Definition | Pseudomonas putida KT2440 chromosome, complete genome. |
---|---|
Accession | NC_002947 |
Length | 6,181,863 |
Legend
Hits against Virus and prophage DB | |
Hits against Bacterial DB or GenBank file |
Region 1, total : 32 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | complement(1748226..1748663) | PHAGE_Pseudo_AF: putative tellurite resistance protein; PP_1548; phage(gi431810338) | 3e-19 | Click |
2 | complement(1749380..1750231) | PHAGE_Pseudo_phi297: putative phage repressor; PP_1549; phage(gi374531272) | 2e-55 | Click |
3 | 1750320..1750496 | PHAGE_Entero_mEp235: prophage antirepressor; PP_1550; phage(gi428781851) | 1e-06 | Click |
4 | 1750638..1751492 | PHAGE_Pseudo_PAJU2: putative replication protein O; PP_1551; phage(gi209552482) | 3e-39 | Click |
5 | 1751590..1752294 | PHAGE_Entero_mEpX1: putative replication protein DnaC; PP_1552; phage(gi428781919) | 5e-34 | Click |
6 | 1752297..1752593 | PHAGE_Entero_mEp235: hypothetical protein; PP_1553; phage(gi428781862) | 2e-32 | Click |
7 | 1752590..1753012 | PHAGE_Entero_P1: pmgM; PP_1554; phage(gi46401706) | 3e-17 | Click |
8 | 1752879..1752890 | attL CGTCCAGCCAGC | N/A | Click |
9 | 1753027..1754298 | PHAGE_Salmon_SPN3UB: putative integrase; PP_1555; phage(gi423262417) | 2e-15 | Click |
10 | 1754295..1754615 | PHAGE_Pseudo_D3: Orf80; PP_1556; phage(gi9635668) | 9e-05 | Click |
11 | 1754588..1754929 | hypothetical protein; PP_1557 | N/A | Click |
12 | 1754940..1755281 | PHAGE_Pseudo_PAJU2: putative antitermination protein Q; PP_1558; phage(gi209552491) | 6e-12 | Click |
13 | 1755481..1755804 | PHAGE_Pseudo_F10: Putative Holin; PP_1559; phage(gi148912825) | 1e-29 | Click |
14 | 1755865..1756047 | hypothetical protein; PP_1560 | N/A | Click |
15 | 1756038..1756406 | PHAGE_Klebsi_phiKO2: Gp60; PP_1561; phage(gi46402146) | 8e-23 | Click |
16 | 1756534..1756917 | PHAGE_Entero_mEp235: terminase small subunit; PP_1562; phage(gi428781811) | 7e-05 | Click |
17 | 1756941..1758626 | PHAGE_Pseudo_D3: terminase; PP_1563; phage(gi9635588) | 2e-151 | Click |
18 | 1758638..1758802 | PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; PP_1564; phage(gi374531648) | 9e-06 | Click |
19 | 1758834..1760129 | PHAGE_Entero_mEp235: portal protein; PP_1565; phage(gi428781813) | 6e-98 | Click |
20 | 1760126..1760827 | PHAGE_Entero_phiP27: putative prohead protease; PP_1566; phage(gi18249903) | 4e-38 | Click |
21 | 1760849..1762093 | PHAGE_Xantho_CP1: putative head protein; PP_1567; phage(gi431811003) | 3e-83 | Click |
22 | 1762135..1762359 | hypothetical protein; PP_1568 | N/A | Click |
23 | 1762363..1762839 | PHAGE_Entero_mEp235: head-tail connector II; PP_1569; phage(gi428781817) | 7e-07 | Click |
24 | 1762839..1763180 | PHAGE_Entero_mEp235: hypothetical protein; PP_1570; phage(gi428781819) | 5e-20 | Click |
25 | 1763173..1763658 | PHAGE_Entero_mEp235: hypothetical protein; PP_1571; phage(gi428781820) | 1e-31 | Click |
26 | 1763655..1764023 | PHAGE_Entero_mEp235: hypothetical protein; PP_1572; phage(gi428781821) | 5e-33 | Click |
27 | 1764089..1764823 | PHAGE_Pseudo_vB_PaeS_PMG1: putative major tail protein; PP_1573; phage(gi374531661) | 2e-39 | Click |
28 | 1764832..1765302 | PHAGE_Entero_mEp235: tail assembly chaperone; PP_1574; phage(gi428781823) | 9e-41 | Click |
29 | 1765365..1765526 | PHAGE_Entero_mEp235: hypothetical protein; PP_1575; phage(gi428781824) | 2e-05 | Click |
30 | 1765588..1765911 | PHAGE_Escher_vB_EcoP_G7C: putative membrane immunity protein; PP_1576; phage(gi345461858) | 2e-09 | Click |
31 | 1765958..1768399 | PHAGE_Pseudo_vB_PaeS_PMG1: tail tape measure protein; PP_1577; phage(gi374531664) | 0.0 | Click |
32 | 1768396..1768875 | PHAGE_Pseudo_D3: Orf22; PP_1578; phage(gi9635614) | 1e-26 | Click |
33 | 1769249..1772248 | PHAGE_Pseudo_vB_PaeS_PMG1: putative tail protein; PP_1579; phage(gi374531670) | 1e-89 | Click |
34 | 1781069..1781080 | attR CGTCCAGCCAGC | N/A | Click |
Region 2, total : 9 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 2831042..2831053 | attL CCTGGTTTCAGC | N/A | Click |
2 | complement(2843633..2844637) | PHAGE_Bacill_1: Putative endonuclease; PP_2495; phage(gi155042966) | 3e-50 | Click |
3 | complement(2844717..2845745) | PHAGE_Mycoba_Pipefish: gp96; PP_2496; phage(gi109521936) | 2e-14 | Click |
4 | complement(2845783..2846112) | PHAGE_Edward_KF_1: hypothetical protein; PP_2497; phage(gi414090353) | 2e-09 | Click |
5 | 2846317..2846562 | hypothetical protein; PP_2498 | N/A | Click |
6 | 2846687..2846959 | hypothetical protein; PP_2499 | N/A | Click |
7 | 2846947..2847240 | hypothetical protein; PP_2500 | N/A | Click |
8 | complement(2847234..2848643) | PHAGE_Pseudo_F116: integrase; PP_2501; phage(gi56692927) | 1e-18 | Click |
9 | complement(2849166..2850092) | PHAGE_Burkho_phi1026b: gp58; PP_2502; phage(gi38707948) | 1e-08 | Click |
10 | 2850206..2850937 | PHAGE_Tricho_2c: hypothetical protein TNAV2c_gp071; PP_2503; phage(gi116326757) | 3e-11 | Click |
11 | 2858715..2858726 | attR CCTGGTTTCAGC | N/A | Click |
Region 3, total : 41 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 3411566..3411577 | attL GATCTGCGGCTG | N/A | Click |
2 | 3412988..3414613 | PHAGE_Bacill_phBC6A51: Site-specific recombinase; PP_3026; phage(gi31415812) | 7e-09 | Click |
3 | complement(3414886..3415104) | PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp43; PP_3027; phage(gi17313260) | 5e-15 | Click |
4 | complement(3415097..3415411) | hypothetical protein; PP_3028 | N/A | Click |
5 | complement(3415408..3417237) | PHAGE_Rhodob_RcapNL: C-5 cytosine-specific DNA methylase; PP_3029; phage(gi461474996) | 9e-94 | Click |
6 | complement(3417234..3418037) | hypothetical protein; PP_3030 | N/A | Click |
7 | complement(3418091..3418408) | PHAGE_Burkho_AH2: excisionase; PP_3031; phage(gi399529070) | 1e-06 | Click |
8 | complement(3418567..3418857) | DNA-binding protein Roi-related protein; PP_3032 | N/A | Click |
9 | complement(3419450..3420181) | PHAGE_Salmon_vB_SemP_Emek: C2 protein; PP_3033; phage(gi399498836) | 9e-31 | Click |
10 | 3420260..3420523 | PHAGE_Stx2_c_I: Cro protein; PP_3034; phage(gi20065917) | 3e-07 | Click |
11 | complement(3420434..3420607) | hypothetical protein; PP_3035 | N/A | Click |
12 | 3420970..3421149 | hypothetical protein; PP_3036 | N/A | Click |
13 | 3421632..3421850 | PHAGE_Mannhe_phiMHaA1: hypothetical protein MhaA1p11; PP_3037; phage(gi109289947) | 4e-08 | Click |
14 | 3421840..3424050 | PHAGE_Staphy_2638A: ORF003; PP_3038; phage(gi66395453) | 3e-57 | Click |
15 | 3424047..3424409 | hypothetical protein; PP_3039 | N/A | Click |
16 | 3424921..3425268 | pyocin R2_PP, holin; PP_3040 | N/A | Click |
17 | 3425433..3426044 | hypothetical protein; PP_3041 | N/A | Click |
18 | 3426049..3428085 | PHAGE_Synech_S_CBS1: large terminase subunit; PP_3042; phage(gi356870795) | 4e-115 | Click |
19 | 3428087..3428293 | hypothetical protein; PP_3043 | N/A | Click |
20 | 3428290..3429783 | PHAGE_Vibrio_vB_VpaM_MAR: portal protein; PP_3044; phage(gi428782728) | 2e-90 | Click |
21 | 3429780..3430943 | PHAGE_Entero_mEp213: head maturation protease; PP_3045; phage(gi428782594) | 1e-38 | Click |
22 | 3430946..3431293 | hypothetical protein; PP_3046 | N/A | Click |
23 | 3431355..3432350 | PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; PP_3047; phage(gi428782731) | 2e-34 | Click |
24 | 3432347..3432667 | hypothetical protein; PP_3048 | N/A | Click |
25 | 3432664..3433326 | PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; PP_3049; phage(gi428782733) | 2e-13 | Click |
26 | 3433319..3433849 | hypothetical protein; PP_3050 | N/A | Click |
27 | 3433846..3434448 | PHAGE_Burkho_phi52237: phage baseplate assembly protein; PP_3051; phage(gi72537705) | 3e-18 | Click |
28 | 3434491..3434760 | hypothetical protein; PP_3052 | N/A | Click |
29 | 3434763..3435089 | PHAGE_Vibrio_vB_VpaM_MAR: baseplate assembly protein; PP_3053; phage(gi428782737) | 7e-22 | Click |
30 | 3435086..3436066 | PHAGE_Salmon_RE_2010: baseplate assembly protein J; PP_3054; phage(gi418489711) | 1e-53 | Click |
31 | 3436063..3436875 | PHAGE_Vibrio_vB_VpaM_MAR: tail protein; PP_3055; phage(gi428782739) | 2e-22 | Click |
32 | 3436872..3437750 | PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; PP_3056; phage(gi428782740) | 3e-20 | Click |
33 | 3437757..3438497 | hypothetical protein; PP_3057 | N/A | Click |
34 | 3438520..3438981 | PHAGE_Ralsto_phiRSA1: tail fiber assembly-like protein; PP_3058; phage(gi145708099) | 4e-23 | Click |
35 | 3439076..3440242 | PHAGE_Vibrio_vB_VpaM_MAR: tail sheath protein; PP_3059; phage(gi428782746) | 4e-85 | Click |
36 | 3440255..3440764 | PHAGE_Vibrio_vB_VpaM_MAR: tail tube protein; PP_3060; phage(gi428782747) | 8e-36 | Click |
37 | 3440810..3441106 | hypothetical protein; PP_3061 | N/A | Click |
38 | 3441239..3444508 | PHAGE_Vibrio_VP882: phage-related tail protein; PP_3062; phage(gi126010872) | 7e-33 | Click |
39 | 3444518..3445363 | PHAGE_Vibrio_vB_VpaM_MAR: putative tail protein; PP_3063; phage(gi428782751) | 3e-19 | Click |
40 | 3445338..3445544 | PHAGE_Burkho_phiE202: gp46, phage Tail Protein X; PP_3064; phage(gi134288782) | 1e-06 | Click |
41 | 3445604..3446647 | PHAGE_Vibrio_vB_VpaM_MAR: putative tail protein; PP_3065; phage(gi428782753) | 2e-49 | Click |
42 | 3446684..3447235 | PHAGE_Salmon_PVP_SE1: lysozyme; PP_3066; phage(gi363539668) | 1e-46 | Click |
43 | 3447568..3447579 | attR GATCTGCGGCTG | N/A | Click |
Region 4, total : 47 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 4375283..4375294 | attL GCCCTGCACCAC | N/A | Click |
2 | complement(4378171..4378710) | PHAGE_Pseudo_vB_PaeS_PMG1: lysozyme; PP_3854; phage(gi374531676) | 6e-46 | Click |
3 | complement(4379112..4379336) | hypothetical protein; PP_3855 | N/A | Click |
4 | complement(4379759..4380523) | hypothetical protein; PP_3856 | N/A | Click |
5 | complement(4380535..4382787) | PHAGE_Vibrio_VvAW1: hypothetical protein; PP_3857; phage(gi460042928) | 1e-16 | Click |
6 | complement(4383049..4383852) | PHAGE_Bacill_SPO1: gp1.4; PP_3858; phage(gi209972876) | 9e-06 | Click |
7 | complement(4383855..4384499) | PHAGE_Entero_SfV: tail protein; PP_3859; phage(gi19548988) | 3e-16 | Click |
8 | complement(4384490..4385533) | PHAGE_Entero_SfV: tail protein; PP_3860; phage(gi19549009) | 1e-45 | Click |
9 | complement(4385523..4385909) | PHAGE_Entero_SfV: tail protein; PP_3861; phage(gi19549008) | 3e-22 | Click |
10 | complement(4385906..4386406) | PHAGE_Entero_SfV: tail protein; PP_3862; phage(gi19549007) | 1e-22 | Click |
11 | complement(4386415..4387524) | PHAGE_Entero_SfV: tail protein; PP_3863; phage(gi19549006) | 5e-73 | Click |
12 | complement(4387528..4388790) | PHAGE_Entero_SfV: tail/DNA circulation protein; PP_3864; phage(gi19549005) | 4e-37 | Click |
13 | complement(4388783..4390738) | PHAGE_Entero_SfV: tail protein; PP_3865; phage(gi19549004) | 7e-54 | Click |
14 | complement(4390868..4391191) | PHAGE_Entero_SfV: hypothetical protein SfVp13; PP_3866; phage(gi19549003) | 3e-15 | Click |
15 | complement(4391161..4391514) | PHAGE_Entero_SfV: hypothetical protein SfVp12; PP_3867; phage(gi19549002) | 3e-18 | Click |
16 | complement(4391591..4393012) | PHAGE_Bordet_1: reverse transcriptase; PP_3868; phage(gi41179367) | 2e-12 | Click |
17 | complement(4393482..4394969) | PHAGE_Entero_SfV: tail sheath protein; PP_3869; phage(gi19549001) | 4e-138 | Click |
18 | complement(4394969..4395172) | PHAGE_Entero_SfV: hypothetical protein SfVp10; PP_3870; phage(gi19549000) | 3e-07 | Click |
19 | complement(4395178..4395645) | PHAGE_Entero_SfV: hypothetical protein SfVp09; PP_3871; phage(gi19548999) | 2e-19 | Click |
20 | 4395671..4395790 | hypothetical protein; PP_3872 | N/A | Click |
21 | complement(4395801..4396316) | PHAGE_Entero_SfV: hypothetical protein SfVp08; PP_3873; phage(gi19548998) | 3e-08 | Click |
22 | complement(4396309..4396683) | PHAGE_Entero_SfV: hypothetical protein SfVp07; PP_3874; phage(gi19548997) | 1e-11 | Click |
23 | complement(4396686..4397237) | PHAGE_Burkho_phiE125: hypothetical protein phiE125p08; PP_3875; phage(gi17975169) | 3e-33 | Click |
24 | complement(4397240..4397566) | hypothetical protein; PP_3876 | N/A | Click |
25 | complement(4397541..4399013) | PHAGE_Burkho_phiE125: putative major capsid protein; PP_3877; phage(gi17975167) | 7e-154 | Click |
26 | complement(4398916..4399887) | PHAGE_Burkho_phiE125: putative capsid assembly protein/protease; PP_3878; phage(gi17975166) | 3e-88 | Click |
27 | complement(4399884..4401155) | PHAGE_Burkho_2: gp4, phage portal protein, HK97 family; PP_3879; phage(gi134288632) | 5e-153 | Click |
28 | complement(4401158..4401346) | PHAGE_Burkho_phiE125: hypothetical protein phiE125p03; PP_3880; phage(gi17975164) | 1e-11 | Click |
29 | complement(4401343..4403151) | PHAGE_Tetras_SI1: terminase; PP_3881; phage(gi472342258) | 5e-105 | Click |
30 | complement(4403111..4403578) | PHAGE_Entero_mEp235: terminase small subunit; PP_3882; phage(gi428781811) | 7e-31 | Click |
31 | complement(4403714..4404034) | PHAGE_Pseudo_PAJU2: putative endonuclease; PP_3883; phage(gi209552497) | 1e-28 | Click |
32 | complement(4404038..4404361) | PHAGE_Entero_SfV: holin; PP_3884; phage(gi19549036) | 3e-10 | Click |
33 | complement(4404792..4404899) | hypothetical protein; PP_3885 | N/A | Click |
34 | complement(4405298..4405558) | hypothetical protein; PP_3886 | N/A | Click |
35 | complement(4405542..4406213) | PHAGE_Pseudo_phi297: hypothetical protein; PP_3887; phage(gi374531281) | 1e-38 | Click |
36 | complement(4406226..4406546) | hypothetical protein; PP_3888 | N/A | Click |
37 | 4406454..4406465 | attR GCCCTGCACCAC | N/A | Click |
38 | complement(4406543..4407841) | PROPHAGE_Escher_MG1655: CP4-57 prophage; integrase; PP_3889; phage(gi16130540) | 1e-15 | Click |
39 | complement(4407838..4408281) | PHAGE_Psychr_pOW20_A: hypothetical protein; PP_3890; phage(gi472339811) | 2e-15 | Click |
40 | complement(4408430..4408726) | PHAGE_Salmon_SPN9CC: hypothetical protein; PP_3891; phage(gi389060524) | 1e-32 | Click |
41 | complement(4408708..4408914) | hypothetical protein; PP_3892 | N/A | Click |
42 | complement(4408914..4410311) | PHAGE_Pseudo_F10: Putative DnaB-like replicative helicase; PP_3893; phage(gi148912819) | 1e-90 | Click |
43 | complement(4410308..4411138) | PHAGE_Pseudo_PAJU2: putative replication protein O; PP_3894; phage(gi209552482) | 2e-32 | Click |
44 | complement(4411463..4411675) | PHAGE_Pseudo_vB_PaeS_PMG1: Cro repressor protein; PP_3895; phage(gi374531716) | 4e-27 | Click |
45 | 4411763..4412410 | PHAGE_Pseudo_vB_PaeS_PMG1: cI repressor protein; PP_3896; phage(gi374531715) | 2e-28 | Click |
46 | 4412468..4412881 | hypothetical protein; PP_3897 | N/A | Click |
47 | 4412925..4413161 | hypothetical protein; PP_3898 | N/A | Click |
48 | complement(4415057..4415389) | PHAGE_Entero_mEp234: HicB protein; PP_3899; phage(gi428782291) | 2e-25 | Click |
49 | complement(4415398..4415646) | PHAGE_Entero_mEp234: HicA protein; PP_3900; phage(gi428782292) | 3e-08 | Click |