Definition Clostridium difficile BI1 chromosome, complete sequence.
Accession FN668941
Length 4,118,573
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 17 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 285836..286534  PHAGE_Prochl_Syn1: phosphoribosylaminoimidazole-succinocarboxamide synthase; PP_00235; phage(gi326784002)  2e-48  Click
2 286546..287913  PHAGE_Parame_FR483: hypothetical protein FR483_N035R; PP_00236; phage(gi155370133)  6e-22  Click
3 287907..288983  PHAGE_Synech_S_SKS1: glycinamide ribonucleotide formyltransferase; PP_00237; phage(gi472340860)  3e-64  Click
4 288977..289570  PHAGE_Burkho_phiE255: gp30, formyl transferase, putative; PP_00238; phage(gi134288807)  1e-06  Click
5 289563..291095  PHAGE_Prochl_P_SSM2: 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase; PP_00239; phage(gi61806062)  5e-61  Click
6 291106..292356  phosphoribosylamine--glycine ligase [Clostridium difficile R20291] gi|260685596|ref|YP_003216729.1|; PP_00240  0.0  Click
7 292381..296187  PHAGE_Microb_Min1: putative phosphoribosyl formylglycinamidine (FGAM) synthase II; PP_00241; phage(gi149882852)  4e-36  Click
8 296393..297265  PHAGE_Escher_phAPEC8: putative dTDP-4-dehydrorhamnose reductase; PP_00242; phage(gi448260370)  1e-34  Click
9 297374..298255  PHAGE_Escher_phAPEC8: putative glucose-1-phosphate thymidylyltransferase; PP_00243; phage(gi448260372)  2e-97  Click
10 298292..298849  PHAGE_Escher_phAPEC8: putative dTDP-4-dehydrorhamnose 3,5-epimerase; PP_00244; phage(gi448260371)  3e-46  Click
11 298887..299870  PHAGE_Escher_phAPEC8: putative dTDP-glucose 4,6-dehydratase; PP_00245; phage(gi448260373)  2e-73  Click
12 299909..300577  PHAGE_Pseudo_KPP12: putative lytic tail protein; PP_00246; phage(gi431811119)  5e-17  Click
13 300586..301014  hypothetical protein CDR20291_0228 [Clostridium difficile R20291] gi|260685603|ref|YP_003216736.1|; PP_00247  2e-73  Click
14 301038..301352  flagellar motor switch protein [Clostridium difficile R20291] gi|260685604|ref|YP_003216737.1|; PP_00248  1e-50  Click
15 301504..301779  PHAGE_Cafete_BV_PW1: putative RecQ-like ATP-dependent DNA helicase; PP_00249; phage(gi310831032)  9e-05  Click
16 301784..302200  flagellar biosynthesis protein [Clostridium difficile R20291] gi|260685606|ref|YP_003216739.1|; PP_00250  5e-71  Click
17 302218..303528  PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; PP_00251; phage(gi9631364)  4e-08  Click
Region 2, total : 8 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 465333..466688  PHAGE_Acanth_moumouvirus: SAM-dependent methyltransferase; PP_00408; phage(gi441432344)  3e-31  Click
2 466669..466680  attL    TTAAACTTATTA  N/A  Click
3 complement(466770..466916)  PHAGE_Strept_5093: integrase; PP_00409; phage(gi238801921)  4e-05  Click
4 467012..467167  transposase mutator type [Clostridium difficile R20291] gi|260688631|ref|YP_003219765.1|; PP_00410  7e-12  Click
5 467211..468245  hypothetical protein CDR20291_0379 [Clostridium difficile R20291] gi|260685753|ref|YP_003216886.1|; PP_00411  0.0  Click
6 468332..468535  PHAGE_Clostr_phiCD38_2: hypothetical protein; PP_00412; phage(gi333798122)  1e-18  Click
7 468706..469866  PHAGE_Bacill_36: low copy number virion structural protein; PP_00413; phage(gi156564190)  9e-08  Click
8 complement(470397..471002)  PROPHAGE_Ralsto_GMI1000: isrso11-transposase orfb protein; PP_00414; phage(gi17546155)  4e-36  Click
9 complement(471290..471961)  PROPHAGE_Ralsto_GMI1000: ISRSO11-transposase ORFA protein; PP_00415; phage(gi17546156)  3e-07  Click
10 478959..478970  attR    TTAAACTTATTA  N/A  Click
Region 3, total : 30 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1440158..1440358  PHAGE_Lactoc_bIL312: Csp; PP_01274; phage(gi13095918)  6e-17  Click
2 1440779..1441207  regulatory protein [Clostridium difficile R20291] gi|260686563|ref|YP_003217696.1|; PP_01275  4e-77  Click
3 complement(1441350..1442105)  peptidyl-prolyl isomerase [Clostridium difficile R20291] gi|260686564|ref|YP_003217697.1|; PP_01276  6e-137  Click
4 complement(1442226..1442360)  hypothetical protein CDR20291_1200 [Clostridium difficile R20291] gi|260686565|ref|YP_003217698.1|; PP_01277  2e-16  Click
5 complement(1442806..1443312)  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp43; PP_01278; phage(gi209901280)  3e-10  Click
6 complement(1443394..1443714)  PHAGE_Staphy_SpaA1: XRE family transcriptional regulator; PP_01279; phage(gi399498895)  9e-13  Click
7 1443883..1444080  PHAGE_Staphy_phiETA: hypothetical protein phiETA_10; PP_01280; phage(gi17426238)  6e-06  Click
8 1444185..1444625  PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp73; PP_01281; phage(gi90592709)  8e-38  Click
9 1444874..1445317  PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp13; PP_01282; phage(gi90592649)  4e-24  Click
10 1445322..1446386  PHAGE_Clostr_phiMMP04: tail sheath; PP_01283; phage(gi414090451)  2e-69  Click
11 1446400..1446828  PHAGE_Clostr_phiMMP04: XkdM-related protein; PP_01284; phage(gi414090452)  8e-08  Click
12 1446942..1447388  PHAGE_Clostr_CD119: XkdN protein; PP_01285; phage(gi90592652)  4e-15  Click
13 1447466..1447582  hypothetical protein CDR20291_1209 [Clostridium difficile R20291] gi|260686574|ref|YP_003217707.1|; PP_01286  1e-14  Click
14 1447582..1450035  PHAGE_Clostr_phiMMP04: tail tape measure; PP_01287; phage(gi414090455)  2e-22  Click
15 1450035..1450457  PHAGE_Clostr_phiMMP04: peptidoglycan-binding lysin domain protein; PP_01288; phage(gi414090456)  2e-47  Click
16 1450739..1452268  PHAGE_Clostr_phiMMP04: cell wall hydrolase; PP_01289; phage(gi414090458)  2e-121  Click
17 1452284..1452610  PHAGE_Clostr_phiMMP04: hypothetical protein; PP_01290; phage(gi414090459)  3e-55  Click
18 1452610..1453038  PHAGE_Clostr_phiMMP04: XkdS-related protein; PP_01291; phage(gi414090460)  1e-63  Click
19 1453031..1454083  PHAGE_Clostr_phiMMP04: baseplate J-like assembly protein; PP_01292; phage(gi414090461)  1e-140  Click
20 1454080..1454778  PHAGE_Clostr_phiMMP04: hypothetical protein; PP_01293; phage(gi414090462)  2e-52  Click
21 1454779..1455765  PHAGE_Clostr_phiMMP04: tail fiber; PP_01294; phage(gi414090463)  1e-49  Click
22 1455787..1460964  PHAGE_Bathyc_BpV1: hypothetical protein; PP_01295; phage(gi313768166)  3e-20  Click
23 1460981..1461334  hypothetical protein CDR20291_1219 [Clostridium difficile R20291] gi|260686584|ref|YP_003217717.1|; PP_01296  2e-13  Click
24 1461597..1461857  PHAGE_Clostr_phiCD38_2: putative holin; PP_01297; phage(gi333798129)  4e-37  Click
25 complement(1462082..1462537)  hypothetical protein CDR20291_1221 [Clostridium difficile R20291] gi|260686586|ref|YP_003217719.1|; PP_01298  1e-78  Click
26 complement(1462765..1463184)  PHAGE_Strept_3: putative cI-like repressor; PP_01299; phage(gi28876313)  6e-08  Click
27 1463483..1463692  PHAGE_Bacill_BCJA1c: cro; PP_01300; phage(gi56694875)  4e-08  Click
28 1463724..1463933  hypothetical protein CDR20291_1224 [Clostridium difficile R20291] gi|260686589|ref|YP_003217722.1|; PP_01301  8e-33  Click
29 complement(1464150..1464548)  PHAGE_Lister_A118: putative repressor protein; PP_01302; phage(gi16798819)  1e-08  Click
30 complement(1464969..1467461)  PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; PP_01303; phage(gi9631364)  2e-12  Click
Region 4, total : 71 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1682995..1683014  attL    TATTACAACTTAAGTAAATA  N/A  Click
2 complement(1683199..1684329)  PHAGE_Clostr_phiC2: putative integrase; PP_01499; phage(gi134287379)  3e-137  Click
3 complement(1684408..1685115)  hypothetical protein CDR20291_1416 [Clostridium difficile R20291] gi|260686780|ref|YP_003217913.1|; PP_01500  1e-135  Click
4 complement(1685128..1685997)  HipA-like protein [Clostridium difficile R20291] gi|260686781|ref|YP_003217914.1|; PP_01501  2e-168  Click
5 complement(1686617..1687123)  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp43; PP_01502; phage(gi209901280)  4e-09  Click
6 complement(1687199..1687747)  PHAGE_Clostr_phiC2: putative repressor; PP_01503; phage(gi134287382)  1e-19  Click
7 complement(1687759..1688100)  PHAGE_Clostr_phiC2: putative repressor; PP_01504; phage(gi134287382)  2e-11  Click
8 1688277..1688480  PHAGE_Strept_Sfi21: cro-repressor; PP_01505; phage(gi9632966)  4e-07  Click
9 1688528..1689337  PHAGE_Staphy_88: ORF019; PP_01506; phage(gi66396351)  2e-57  Click
10 1689384..1689593  hypothetical; PP_01507  N/A  Click
11 complement(1689603..1689977)  hypothetical protein Desmer_1153 [Desulfosporosinus meridiei DSM 13257] gi|402571698|ref|YP_006621041.1|; PP_01508  3e-14  Click
12 1690053..1690250  PHAGE_Clostr_phiC2: putative repressor; PP_01509; phage(gi134287390)  5e-19  Click
13 1690281..1690673  PHAGE_Clostr_phiC2: hypothetical protein phiC2p59; PP_01510; phage(gi134287391)  7e-21  Click
14 1690660..1690803  hypothetical; PP_01511  N/A  Click
15 1690874..1691311  PHAGE_Entero_phiFL4A: hypothetical protein; PP_01512; phage(gi281416448)  1e-08  Click
16 1691323..1692489  PHAGE_Staphy_phi2958PVL: hypothetical protein phi2958PVL_gp17; PP_01513; phage(gi209363569)  3e-100  Click
17 1692504..1692839  hypothetical protein H04402_02629 [Clostridium botulinum H04402 065] gi|387818822|ref|YP_005679169.1|; PP_01514  5e-08  Click
18 1692892..1693464  hypothetical protein CDR20291_1422 [Clostridium difficile R20291] gi|260686786|ref|YP_003217919.1|; PP_01515  3e-105  Click
19 1693487..1694059  PHAGE_Bacill_PBC1: hypothetical protein; PP_01516; phage(gi389060352)  2e-52  Click
20 1694059..1696017  PHAGE_Bacill_PBC1: DNA polymerase; PP_01517; phage(gi389060355)  0.0  Click
21 1696029..1698446  PHAGE_Entero_phiFL4A: VirE domain protein; PP_01518; phage(gi281416460)  0.0  Click
22 1698430..1698555  hypothetical; PP_01519  N/A  Click
23 1698728..1699054  PHAGE_Staphy_2638A: ORF037; PP_01520; phage(gi66395482)  3e-15  Click
24 1699084..1700373  PHAGE_Entero_phiFL4A: DNA helicase; PP_01521; phage(gi281416462)  9e-148  Click
25 1700397..1700534  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp67; PP_01522; phage(gi209901304)  9e-05  Click
26 1700527..1701006  PHAGE_Clostr_PhiS63: gp40; PP_01523; phage(gi388570666)  1e-40  Click
27 1701289..1701741  PHAGE_Clostr_phiMMP02: phage repressor; PP_01524; phage(gi414090441)  2e-71  Click
28 1702033..1703007  hypothetical protein CDR20291_1429 [Clostridium difficile R20291] gi|260686793|ref|YP_003217926.1|; PP_01525  0.0  Click
29 1703028..1703537  hypothetical protein CDR20291_1430 [Clostridium difficile R20291] gi|260686794|ref|YP_003217927.1|; PP_01526  3e-89  Click
30 1703607..1704299  PHAGE_Clostr_phiC2: putative terminase small subunit; PP_01527; phage(gi134287336)  1e-126  Click
31 1704289..1705530  PHAGE_Clostr_phiC2: putative terminase large subunit; PP_01528; phage(gi134287337)  0.0  Click
32 1705536..1706978  PHAGE_Clostr_phiC2: putative portal protein; PP_01529; phage(gi134287338)  0.0  Click
33 1706968..1708503  PHAGE_Clostr_phiC2: putative head morphogenesis protein; PP_01530; phage(gi134287339)  0.0  Click
34 1708505..1708753  hypothetical; PP_01531  N/A  Click
35 1708821..1709384  PHAGE_Clostr_phiC2: putative scaffold protein; PP_01532; phage(gi134287341)  4e-104  Click
36 1709396..1710286  PHAGE_Clostr_phiC2: putative main capsid protein; PP_01533; phage(gi134287342)  5e-168  Click
37 1710305..1710538  PHAGE_Clostr_phiC2: hypothetical protein phiC2p08; PP_01534; phage(gi134287343)  1e-34  Click
38 1710548..1710949  PHAGE_Clostr_phiC2: hypothetical protein phiC2p09; PP_01535; phage(gi134287344)  2e-69  Click
39 1710943..1711290  PHAGE_Clostr_phiC2: hypothetical protein phiC2p10; PP_01536; phage(gi134287345)  3e-59  Click
40 1711290..1711580  PHAGE_Clostr_phiC2: hypothetical protein phiC2p11; PP_01537; phage(gi134287346)  1e-46  Click
41 1711690..1712496  PHAGE_Clostr_phiCP26F: hypothetical protein; PP_01538; phage(gi422933952)  2e-50  Click
42 1712845..1713282  PHAGE_Clostr_phiC2: hypothetical protein phiC2p12; PP_01539; phage(gi134287347)  8e-78  Click
43 1713275..1713451  hypothetical protein Sterm_1436 [Sebaldella termitidis ATCC 33386] gi|269120052|ref|YP_003308229.1|; PP_01540  3e-06  Click
44 1713452..1714762  PHAGE_Clostr_phiC2: putative sheath tail protein; PP_01541; phage(gi134287348)  0.0  Click
45 1714779..1715249  PHAGE_Clostr_phiC2: putative core tail; PP_01542; phage(gi134287349)  5e-73  Click
46 1715308..1716135  PHAGE_Clostr_phiCP26F: hypothetical protein; PP_01543; phage(gi422933952)  5e-42  Click
47 1716207..1716647  PHAGE_Clostr_phiC2: hypothetical protein phiC2p16; PP_01544; phage(gi134287351)  2e-49  Click
48 1716722..1716841  hypothetical; PP_01545  N/A  Click
49 1718486..1718674  hypothetical; PP_01546  N/A  Click
50 1718793..1719659  PHAGE_Lactob_Lj965: putative antirepressor; PP_01547; phage(gi41179234)  1e-07  Click
51 1719712..1719846  hypothetical; PP_01548  N/A  Click
52 1720524..1721051  PHAGE_Clostr_phiC2: hypothetical protein phiC2p18; PP_01549; phage(gi134287353)  4e-93  Click
53 1721189..1721956  PHAGE_Thermo_THSA_485A: hypothetical protein; PP_01550; phage(gi397912628)  4e-35  Click
54 1722022..1724394  PHAGE_Clostr_phiC2: putative tail tape measure protein; PP_01551; phage(gi134287355)  2e-166  Click
55 1724411..1725100  PHAGE_Clostr_phiC2: putative LysM; PP_01552; phage(gi134287356)  1e-109  Click
56 1725093..1726985  PHAGE_Clostr_phiC2: putative hydrolase; PP_01553; phage(gi134287357)  0.0  Click
57 1726999..1727259  PHAGE_Clostr_phiC2: hypothetical protein phiC2p23; PP_01554; phage(gi134287358)  1e-35  Click
58 1727264..1727683  PHAGE_Strept_1: hypothetical protein EJ-1p60; PP_01555; phage(gi39653734)  6e-21  Click
59 1727684..1728733  PHAGE_Clostr_phiC2: hypothetical protein phiC2p25; PP_01556; phage(gi134287359)  0.0  Click
60 1728726..1729343  PHAGE_Clostr_phiC2: hypothetical protein phiC2p26; PP_01557; phage(gi134287360)  1e-114  Click
61 1729355..1730380  PHAGE_Clostr_phiC2: putative tail fiber protein; PP_01558; phage(gi134287361)  2e-166  Click
62 1730397..1731923  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp26; PP_01559; phage(gi209901263)  1e-94  Click
63 1731938..1732231  PHAGE_Clostr_phiCD6356: hypothetical protein; PP_01560; phage(gi326536870)  2e-40  Click
64 1732231..1732413  PHAGE_Clostr_phiC2: hypothetical protein phiC2p34; PP_01561; phage(gi134287367)  3e-26  Click
65 1732447..1733013  PHAGE_Clostr_phiC2: hypothetical protein phiC2p30; PP_01562; phage(gi134287363)  5e-12  Click
66 1733044..1733334  PHAGE_Staphy_SpaA1: hypothetical secreted or membrane protein; PP_01563; phage(gi399498883)  3e-08  Click
67 1733338..1733595  PHAGE_Clostr_phiC2: holin; PP_01564; phage(gi134287369)  1e-43  Click
68 1733856..1734626  PHAGE_Clostr_phiC2: putative abortive infection bacteriophage resistance protein ORF 37; PP_01565; phage(gi134287370)  5e-147  Click
69 1734797..1735609  PHAGE_Clostr_phiC2: putative amidase/endolysin; PP_01566; phage(gi134287371)  2e-143  Click
70 1735703..1738102  PHAGE_Amsact_: Possible surface protein; PP_01567; phage(gi9964577)  1e-22  Click
71 complement(1738143..1738328)  PHAGE_Clostr_phiCD6356: hypothetical protein; PP_01568; phage(gi326536880)  1e-10  Click
72 complement(1738557..1738685)  PHAGE_Clostr_phiMMP04: hypothetical protein; PP_01569; phage(gi414090472)  2e-10  Click
73 1738969..1738988  attR    TATTACAACTTAAGTAAATA  N/A  Click