Definition Clostridium botulinum H04402 065, complete genome sequence.
Accession FR773526
Length 3,919,740
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 41 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(2445716..2446303)  PHAGE_Synech_syn9: putative cytosine specific DNA methyl transferase; H04402_02296; phage(gi113200665)  3e-11  Click
2 complement(2446373..2447980)  PHAGE_Helico_2: hypothetical protein; H04402_02297; phage(gi370703037)  3e-13  Click
3 complement(2448136..2449158)  PHAGE_Clostr_phiSM101: autolytic lysozyme; H04402_02298; phage(gi110804057)  2e-39  Click
4 complement(2449194..2449367)  hypothetical protein; H04402_02299  N/A  Click
5 complement(2449380..2449604)  PHAGE_Entero_phiFL4A: holin; H04402_02300; phage(gi281416487)  4e-13  Click
6 complement(2449812..2450975)  transcriptional regulator, MerR family; H04402_02301  N/A  Click
7 complement(2451193..2451315)  hypothetical protein; H04402_02302  N/A  Click
8 complement(2451308..2451700)  PHAGE_Clostr_phiMMP02: hypothetical protein; H04402_02303; phage(gi414090395)  1e-10  Click
9 complement(2451733..2453388)  PHAGE_Clostr_phiMMP02: tail fiber; H04402_02304; phage(gi414090390)  4e-35  Click
10 complement(2453485..2454120)  PHAGE_Clostr_phiMMP02: XkdT-related protein; H04402_02305; phage(gi414090389)  2e-63  Click
11 complement(2454117..2455247)  PHAGE_Clostr_phiMMP02: baseplate J family protein; H04402_02306; phage(gi414090388)  3e-122  Click
12 complement(2455253..2455705)  PHAGE_Clostr_phiMMP02: XkdS-related protein; H04402_02307; phage(gi414090387)  5e-39  Click
13 complement(2455698..2456030)  PHAGE_Clostr_phiMMP02: hypothetical protein; H04402_02308; phage(gi414090386)  5e-24  Click
14 complement(2456014..2456982)  PHAGE_Clostr_phiMMP02: XkdQ-related protein; H04402_02309; phage(gi414090385)  2e-94  Click
15 complement(2456984..2457637)  PHAGE_Clostr_phiMMP02: peptidoglycan-binding LysM protein; H04402_02310; phage(gi414090384)  1e-58  Click
16 complement(2457706..2458218)  hypothetical protein; H04402_02311  N/A  Click
17 complement(2458272..2461250)  PHAGE_Clostr_phiCD6356: putative phage tail tape measure protein; H04402_02312; phage(gi326536862)  2e-103  Click
18 complement(2461255..2461398)  hypothetical protein; H04402_02313  N/A  Click
19 complement(2461434..2461868)  PHAGE_Clostr_phiMMP02: XkdN-related protein; H04402_02314; phage(gi414090380)  8e-36  Click
20 complement(2461892..2462302)  PHAGE_Clostr_phiMMP02: XkdM-related protein; H04402_02315; phage(gi414090379)  5e-20  Click
21 complement(2462315..2463721)  PHAGE_Clostr_phiMMP02: tail sheath; H04402_02316; phage(gi414090378)  2e-153  Click
22 complement(2463721..2463912)  PHAGE_Clostr_phiMMP02: hypothetical protein; H04402_02317; phage(gi414090377)  6e-09  Click
23 complement(2463923..2464744)  PHAGE_Clostr_phiMMP02: hypothetical protein; H04402_02318; phage(gi414090376)  1e-76  Click
24 complement(2464747..2465154)  PHAGE_Clostr_phiMMP02: putative tail component; H04402_02319; phage(gi414090375)  3e-38  Click
25 complement(2465156..2465542)  PHAGE_Clostr_phiMMP02: hypothetical protein; H04402_02320; phage(gi414090374)  3e-19  Click
26 complement(2465543..2465863)  PHAGE_Clostr_phiCTP1: hypothetical protein phiCTP1_gp14; H04402_02321; phage(gi304360676)  1e-15  Click
27 complement(2465866..2466057)  hypothetical protein; H04402_02322  N/A  Click
28 complement(2466114..2467166)  PHAGE_Clostr_phiCTP1: hypothetical phage capsid protein; H04402_02323; phage(gi304360674)  4e-92  Click
29 complement(2467180..2467572)  PHAGE_Clostr_phiCTP1: hypothetical protein phiCTP1_gp11; H04402_02324; phage(gi304360673)  7e-11  Click
30 complement(2467593..2468207)  PHAGE_Clostr_phiCTP1: putative scaffold protein; H04402_02325; phage(gi304360672)  6e-22  Click
31 complement(2468274..2468417)  hypothetical protein; H04402_02326  N/A  Click
32 complement(2468423..2470081)  PHAGE_Clostr_phiMMP02: head morphogenesis protein; H04402_02327; phage(gi414090369)  8e-25  Click
33 complement(2470081..2471607)  PHAGE_Strept_Dp_1: portal protein; H04402_02328; phage(gi327198352)  4e-60  Click
34 complement(2471607..2472959)  PHAGE_Deep_s_D6E: large subunit terminase; H04402_02329; phage(gi423262329)  5e-166  Click
35 complement(2472952..2473869)  PHAGE_Staphy_SpaA1: phage terminase, small subunit; H04402_02330; phage(gi399498865)  4e-88  Click
36 complement(2473961..2474308)  hypothetical protein; H04402_02331  N/A  Click
37 complement(2474439..2475464)  hypothetical protein; H04402_02332  N/A  Click
38 complement(2475535..2475717)  PHAGE_Clostr_st: hypothetical protein CST064; H04402_02333; phage(gi80159750)  3e-10  Click
39 complement(2475783..2475986)  hypothetical protein; H04402_02334  N/A  Click
40 complement(2475940..2476113)  hypothetical protein; H04402_02335  N/A  Click
41 complement(2476213..2477301)  PHAGE_Cronob_phiES15: putative major tail protein; H04402_02336; phage(gi401817602)  7e-13  Click
Region 2, total : 35 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2477400..2477411  attL    TTATTAATTTTT  N/A  Click
2 2477418..2477430  attL    ATAATTAAATTTA  N/A  Click
3 complement(2478529..2479521)  PHAGE_Thermu_26: phage XerD-like integrase; H04402_02340; phage(gi157265417)  1e-23  Click
4 complement(2479598..2479744)  hypothetical protein; H04402_02341  N/A  Click
5 complement(2479878..2480180)  hypothetical protein; H04402_02342  N/A  Click
6 complement(2480214..2480459)  hypothetical protein; H04402_02343  N/A  Click
7 complement(2480489..2480704)  SSU ribosomal protein S22mt, mitochondrial; H04402_02344  N/A  Click
8 complement(2480735..2481718)  hypothetical protein; H04402_02345  N/A  Click
9 complement(2481810..2482157)  PHAGE_Clostr_phiSM101: hypothetical protein; H04402_02346; phage(gi110804067)  1e-23  Click
10 complement(2482244..2482648)  hypothetical protein; H04402_02347  N/A  Click
11 complement(2482636..2483058)  PHAGE_Staphy_StB20: hypothetical protein; H04402_02348; phage(gi431809750)  1e-29  Click
12 complement(2483055..2483216)  hypothetical protein; H04402_02349  N/A  Click
13 complement(2483307..2483687)  PHAGE_Halovi_HVTV_1: MazG-like protein; H04402_02350; phage(gi443404610)  9e-13  Click
14 complement(2483687..2483929)  PHAGE_Bacill_phBC6A51: Transcription state regulatory protein abrB; H04402_02351; phage(gi31415778)  2e-12  Click
15 complement(2483932..2484237)  hypothetical protein; H04402_02352  N/A  Click
16 complement(2484267..2485262)  PHAGE_Clostr_phi3626: putative sigma factor; H04402_02353; phage(gi20065995)  4e-10  Click
17 complement(2485275..2485508)  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp58; H04402_02354; phage(gi209901295)  8e-07  Click
18 complement(2485527..2486330)  PHAGE_Bacill_IEBH: DNA replication protein DnaC; H04402_02355; phage(gi197261519)  2e-43  Click
19 complement(2486290..2487162)  PHAGE_Strept_SM1: gp19; H04402_02356; phage(gi32469450)  8e-46  Click
20 complement(2487185..2487484)  hypothetical protein; H04402_02357  N/A  Click
21 complement(2487578..2487754)  hypothetical protein; H04402_02358  N/A  Click
22 complement(2487770..2487916)  hypothetical protein; H04402_02359  N/A  Click
23 complement(2487919..2488803)  PHAGE_Geobac_GBSV1: DNA-binding phage-related protein; H04402_02360; phage(gi115334612)  9e-39  Click
24 complement(2488816..2489865)  PHAGE_Geobac_GBSV1: YqaJ; H04402_02361; phage(gi115334611)  4e-34  Click
25 complement(2489866..2490201)  hypothetical protein; H04402_02362  N/A  Click
26 complement(2490213..2491943)  PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; H04402_02363; phage(gi9631364)  2e-14  Click
27 complement(2492070..2492228)  hypothetical protein; H04402_02364  N/A  Click
28 2492556..2492747  hypothetical protein; H04402_02365  N/A  Click
29 complement(2492903..2493688)  PHAGE_Lactob_phiAT3: putative antirepressor protein; H04402_02366; phage(gi48697283)  8e-71  Click
30 complement(2493742..2493975)  PHAGE_Staphy_SpaA1: transcriptional regulator, pbsX; H04402_02367; phage(gi399498897)  1e-07  Click
31 2494153..2494617  PHAGE_Geobac_GBSV1: immunity repressor protein; H04402_02368; phage(gi115334658)  2e-15  Click
32 2494664..2494960  PHAGE_Geobac_GBSV1: hypothetical protein GPGV1_gp47; H04402_02369; phage(gi115334657)  3e-19  Click
33 2494941..2495099  PHAGE_Bacill_phi105: hypothetical protein phi105_33; H04402_02370; phage(gi22855026)  1e-05  Click
34 2495242..2496603  PHAGE_Entero_ES18: gp19; H04402_02371; phage(gi62362232)  9e-85  Click
35 complement(2496700..2497836)  hypothetical protein; H04402_02372  N/A  Click
36 complement(2497833..2498378)  hypothetical protein; H04402_02373  N/A  Click
37 2498514..2498526  attR    ATAATTAAATTTA  N/A  Click
38 2498577..2500202  PHAGE_Staphy_StB20: integrase; H04402_02374; phage(gi431809731)  3e-30  Click
39 2502904..2502915  attR    TTATTAATTTTT  N/A  Click
Region 3, total : 64 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2687009..2687021  attL    TACTTTATAATTA  N/A  Click
2 2694565..2694843  PHAGE_Clostr_CD119: RepR; putative repressor; H04402_02576; phage(gi90592681)  2e-13  Click
3 2694930..2695238  PROPHAGE_Ralsto_GMI1000: ISRSO11-transposase ORFA protein; H04402_02577; phage(gi17546156)  3e-05  Click
4 2695320..2695589  PROPHAGE_Escher_MG1655: IS150 transposase B; H04402_02578; phage(gi16131429)  6e-07  Click
5 2695667..2695981  PROPHAGE_Escher_MG1655: IS150 transposase B; H04402_02579; phage(gi16131429)  2e-07  Click
6 complement(2696194..2696439)  hypothetical protein; H04402_02580  N/A  Click
7 complement(2696456..2696644)  PHAGE_Strept_M102: hypothetical protein M102_gp24; H04402_02581; phage(gi242345595)  2e-08  Click
8 complement(2697079..2697846)  PHAGE_Clostr_phi8074_B1: endolysin CS74L; H04402_02582; phage(gi431810380)  1e-29  Click
9 complement(2697889..2698083)  hypothetical protein; H04402_02583  N/A  Click
10 complement(2698104..2698334)  PHAGE_Clostr_phiSM101: hypothetical protein; H04402_02584; phage(gi110804030)  7e-13  Click
11 complement(2698398..2698790)  hypothetical protein; H04402_02585  N/A  Click
12 complement(2698747..2698914)  hypothetical protein; H04402_02586  N/A  Click
13 complement(2699074..2699235)  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp28; H04402_02587; phage(gi209901265)  9e-13  Click
14 complement(2699235..2699603)  hypothetical protein; H04402_02588  N/A  Click
15 complement(2699609..2700793)  PHAGE_Clostr_phiMMP02: tail fiber; H04402_02589; phage(gi414090390)  4e-51  Click
16 complement(2700797..2701423)  PHAGE_Clostr_phiC2: hypothetical protein phiC2p26; H04402_02590; phage(gi134287360)  4e-25  Click
17 complement(2701404..2702498)  PHAGE_Lactob_Lj771: element PBSX protein; H04402_02591; phage(gi163932146)  9e-50  Click
18 complement(2702502..2702909)  PHAGE_Lactob_Lj771: hypothetical protein LJ771_046; H04402_02592; phage(gi163932199)  1e-12  Click
19 complement(2702912..2703256)  PHAGE_Clostr_phiC2: hypothetical protein phiC2p23; H04402_02593; phage(gi134287358)  2e-09  Click
20 complement(2703259..2704233)  PHAGE_Lactob_Lj771: hypothetical protein LJ771_044; H04402_02594; phage(gi163932197)  2e-18  Click
21 complement(2704245..2704925)  PHAGE_Clostr_phiC2: putative LysM; H04402_02595; phage(gi134287356)  8e-28  Click
22 complement(2704926..2707085)  PHAGE_Clostr_phiC2: putative tail tape measure protein; H04402_02596; phage(gi134287355)  8e-104  Click
23 complement(2707175..2707753)  hypothetical protein; H04402_02597  N/A  Click
24 complement(2707994..2708407)  PHAGE_Lactob_Lj771: hypothetical protein LJ771_041; H04402_02598; phage(gi163932194)  5e-12  Click
25 complement(2708423..2708887)  PHAGE_Lactob_Lj771: sheath tail protein; H04402_02599; phage(gi163932193)  3e-22  Click
26 complement(2708891..2710201)  PHAGE_Lactob_Lj771: hypothetical protein LJ771_039; H04402_02600; phage(gi163932192)  3e-58  Click
27 complement(2710203..2710373)  PHAGE_Lactob_Lj771: hypothetical protein LJ771_038; H04402_02601; phage(gi163932191)  2e-05  Click
28 complement(2710363..2710794)  PHAGE_Lactob_Lj771: hypothetical protein LJ771_037; H04402_02602; phage(gi163932190)  2e-05  Click
29 complement(2710796..2711287)  PHAGE_Lactob_Lj771: hypothetical protein LJ771_036; H04402_02603; phage(gi163932189)  2e-07  Click
30 complement(2711676..2712035)  PHAGE_Lactob_Lj771: hypothetical protein LJ771_034; H04402_02605; phage(gi163932187)  7e-08  Click
31 complement(2712040..2713107)  PHAGE_Clostr_phiCD38_2: phage coat protein; H04402_02606; phage(gi333798114)  9e-129  Click
32 complement(2713130..2713699)  PHAGE_Lactob_Lj771: scaffolding protein SbcC-like protein; H04402_02607; phage(gi163932185)  1e-16  Click
33 complement(2713720..2713983)  PHAGE_Bacill_SPP1: hypothetical protein SPP1p009; H04402_02608; phage(gi22855054)  1e-19  Click
34 complement(2714000..2714368)  PHAGE_Bacill_BCP78: hypothetical protein; H04402_02609; phage(gi410492926)  2e-13  Click
35 complement(2714399..2714593)  hypothetical protein; H04402_02610  N/A  Click
36 complement(2714626..2716416)  PHAGE_Clostr_phiC2: putative head morphogenesis protein; H04402_02611; phage(gi134287339)  8e-79  Click
37 complement(2716406..2717848)  PHAGE_Clostr_phiC2: putative portal protein; H04402_02612; phage(gi134287338)  7e-78  Click
38 complement(2717862..2719271)  PHAGE_Lactoc_1: TerL; H04402_02613; phage(gi13786562)  4e-159  Click
39 complement(2719264..2719857)  PHAGE_Lactob_Lj928: putative portal protein; H04402_02614; phage(gi41179313)  2e-16  Click
40 complement(2719956..2720147)  hypothetical protein; H04402_02615  N/A  Click
41 complement(2720334..2720771)  PHAGE_Clostr_phiSM101: probable sigma factor; H04402_02616; phage(gi110804038)  5e-17  Click
42 complement(2721347..2722522)  PHAGE_Strept_6: putative DNA primase/helicase; H04402_02617; phage(gi28876472)  1e-37  Click
43 complement(2722491..2723213)  PHAGE_Lister_P40: gp32; H04402_02618; phage(gi207270806)  7e-10  Click
44 complement(2723581..2724375)  PHAGE_Clostr_phiCTP1: hypothetical protein phiCTP1_gp74; H04402_02619; phage(gi304360736)  2e-15  Click
45 complement(2724388..2724537)  hypothetical protein; H04402_02620  N/A  Click
46 complement(2724640..2725623)  hypothetical protein; H04402_02621  N/A  Click
47 complement(2725723..2727417)  PHAGE_Lister_P35: gp33; H04402_02622; phage(gi157325398)  1e-51  Click
48 complement(2727417..2727605)  hypothetical protein; H04402_02623  N/A  Click
49 complement(2727657..2728115)  hypothetical protein; H04402_02624  N/A  Click
50 complement(2728116..2728436)  hypothetical protein; H04402_02625  N/A  Click
51 complement(2728436..2730232)  PHAGE_Strept_PH15: putative NTP-binding protein; H04402_02626; phage(gi190151434)  9e-11  Click
52 complement(2730237..2730404)  hypothetical protein; H04402_02627  N/A  Click
53 complement(2730410..2731213)  PHAGE_Clostr_st: hypothetical protein CST053; H04402_02628; phage(gi80159739)  2e-48  Click
54 complement(2731206..2731535)  hypothetical protein; H04402_02629  N/A  Click
55 complement(2731540..2731836)  PHAGE_Thermo_THSA_485A: VRR-NUC domain-containing protein; H04402_02630; phage(gi397912645)  2e-15  Click
56 complement(2731836..2732651)  PHAGE_Lactob_Lj771: hypothetical protein LJ771_008; H04402_02631; phage(gi163932160)  2e-16  Click
57 complement(2732652..2733752)  PHAGE_Thermo_THSA_485A: SNF2-related protein; H04402_02632; phage(gi397912655)  2e-32  Click
58 complement(2733805..2733921)  hypothetical protein; H04402_02633  N/A  Click
59 complement(2733912..2734082)  hypothetical protein; H04402_02634  N/A  Click
60 complement(2734204..2734317)  hypothetical protein; H04402_02635  N/A  Click
61 complement(2734339..2734536)  PHAGE_Thermo_THSA_485A: transcriptional regulator, XRE family; H04402_02636; phage(gi397912660)  6e-07  Click
62 2734758..2735201  PHAGE_Thermo_THSA_485A: transcriptional regulator, XRE family; H04402_02637; phage(gi397912660)  2e-08  Click
63 2735221..2735676  PHAGE_Geobac_GBSV1: hypothetical protein GPGV1_gp47; H04402_02638; phage(gi115334657)  2e-07  Click
64 2735755..2735767  attR    TACTTTATAATTA  N/A  Click
65 2735819..2737597  PHAGE_Bacill_SPBc2: site-specific recombinase; H04402_02639; phage(gi9630126)  7e-50  Click
66 complement(2737505..2737939)  PHAGE_Bacill_vB_BceM_Bc431v3: putative RNA polymerase sigma factor G; H04402_02640; phage(gi472437547)  3e-13  Click
Region 4, total : 16 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 3127367..3127381  attL    ATTTTTATATTTATA  N/A  Click
2 complement(3140614..3142776)  PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; H04402_03012; phage(gi9631364)  2e-09  Click
3 complement(3143085..3143837)  PHAGE_Staphy_JD007: glycerophosphoryl diester phosphodiesterase; H04402_03013; phage(gi428783010)  2e-25  Click
4 complement(3144217..3144468)  membrane associated protein; H04402_03014  N/A  Click
5 complement(3144591..3145160)  PHAGE_Megavi_chiliensis: putative KilA-N domain-containing protein; H04402_03015; phage(gi363540460)  6e-05  Click
6 3145637..3146890  PHAGE_Parame_NY2A: hypothetical protein NY2A_B796L; H04402_03016; phage(gi157953100)  7e-25  Click
7 complement(3147289..3147765)  hypothetical protein; H04402_03017  N/A  Click
8 3148028..3148180  PHAGE_Clostr_CD119: putative integrase; H04402_03018; phage(gi90592679)  2e-06  Click
9 complement(3148658..3149392)  PHAGE_Glossi_virus: hypothetical protein SGHV062; H04402_03019; phage(gi168804078)  4e-09  Click
10 complement(3149531..3150334)  Hypothetical protein; H04402_03021  N/A  Click
11 complement(3150353..3151015)  putative tRNA-m1A22 methylase; H04402_03022  N/A  Click
12 complement(3151091..3151978)  conserved protein; H04402_03023  N/A  Click
13 complement(3152053..3153138)  PHAGE_Cyanop_KBS_S_2A: RNA polymerase sigma factor RpoD; H04402_03024; phage(gi472341467)  1e-40  Click
14 complement(3153163..3154935)  PHAGE_Helico_phiHP33: DNA primase; H04402_03025; phage(gi371671350)  2e-38  Click
15 complement(3155218..3156246)  PHAGE_Cafete_BV_PW1: putative HD superfamily phosphohydrolase; H04402_03026; phage(gi310831117)  6e-05  Click
16 3156388..3156888  spore coat protein S; H04402_03027  N/A  Click
17 3156869..3157459  spore coat protein S; H04402_03028  N/A  Click
18 complement(3157512..3160145)  PHAGE_Vibrio_SIO_2: hypothetical protein; H04402_03029; phage(gi371496391)  5e-71  Click
19 3161101..3161115  attR    ATTTTTATATTTATA  N/A  Click
Region 5, total : 10 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(3299679..3300425)  PHAGE_Aeromo_phiAS5: hypothetical protein; H04402_03183; phage(gi310722663)  5e-10  Click
2 complement(3300525..3301634)  putative GFO/IDH/MocA oxidoreductase family; H04402_03184  N/A  Click
3 complement(3301697..3303013)  PHAGE_Parame_NY2A: hypothetical protein NY2A_B465R; H04402_03185; phage(gi157952769)  5e-43  Click
4 complement(3303143..3305008)  PHAGE_Megavi_lba: putative dTDP-d-glucose 4 6-dehydratase; H04402_03186; phage(gi448825504)  2e-30  Click
5 complement(3305364..3305528)  transposase; H04402_03187  N/A  Click
6 complement(3305812..3306831)  PHAGE_Staphy_phiPVL108: putative transposase; H04402_03188; phage(gi119443708)  4e-43  Click
7 complement(3306937..3307767)  PHAGE_Bacill_PM1: hypothetical protein; H04402_03189; phage(gi472438330)  7e-19  Click
8 complement(3307872..3309833)  PHAGE_Bacill_BCD7: putative cell wall hydrolase/autolysin; H04402_03190; phage(gi422936020)  6e-16  Click
9 complement(3310028..3312313)  PHAGE_Deep_s_D6E: lysin; H04402_03191; phage(gi423262347)  9e-27  Click
10 complement(3312492..3314060)  PHAGE_Staphy_TEM123: cell wall hydrolase; H04402_03192; phage(gi388570330)  3e-36  Click