  N/A  Click
35 complement(4405542..4406213)  PHAGE_Pseudo_phi297: hypothetical protein; PP_3887; phage(gi374531281)  1e-38  Click
36 complement(4406226..4406546)  hypothetical protein; PP_3888  N/A  Click
37 4406454..4406465  attR    GCCCTGCACCAC  N/A  Click
38 complement(4406543..4407841)  PROPHAGE_Escher_MG1655: CP4-57 prophage; integrase; PP_3889; phage(gi16130540)  1e-15  Click
39 complement(4407838..4408281)  PHAGE_Psychr_pOW20_A: hypothetical protein; PP_3890; phage(gi472339811)  2e-15  Click
40 complement(4408430..4408726)  PHAGE_Salmon_SPN9CC: hypothetical protein; PP_3891; phage(gi389060524)  1e-32  Click
41 complement(4408708..4408914)  hypothetical protein; PP_3892  N/A  Click
42 complement(4408914..4410311)  PHAGE_Pseudo_F10: Putative DnaB-like replicative helicase; PP_3893; phage(gi148912819)  1e-90  Click
43 complement(4410308..4411138)  PHAGE_Pseudo_PAJU2: putative replication protein O; PP_3894; phage(gi209552482)  2e-32  Click
44 complement(4411463..4411675)  PHAGE_Pseudo_vB_PaeS_PMG1: Cro repressor protein; PP_3895; phage(gi374531716)  4e-27  Click
45 4411763..4412410  PHAGE_Pseudo_vB_PaeS_PMG1: cI repressor protein; PP_3896; phage(gi374531715)  2e-28  Click
46 4412468..4412881  hypothetical protein; PP_3897  N/A  Click
47 4412925..4413161  hypothetical protein; PP_3898  N/A  Click
48 complement(4415057..4415389)  PHAGE_Entero_mEp234: HicB protein; PP_3899; phage(gi428782291)  2e-25  Click
49 complement(4415398..4415646)  PHAGE_Entero_mEp234: HicA protein; PP_3900; phage(gi428782292)  3e-08  Click