| Definition | Bordetella pertussis Tohama I, complete genome. |
|---|---|
| Accession | NC_002929 |
| Length | 4,086,189 |
Legend
| Hits against Virus and prophage DB | |
| Hits against Bacterial DB or GenBank file |
Region 1, total : 10 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 37926..40064 | PHAGE_Bovine_5: large tegument protein; BP0034; phage(gi296316024) | 7e-05 | Click |
| 2 | 40061..40600 | PHAGE_Rachip_MNPV: hypothetical protein; BP0035; phage(gi23577910) | 7e-05 | Click |
| 3 | 40604..41332 | acyltransferase; BP0036 | N/A | Click |
| 4 | 41319..42212 | hypothetical protein; BP0037 | N/A | Click |
| 5 | 42283..42678 | lactoylglutathione lyase; BP0038 | N/A | Click |
| 6 | 42688..43218 | PHAGE_Synech_S_SSM7: RIIA-RIIB membrane-associated protein; BP0039; phage(gi326783953) | 1e-12 | Click |
| 7 | 43664..44614 | PHAGE_Spirop_3x: hypothetical protein SkV1VCR23x_ORF3; BP0041; phage(gi160688404) | 8e-09 | Click |
| 8 | 45201..45749 | hypothetical protein; BP0043 | N/A | Click |
| 9 | complement(45721..45957) | PHAGE_Pseudo_F10: Conserved hypothetical protein; putative transcriptional regulator, LuxR family; BP0044; phage(gi148912803) | 2e-06 | Click |
| 10 | 46085..46978 | PHAGE_Lactob_KC5a: putative minor tail protein; BP0045; phage(gi90592623) | 7e-05 | Click |
Region 2, total : 27 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 494583..494599 | attL CGCACGTGCACGGCCAC | N/A | Click |
| 2 | 494857..494870 | attL GCGCATCGCGCCCG | N/A | Click |
| 3 | complement(509219..510169) | PHAGE_Spirop_3x: hypothetical protein SkV1VCR23x_ORF3; BP0496; phage(gi160688404) | 2e-09 | Click |
| 4 | 510627..511550 | PHAGE_Burkho_phi1026b: gp58; BP0498; phage(gi38707948) | 1e-12 | Click |
| 5 | complement(511559..511957) | hypothetical protein; BP0499 | N/A | Click |
| 6 | 512199..514169 | PHAGE_Salmon_SSU5: putative phage tail fiber protein; BP0500; phage(gi410491431) | 3e-06 | Click |
| 7 | complement(514195..515472) | PHAGE_Ectoca_1: EsV-1-186; BP0501; phage(gi13242656) | 1e-05 | Click |
| 8 | 515656..516645 | PHAGE_Mannhe_phiMHaA1: integrase; BP0502; phage(gi109289985) | 4e-49 | Click |
| 9 | complement(516642..516842) | hypothetical protein; BP0503 | N/A | Click |
| 10 | complement(516843..516962) | hypothetical protein; BP0504 | N/A | Click |
| 11 | complement(516955..517296) | PHAGE_Burkho_BcepC6B: hypothetical protein BcepC6B_gp26; BP0505; phage(gi48697216) | 2e-09 | Click |
| 12 | complement(517307..518494) | PHAGE_Acinet_Ac42: hypothetical protein; BP0506; phage(gi311992508) | 4e-08 | Click |
| 13 | complement(518528..519055) | hypothetical protein; BP0507 | N/A | Click |
| 14 | complement(519113..519760) | PHAGE_Aeromo_vB_AsaM_56: putative exonuclease; BP0508; phage(gi422937501) | 1e-20 | Click |
| 15 | complement(519757..520743) | PHAGE_Aeromo_vB_AsaM_56: putative RecT recombination protein; BP0509; phage(gi422937502) | 3e-69 | Click |
| 16 | complement(520747..520929) | phage-related putative membrane protein; BP0510 | N/A | Click |
| 17 | complement(520926..521303) | hypothetical protein; BP0511 | N/A | Click |
| 18 | complement(521537..522004) | PHAGE_Burkho_Bcep176: gp36; BP0513; phage(gi77864661) | 6e-48 | Click |
| 19 | complement(522040..522990) | PHAGE_Spirop_3x: hypothetical protein SkV1VCR23x_ORF3; BP0514; phage(gi160688404) | 8e-10 | Click |
| 20 | complement(523089..523331) | hypothetical protein; BP0515 | N/A | Click |
| 21 | complement(523498..524139) | hypothetical protein; BP0516 | N/A | Click |
| 22 | complement(524150..525100) | PHAGE_Spirop_3x: hypothetical protein SkV1VCR23x_ORF3; BP0517; phage(gi160688404) | 8e-10 | Click |
| 23 | complement(525210..525605) | hypothetical protein; BP0518 | N/A | Click |
| 24 | 525775..526476 | glutathione S-transferase; BP0519 | N/A | Click |
| 25 | 526740..527600 | PHAGE_Cronob_vB_CsaM_GAP32: hypothetical protein; BP0520; phage(gi414086941) | 5e-68 | Click |
| 26 | complement(527675..528010) | hypothetical protein; BP0521 | N/A | Click |
| 27 | complement(528151..529296) | putative metal-activated pyridoxal enzyme; BP0522 | N/A | Click |
| 28 | complement(529324..529983) | haloacid dehalogenase; BP0523 | N/A | Click |
| 29 | 530732..530745 | attR GCGCATCGCGCCCG | N/A | Click |
| 30 | 530988..531194 | putative integrase (remnant); BP0525 | N/A | Click |
| 31 | 531881..531897 | attR CGCACGTGCACGGCCAC | N/A | Click |
Region 3, total : 25 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 3573119..3573790 | PHAGE_Pseudo_F116: hypothetical protein F116p67; BP3352; phage(gi56692976) | 4e-35 | Click |
| 2 | 3574119..3574340 | phage-like hypothetical protein; BP3353 | N/A | Click |
| 3 | 3574340..3574621 | hypothetical protein; BP3354 | N/A | Click |
| 4 | complement(3574618..3575133) | PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; BP3355; phage(gi16765210) | 8e-15 | Click |
| 5 | complement(3575133..3575684) | PHAGE_Entero_RTP: putative endolysin; BP3356; phage(gi81343992) | 3e-11 | Click |
| 6 | complement(3575663..3575905) | hypothetical protein; BP3357 | N/A | Click |
| 7 | complement(3575910..3576722) | hypothetical protein; BP3358 | N/A | Click |
| 8 | complement(3576722..3576982) | PHAGE_Rhodob_RcapNL: tail fiber protein; BP3359; phage(gi461474986) | 2e-11 | Click |
| 9 | complement(3577204..3577620) | hypothetical protein; BP3361 | N/A | Click |
| 10 | complement(3577625..3581581) | PHAGE_Burkho_phiE125: putative tail tip fiber protein; BP3362; phage(gi17975182) | 2e-44 | Click |
| 11 | complement(3581574..3581963) | PHAGE_Burkho_BcepGomr: BcepGomrgp21; BP3363; phage(gi146329933) | 2e-29 | Click |
| 12 | complement(3581960..3582493) | PHAGE_Burkho_BcepGomr: BcepGomrgp20; BP3364; phage(gi146329932) | 3e-42 | Click |
| 13 | complement(3582561..3582920) | PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; BP3365; phage(gi374531665) | 3e-05 | Click |
| 14 | complement(3582930..3585542) | PHAGE_Pseudo_MP29: putative tail component protein; BP3366; phage(gi215480016) | 2e-83 | Click |
| 15 | complement(3585568..3585858) | PHAGE_Cronob_phiES15: hypothetical protein; BP3367; phage(gi401817604) | 4e-09 | Click |
| 16 | complement(3585876..3586205) | PHAGE_Cronob_phiES15: hypothetical protein; BP3368; phage(gi401817603) | 2e-13 | Click |
| 17 | complement(3586215..3586733) | PHAGE_Cronob_phiES15: putative major tail protein; BP3369; phage(gi401817602) | 7e-22 | Click |
| 18 | complement(3586988..3587488) | PHAGE_Xantho_phiL7: P07; BP3370; phage(gi238695594) | 3e-30 | Click |
| 19 | complement(3587496..3587918) | PHAGE_Cronob_phiES15: hypothetical protein; BP3371; phage(gi401817601) | 3e-06 | Click |
| 20 | complement(3587915..3588313) | PHAGE_Cronob_phiES15: hypothetical protein; BP3372; phage(gi401817600) | 3e-18 | Click |
| 21 | complement(3588310..3588705) | PHAGE_Cyanop_KBS_S_2A: hypothetical protein; BP3373; phage(gi472341510) | 1e-08 | Click |
| 22 | complement(3588705..3588905) | hypothetical protein; BP3374 | N/A | Click |
| 23 | complement(3588907..3589437) | PHAGE_Pseudo_YuA: structural phage protein; BP3375; phage(gi162135145) | 2e-15 | Click |
| 24 | complement(3589452..3589703) | hypothetical protein; BP3376 | N/A | Click |
| 25 | complement(3591757..3592359) | PHAGE_Cyanop_KBS_S_2A: hypothetical protein; BP3380; phage(gi472341499) | 2e-05 | Click |
Region 4, total : 10 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(3592730..3593785) | PHAGE_Pseudo_MP1412: head morphogenesis/minor structural protein; BP3382; phage(gi399529016) | 3e-56 | Click |
| 2 | complement(3593814..3595232) | PHAGE_Vibrio_vB_VpaS_MAR10: portal protein; BP3383; phage(gi428782116) | 9e-56 | Click |
| 3 | complement(3595235..3596512) | PHAGE_Pseudo_H105/1: phage terminase large subunit; BP3384; phage(gi327198525) | 1e-110 | Click |
| 4 | complement(3596499..3596948) | PHAGE_Riemer_RAP44: hypothetical protein; BP3385; phage(gi418489899) | 2e-22 | Click |
| 5 | complement(3597624..3598574) | PHAGE_Spirop_3x: hypothetical protein SkV1VCR23x_ORF3; BP3386; phage(gi160688404) | 2e-09 | Click |
| 6 | 3598828..3599526 | phage-related putative membrane protein; BP3388 | N/A | Click |
| 7 | 3599519..3599839 | hypothetical protein; BP3389 | N/A | Click |
| 8 | 3600319..3600930 | PHAGE_Pseudo_F10: Repressor protein; BP3390; phage(gi148912804) | 9e-09 | Click |
| 9 | 3600996..3601208 | hypothetical protein; BP3391 | N/A | Click |
| 10 | complement(3601460..3602410) | PHAGE_Spirop_3x: hypothetical protein SkV1VCR23x_ORF3; BP3392; phage(gi160688404) | 2e-09 | Click |