Definition | Clostridium difficile BI1 chromosome, complete sequence. |
---|---|
Accession | FN668941 |
Length | 4,118,573 |
Legend
Hits against Virus and prophage DB | |
Hits against Bacterial DB or GenBank file |
Region 1, total : 17 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 285836..286534 | PHAGE_Prochl_Syn1: phosphoribosylaminoimidazole-succinocarboxamide synthase; PP_00235; phage(gi326784002) | 2e-48 | Click |
2 | 286546..287913 | PHAGE_Parame_FR483: hypothetical protein FR483_N035R; PP_00236; phage(gi155370133) | 6e-22 | Click |
3 | 287907..288983 | PHAGE_Synech_S_SKS1: glycinamide ribonucleotide formyltransferase; PP_00237; phage(gi472340860) | 3e-64 | Click |
4 | 288977..289570 | PHAGE_Burkho_phiE255: gp30, formyl transferase, putative; PP_00238; phage(gi134288807) | 1e-06 | Click |
5 | 289563..291095 | PHAGE_Prochl_P_SSM2: 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase; PP_00239; phage(gi61806062) | 5e-61 | Click |
6 | 291106..292356 | phosphoribosylamine--glycine ligase [Clostridium difficile R20291] gi|260685596|ref|YP_003216729.1|; PP_00240 | 0.0 | Click |
7 | 292381..296187 | PHAGE_Microb_Min1: putative phosphoribosyl formylglycinamidine (FGAM) synthase II; PP_00241; phage(gi149882852) | 4e-36 | Click |
8 | 296393..297265 | PHAGE_Escher_phAPEC8: putative dTDP-4-dehydrorhamnose reductase; PP_00242; phage(gi448260370) | 1e-34 | Click |
9 | 297374..298255 | PHAGE_Escher_phAPEC8: putative glucose-1-phosphate thymidylyltransferase; PP_00243; phage(gi448260372) | 2e-97 | Click |
10 | 298292..298849 | PHAGE_Escher_phAPEC8: putative dTDP-4-dehydrorhamnose 3,5-epimerase; PP_00244; phage(gi448260371) | 3e-46 | Click |
11 | 298887..299870 | PHAGE_Escher_phAPEC8: putative dTDP-glucose 4,6-dehydratase; PP_00245; phage(gi448260373) | 2e-73 | Click |
12 | 299909..300577 | PHAGE_Pseudo_KPP12: putative lytic tail protein; PP_00246; phage(gi431811119) | 5e-17 | Click |
13 | 300586..301014 | hypothetical protein CDR20291_0228 [Clostridium difficile R20291] gi|260685603|ref|YP_003216736.1|; PP_00247 | 2e-73 | Click |
14 | 301038..301352 | flagellar motor switch protein [Clostridium difficile R20291] gi|260685604|ref|YP_003216737.1|; PP_00248 | 1e-50 | Click |
15 | 301504..301779 | PHAGE_Cafete_BV_PW1: putative RecQ-like ATP-dependent DNA helicase; PP_00249; phage(gi310831032) | 9e-05 | Click |
16 | 301784..302200 | flagellar biosynthesis protein [Clostridium difficile R20291] gi|260685606|ref|YP_003216739.1|; PP_00250 | 5e-71 | Click |
17 | 302218..303528 | PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; PP_00251; phage(gi9631364) | 4e-08 | Click |
Region 2, total : 8 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 465333..466688 | PHAGE_Acanth_moumouvirus: SAM-dependent methyltransferase; PP_00408; phage(gi441432344) | 3e-31 | Click |
2 | 466669..466680 | attL TTAAACTTATTA | N/A | Click |
3 | complement(466770..466916) | PHAGE_Strept_5093: integrase; PP_00409; phage(gi238801921) | 4e-05 | Click |
4 | 467012..467167 | transposase mutator type [Clostridium difficile R20291] gi|260688631|ref|YP_003219765.1|; PP_00410 | 7e-12 | Click |
5 | 467211..468245 | hypothetical protein CDR20291_0379 [Clostridium difficile R20291] gi|260685753|ref|YP_003216886.1|; PP_00411 | 0.0 | Click |
6 | 468332..468535 | PHAGE_Clostr_phiCD38_2: hypothetical protein; PP_00412; phage(gi333798122) | 1e-18 | Click |
7 | 468706..469866 | PHAGE_Bacill_36: low copy number virion structural protein; PP_00413; phage(gi156564190) | 9e-08 | Click |
8 | complement(470397..471002) | PROPHAGE_Ralsto_GMI1000: isrso11-transposase orfb protein; PP_00414; phage(gi17546155) | 4e-36 | Click |
9 | complement(471290..471961) | PROPHAGE_Ralsto_GMI1000: ISRSO11-transposase ORFA protein; PP_00415; phage(gi17546156) | 3e-07 | Click |
10 | 478959..478970 | attR TTAAACTTATTA | N/A | Click |
Region 3, total : 30 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1440158..1440358 | PHAGE_Lactoc_bIL312: Csp; PP_01274; phage(gi13095918) | 6e-17 | Click |
2 | 1440779..1441207 | regulatory protein [Clostridium difficile R20291] gi|260686563|ref|YP_003217696.1|; PP_01275 | 4e-77 | Click |
3 | complement(1441350..1442105) | peptidyl-prolyl isomerase [Clostridium difficile R20291] gi|260686564|ref|YP_003217697.1|; PP_01276 | 6e-137 | Click |
4 | complement(1442226..1442360) | hypothetical protein CDR20291_1200 [Clostridium difficile R20291] gi|260686565|ref|YP_003217698.1|; PP_01277 | 2e-16 | Click |
5 | complement(1442806..1443312) | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp43; PP_01278; phage(gi209901280) | 3e-10 | Click |
6 | complement(1443394..1443714) | PHAGE_Staphy_SpaA1: XRE family transcriptional regulator; PP_01279; phage(gi399498895) | 9e-13 | Click |
7 | 1443883..1444080 | PHAGE_Staphy_phiETA: hypothetical protein phiETA_10; PP_01280; phage(gi17426238) | 6e-06 | Click |
8 | 1444185..1444625 | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp73; PP_01281; phage(gi90592709) | 8e-38 | Click |
9 | 1444874..1445317 | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp13; PP_01282; phage(gi90592649) | 4e-24 | Click |
10 | 1445322..1446386 | PHAGE_Clostr_phiMMP04: tail sheath; PP_01283; phage(gi414090451) | 2e-69 | Click |
11 | 1446400..1446828 | PHAGE_Clostr_phiMMP04: XkdM-related protein; PP_01284; phage(gi414090452) | 8e-08 | Click |
12 | 1446942..1447388 | PHAGE_Clostr_CD119: XkdN protein; PP_01285; phage(gi90592652) | 4e-15 | Click |
13 | 1447466..1447582 | hypothetical protein CDR20291_1209 [Clostridium difficile R20291] gi|260686574|ref|YP_003217707.1|; PP_01286 | 1e-14 | Click |
14 | 1447582..1450035 | PHAGE_Clostr_phiMMP04: tail tape measure; PP_01287; phage(gi414090455) | 2e-22 | Click |
15 | 1450035..1450457 | PHAGE_Clostr_phiMMP04: peptidoglycan-binding lysin domain protein; PP_01288; phage(gi414090456) | 2e-47 | Click |
16 | 1450739..1452268 | PHAGE_Clostr_phiMMP04: cell wall hydrolase; PP_01289; phage(gi414090458) | 2e-121 | Click |
17 | 1452284..1452610 | PHAGE_Clostr_phiMMP04: hypothetical protein; PP_01290; phage(gi414090459) | 3e-55 | Click |
18 | 1452610..1453038 | PHAGE_Clostr_phiMMP04: XkdS-related protein; PP_01291; phage(gi414090460) | 1e-63 | Click |
19 | 1453031..1454083 | PHAGE_Clostr_phiMMP04: baseplate J-like assembly protein; PP_01292; phage(gi414090461) | 1e-140 | Click |
20 | 1454080..1454778 | PHAGE_Clostr_phiMMP04: hypothetical protein; PP_01293; phage(gi414090462) | 2e-52 | Click |
21 | 1454779..1455765 | PHAGE_Clostr_phiMMP04: tail fiber; PP_01294; phage(gi414090463) | 1e-49 | Click |
22 | 1455787..1460964 | PHAGE_Bathyc_BpV1: hypothetical protein; PP_01295; phage(gi313768166) | 3e-20 | Click |
23 | 1460981..1461334 | hypothetical protein CDR20291_1219 [Clostridium difficile R20291] gi|260686584|ref|YP_003217717.1|; PP_01296 | 2e-13 | Click |
24 | 1461597..1461857 | PHAGE_Clostr_phiCD38_2: putative holin; PP_01297; phage(gi333798129) | 4e-37 | Click |
25 | complement(1462082..1462537) | hypothetical protein CDR20291_1221 [Clostridium difficile R20291] gi|260686586|ref|YP_003217719.1|; PP_01298 | 1e-78 | Click |
26 | complement(1462765..1463184) | PHAGE_Strept_3: putative cI-like repressor; PP_01299; phage(gi28876313) | 6e-08 | Click |
27 | 1463483..1463692 | PHAGE_Bacill_BCJA1c: cro; PP_01300; phage(gi56694875) | 4e-08 | Click |
28 | 1463724..1463933 | hypothetical protein CDR20291_1224 [Clostridium difficile R20291] gi|260686589|ref|YP_003217722.1|; PP_01301 | 8e-33 | Click |
29 | complement(1464150..1464548) | PHAGE_Lister_A118: putative repressor protein; PP_01302; phage(gi16798819) | 1e-08 | Click |
30 | complement(1464969..1467461) | PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; PP_01303; phage(gi9631364) | 2e-12 | Click |
Region 4, total : 71 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1682995..1683014 | attL TATTACAACTTAAGTAAATA | N/A | Click |
2 | complement(1683199..1684329) | PHAGE_Clostr_phiC2: putative integrase; PP_01499; phage(gi134287379) | 3e-137 | Click |
3 | complement(1684408..1685115) | hypothetical protein CDR20291_1416 [Clostridium difficile R20291] gi|260686780|ref|YP_003217913.1|; PP_01500 | 1e-135 | Click |
4 | complement(1685128..1685997) | HipA-like protein [Clostridium difficile R20291] gi|260686781|ref|YP_003217914.1|; PP_01501 | 2e-168 | Click |
5 | complement(1686617..1687123) | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp43; PP_01502; phage(gi209901280) | 4e-09 | Click |
6 | complement(1687199..1687747) | PHAGE_Clostr_phiC2: putative repressor; PP_01503; phage(gi134287382) | 1e-19 | Click |
7 | complement(1687759..1688100) | PHAGE_Clostr_phiC2: putative repressor; PP_01504; phage(gi134287382) | 2e-11 | Click |
8 | 1688277..1688480 | PHAGE_Strept_Sfi21: cro-repressor; PP_01505; phage(gi9632966) | 4e-07 | Click |
9 | 1688528..1689337 | PHAGE_Staphy_88: ORF019; PP_01506; phage(gi66396351) | 2e-57 | Click |
10 | 1689384..1689593 | hypothetical; PP_01507 | N/A | Click |
11 | complement(1689603..1689977) | hypothetical protein Desmer_1153 [Desulfosporosinus meridiei DSM 13257] gi|402571698|ref|YP_006621041.1|; PP_01508 | 3e-14 | Click |
12 | 1690053..1690250 | PHAGE_Clostr_phiC2: putative repressor; PP_01509; phage(gi134287390) | 5e-19 | Click |
13 | 1690281..1690673 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p59; PP_01510; phage(gi134287391) | 7e-21 | Click |
14 | 1690660..1690803 | hypothetical; PP_01511 | N/A | Click |
15 | 1690874..1691311 | PHAGE_Entero_phiFL4A: hypothetical protein; PP_01512; phage(gi281416448) | 1e-08 | Click |
16 | 1691323..1692489 | PHAGE_Staphy_phi2958PVL: hypothetical protein phi2958PVL_gp17; PP_01513; phage(gi209363569) | 3e-100 | Click |
17 | 1692504..1692839 | hypothetical protein H04402_02629 [Clostridium botulinum H04402 065] gi|387818822|ref|YP_005679169.1|; PP_01514 | 5e-08 | Click |
18 | 1692892..1693464 | hypothetical protein CDR20291_1422 [Clostridium difficile R20291] gi|260686786|ref|YP_003217919.1|; PP_01515 | 3e-105 | Click |
19 | 1693487..1694059 | PHAGE_Bacill_PBC1: hypothetical protein; PP_01516; phage(gi389060352) | 2e-52 | Click |
20 | 1694059..1696017 | PHAGE_Bacill_PBC1: DNA polymerase; PP_01517; phage(gi389060355) | 0.0 | Click |
21 | 1696029..1698446 | PHAGE_Entero_phiFL4A: VirE domain protein; PP_01518; phage(gi281416460) | 0.0 | Click |
22 | 1698430..1698555 | hypothetical; PP_01519 | N/A | Click |
23 | 1698728..1699054 | PHAGE_Staphy_2638A: ORF037; PP_01520; phage(gi66395482) | 3e-15 | Click |
24 | 1699084..1700373 | PHAGE_Entero_phiFL4A: DNA helicase; PP_01521; phage(gi281416462) | 9e-148 | Click |
25 | 1700397..1700534 | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp67; PP_01522; phage(gi209901304) | 9e-05 | Click |
26 | 1700527..1701006 | PHAGE_Clostr_PhiS63: gp40; PP_01523; phage(gi388570666) | 1e-40 | Click |
27 | 1701289..1701741 | PHAGE_Clostr_phiMMP02: phage repressor; PP_01524; phage(gi414090441) | 2e-71 | Click |
28 | 1702033..1703007 | hypothetical protein CDR20291_1429 [Clostridium difficile R20291] gi|260686793|ref|YP_003217926.1|; PP_01525 | 0.0 | Click |
29 | 1703028..1703537 | hypothetical protein CDR20291_1430 [Clostridium difficile R20291] gi|260686794|ref|YP_003217927.1|; PP_01526 | 3e-89 | Click |
30 | 1703607..1704299 | PHAGE_Clostr_phiC2: putative terminase small subunit; PP_01527; phage(gi134287336) | 1e-126 | Click |
31 | 1704289..1705530 | PHAGE_Clostr_phiC2: putative terminase large subunit; PP_01528; phage(gi134287337) | 0.0 | Click |
32 | 1705536..1706978 | PHAGE_Clostr_phiC2: putative portal protein; PP_01529; phage(gi134287338) | 0.0 | Click |
33 | 1706968..1708503 | PHAGE_Clostr_phiC2: putative head morphogenesis protein; PP_01530; phage(gi134287339) | 0.0 | Click |
34 | 1708505..1708753 | hypothetical; PP_01531 | N/A | Click |
35 | 1708821..1709384 | PHAGE_Clostr_phiC2: putative scaffold protein; PP_01532; phage(gi134287341) | 4e-104 | Click |
36 | 1709396..1710286 | PHAGE_Clostr_phiC2: putative main capsid protein; PP_01533; phage(gi134287342) | 5e-168 | Click |
37 | 1710305..1710538 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p08; PP_01534; phage(gi134287343) | 1e-34 | Click |
38 | 1710548..1710949 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p09; PP_01535; phage(gi134287344) | 2e-69 | Click |
39 | 1710943..1711290 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p10; PP_01536; phage(gi134287345) | 3e-59 | Click |
40 | 1711290..1711580 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p11; PP_01537; phage(gi134287346) | 1e-46 | Click |
41 | 1711690..1712496 | PHAGE_Clostr_phiCP26F: hypothetical protein; PP_01538; phage(gi422933952) | 2e-50 | Click |
42 | 1712845..1713282 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p12; PP_01539; phage(gi134287347) | 8e-78 | Click |
43 | 1713275..1713451 | hypothetical protein Sterm_1436 [Sebaldella termitidis ATCC 33386] gi|269120052|ref|YP_003308229.1|; PP_01540 | 3e-06 | Click |
44 | 1713452..1714762 | PHAGE_Clostr_phiC2: putative sheath tail protein; PP_01541; phage(gi134287348) | 0.0 | Click |
45 | 1714779..1715249 | PHAGE_Clostr_phiC2: putative core tail; PP_01542; phage(gi134287349) | 5e-73 | Click |
46 | 1715308..1716135 | PHAGE_Clostr_phiCP26F: hypothetical protein; PP_01543; phage(gi422933952) | 5e-42 | Click |
47 | 1716207..1716647 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p16; PP_01544; phage(gi134287351) | 2e-49 | Click |
48 | 1716722..1716841 | hypothetical; PP_01545 | N/A | Click |
49 | 1718486..1718674 | hypothetical; PP_01546 | N/A | Click |
50 | 1718793..1719659 | PHAGE_Lactob_Lj965: putative antirepressor; PP_01547; phage(gi41179234) | 1e-07 | Click |
51 | 1719712..1719846 | hypothetical; PP_01548 | N/A | Click |
52 | 1720524..1721051 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p18; PP_01549; phage(gi134287353) | 4e-93 | Click |
53 | 1721189..1721956 | PHAGE_Thermo_THSA_485A: hypothetical protein; PP_01550; phage(gi397912628) | 4e-35 | Click |
54 | 1722022..1724394 | PHAGE_Clostr_phiC2: putative tail tape measure protein; PP_01551; phage(gi134287355) | 2e-166 | Click |
55 | 1724411..1725100 | PHAGE_Clostr_phiC2: putative LysM; PP_01552; phage(gi134287356) | 1e-109 | Click |
56 | 1725093..1726985 | PHAGE_Clostr_phiC2: putative hydrolase; PP_01553; phage(gi134287357) | 0.0 | Click |
57 | 1726999..1727259 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p23; PP_01554; phage(gi134287358) | 1e-35 | Click |
58 | 1727264..1727683 | PHAGE_Strept_1: hypothetical protein EJ-1p60; PP_01555; phage(gi39653734) | 6e-21 | Click |
59 | 1727684..1728733 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p25; PP_01556; phage(gi134287359) | 0.0 | Click |
60 | 1728726..1729343 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p26; PP_01557; phage(gi134287360) | 1e-114 | Click |
61 | 1729355..1730380 | PHAGE_Clostr_phiC2: putative tail fiber protein; PP_01558; phage(gi134287361) | 2e-166 | Click |
62 | 1730397..1731923 | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp26; PP_01559; phage(gi209901263) | 1e-94 | Click |
63 | 1731938..1732231 | PHAGE_Clostr_phiCD6356: hypothetical protein; PP_01560; phage(gi326536870) | 2e-40 | Click |
64 | 1732231..1732413 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p34; PP_01561; phage(gi134287367) | 3e-26 | Click |
65 | 1732447..1733013 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p30; PP_01562; phage(gi134287363) | 5e-12 | Click |
66 | 1733044..1733334 | PHAGE_Staphy_SpaA1: hypothetical secreted or membrane protein; PP_01563; phage(gi399498883) | 3e-08 | Click |
67 | 1733338..1733595 | PHAGE_Clostr_phiC2: holin; PP_01564; phage(gi134287369) | 1e-43 | Click |
68 | 1733856..1734626 | PHAGE_Clostr_phiC2: putative abortive infection bacteriophage resistance protein ORF 37; PP_01565; phage(gi134287370) | 5e-147 | Click |
69 | 1734797..1735609 | PHAGE_Clostr_phiC2: putative amidase/endolysin; PP_01566; phage(gi134287371) | 2e-143 | Click |
70 | 1735703..1738102 | PHAGE_Amsact_: Possible surface protein; PP_01567; phage(gi9964577) | 1e-22 | Click |
71 | complement(1738143..1738328) | PHAGE_Clostr_phiCD6356: hypothetical protein; PP_01568; phage(gi326536880) | 1e-10 | Click |
72 | complement(1738557..1738685) | PHAGE_Clostr_phiMMP04: hypothetical protein; PP_01569; phage(gi414090472) | 2e-10 | Click |
73 | 1738969..1738988 | attR TATTACAACTTAAGTAAATA | N/A | Click |