Definition Thiomonas sp. str. 3As chromosome, complete genome.
Accession FP475956
Length 3,738,778
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 29 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1913915..1915279  PHAGE_Psychr_pOW20_A: DNA methylase; THI_1939; phage(gi472339820)  4e-58  Click
2 1915276..1916541  PHAGE_Psychr_pOW20_A: DNA methylase; THI_1940; phage(gi472339820)  3e-77  Click
3 complement(1916505..1916870)  PHAGE_Pseudo_MP1412: hypothetical protein; THI_1941; phage(gi399528997)  7e-05  Click
4 complement(1916967..1917497)  conserved hypothetical protein; putative C-terminal effector domain of the bipartite response regulator; THI_1942  N/A  Click
5 1917595..1917978  PHAGE_Burkho_phiE125: putative class I holin; THI_1943; phage(gi17975232)  2e-14  Click
6 complement(1918043..1918597)  hypothetical protein; THI_1944  N/A  Click
7 1918746..1919246  PHAGE_Burkho_phiE125: putative terminase (small subunit); THI_1945; phage(gi17975162)  3e-06  Click
8 complement(1919291..1919701)  putative Virulence-associated protein C (VapC protein); THI_1946  N/A  Click
9 complement(1919698..1919934)  putative Virulence-associated protein vapB; THI_1947  N/A  Click
10 1919968..1921713  PHAGE_Burkho_phiE125: putative terminase (large subunit); THI_1948; phage(gi17975163)  7e-114  Click
11 1921713..1921916  hypothetical protein; putative transporter; THI_1949  N/A  Click
12 1921916..1923229  PHAGE_Burkho_phiE125: putative portal protein; THI_1950; phage(gi17975165)  3e-110  Click
13 1923222..1924145  PHAGE_Burkho_phiE125: putative capsid assembly protein/protease; THI_1951; phage(gi17975166)  8e-49  Click
14 1924270..1925766  PHAGE_Burkho_phiE125: putative major capsid protein; THI_1952; phage(gi17975167)  5e-91  Click
15 1925824..1925997  hypothetical protein; THI_1953  N/A  Click
16 1926004..1926687  PHAGE_Burkho_phiE125: hypothetical protein phiE125p08; THI_1954; phage(gi17975169)  4e-26  Click
17 1926688..1927050  PHAGE_Pseudo_PAJU2: putative head-tail adaptor; THI_1955; phage(gi209552428)  3e-06  Click
18 1927047..1927493  PHAGE_Burkho_phiE125: hypothetical protein phiE125p10; THI_1956; phage(gi17975171)  7e-08  Click
19 1927490..1927849  conserved hypothetical protein; THI_1957  N/A  Click
20 1927860..1928360  Putative Gp11 protein (phage-related protein); THI_1958  N/A  Click
21 1928367..1928708  hypothetical protein; THI_1959  N/A  Click
22 1928843..1929091  hypothetical protein; THI_1960  N/A  Click
23 1929101..1931968  PHAGE_Synech_S_CBS1: tail tape measure protein; putative; phage tail length tape measure protein; THI_1961(gi356870809)  3e-29  Click
24 1931979..1932329  PHAGE_Entero_mEp460: minor tail protein; THI_1962; phage(gi428782330)  6e-12  Click
25 1932375..1933073  PHAGE_Burkho_phiE125: putative minor tail protein; THI_1963; phage(gi17975179)  5e-44  Click
26 1933070..1933789  PHAGE_Burkho_phiE125: putative tail component protein; THI_1964; phage(gi17975180)  1e-56  Click
27 1933786..1934454  PHAGE_Entero_HK578: tail assembly protein; THI_1965; phage(gi428782878)  6e-29  Click
28 1934454..1938158  PHAGE_Burkho_phiE125: putative tail tip fiber protein; THI_1966; phage(gi17975182)  1e-155  Click
29 1938180..1939694  PHAGE_Synech_S_CBS4: tail fiber protein; THI_1967; phage(gi374531790)  6e-11  Click
Region 2, total : 22 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 3103487..3103499  attL    CGCAGGAGCCCGA  N/A  Click
2 3108237..3111845  PHAGE_Bacill_36: PcrA helicase; THI_3190; phage(gi156564011)  7e-16  Click
3 3111842..3113917  PHAGE_Acinet_Ac42: Dda DNA helicase; THI_3191; phage(gi311992518)  2e-07  Click
4 3113914..3114480  Transcription elongation factor greB (Transcript cleavage factor greB); THI_3192  N/A  Click
5 complement(3114506..3116881)  PHAGE_Salmon_SSU5: putative guanosine polyphosphate pyrophospho hydrolase/synthetase; THI_3193; phage(gi410491509)  3e-13  Click
6 complement(3116889..3117092)  putative DNA-directed RNA polymerase omega chain (RNAP omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit); THI_3194  N/A  Click
7 complement(3117110..3117736)  PHAGE_Cowpox_virus: CPXV195 protein; THI_3195; phage(gi20178555)  3e-18  Click
8 complement(3117750..3118652)  conserved hypothetical protein; THI_3196  N/A  Click
9 3118712..3119791  PHAGE_Entero_Min27: serine/threonine kinase; THI_3197; phage(gi170783632)  3e-15  Click
10 3119788..3120711  PHAGE_Plankt_PaV_LD: protein phosphatase; THI_3198; phage(gi371496161)  6e-07  Click
11 3120735..3121466  Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase); THI_3199  N/A  Click
12 3121502..3122230  PHAGE_Uganda_virus: polyprotein; THI_3200; phage(gi314998982)  4e-08  Click
13 3122337..3123539  putative Coproporphyrinogen III oxidase; THI_3202  N/A  Click
14 3123577..3123664  tRNA  N/A  Click
15 3123893..3123997  hypothetical protein; THI_3203  N/A  Click
16 3124091..3124312  putative Excisionase/Xis; THI_3204  N/A  Click
17 3124555..3124824  hypothetical protein; THI_3205  N/A  Click
18 complement(3125085..3125324)  hypothetical protein; THI_3206  N/A  Click
19 complement(3125418..3125999)  conserved hypothetical protein; putative membrane protein; THI_3207  N/A  Click
20 3126281..3127201  conserved hypothetical protein; THI_3208  N/A  Click
21 3127410..3127928  putative bacterial outer membrane protein OmpA/MotB; THI_3209  N/A  Click
22 complement(3127956..3128318)  hypothetical protein; putative exported protein; THI_3210  N/A  Click
23 3128637..3128891  conserved hypothetical protein; putative exported protein; THI_3211  N/A  Click
24 3128969..3129184  hypothetical protein; THI_3212  N/A  Click
25 3129318..3129330  attR    CGCAGGAGCCCGA  N/A  Click
26 complement(3129436..3130674)  PROPHAGE_Escher_CFT073: P4 family integrase; THI_3213; phage(gi26248244)  5e-81  Click