| Definition | Clostridium difficile M68, complete genome. |
|---|---|
| Accession | FN668375 |
| Length | 4,308,325 |
Legend
| Hits against Virus and prophage DB | |
| Hits against Bacterial DB or GenBank file |
Region 1, total : 29 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1443756..1443956 | PHAGE_Lactoc_bIL312: Csp; PP_01302; phage(gi13095918) | 6e-17 | Click |
| 2 | 1444377..1444805 | regulatory protein [Clostridium difficile R20291] gi|260686563|ref|YP_003217696.1|; PP_01303 | 4e-77 | Click |
| 3 | complement(1444948..1445703) | peptidyl-prolyl isomerase [Clostridium difficile R20291] gi|260686564|ref|YP_003217697.1|; PP_01304 | 2e-136 | Click |
| 4 | complement(1446404..1446910) | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp43; PP_01305; phage(gi209901280) | 3e-10 | Click |
| 5 | complement(1446992..1447312) | PHAGE_Staphy_SpaA1: XRE family transcriptional regulator; PP_01306; phage(gi399498895) | 9e-13 | Click |
| 6 | 1447480..1447677 | PHAGE_Staphy_phiETA: hypothetical protein phiETA_10; PP_01307; phage(gi17426238) | 6e-06 | Click |
| 7 | 1447782..1448222 | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp73; PP_01308; phage(gi90592709) | 8e-38 | Click |
| 8 | 1448471..1448914 | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp13; PP_01309; phage(gi90592649) | 3e-23 | Click |
| 9 | 1448919..1449983 | PHAGE_Clostr_phiMMP04: tail sheath; PP_01310; phage(gi414090451) | 8e-69 | Click |
| 10 | 1449997..1450425 | PHAGE_Clostr_phiMMP04: XkdM-related protein; PP_01311; phage(gi414090452) | 8e-08 | Click |
| 11 | 1450539..1450985 | PHAGE_Clostr_CD119: XkdN protein; PP_01312; phage(gi90592652) | 5e-15 | Click |
| 12 | 1451012..1451179 | hypothetical protein CDR20291_1209 [Clostridium difficile R20291] gi|260686574|ref|YP_003217707.1|; PP_01313 | 9e-26 | Click |
| 13 | 1451179..1453578 | PHAGE_Clostr_phiMMP04: tail tape measure; PP_01314; phage(gi414090455) | 6e-23 | Click |
| 14 | 1453578..1454000 | PHAGE_Clostr_phiMMP04: peptidoglycan-binding lysin domain protein; PP_01315; phage(gi414090456) | 7e-47 | Click |
| 15 | 1454282..1455814 | PHAGE_Clostr_phiMMP04: cell wall hydrolase; PP_01316; phage(gi414090458) | 1e-122 | Click |
| 16 | 1455830..1456156 | PHAGE_Clostr_phiMMP04: hypothetical protein; PP_01317; phage(gi414090459) | 6e-55 | Click |
| 17 | 1456156..1456584 | PHAGE_Clostr_phiMMP04: XkdS-related protein; PP_01318; phage(gi414090460) | 1e-63 | Click |
| 18 | 1456577..1457629 | PHAGE_Clostr_phiMMP04: baseplate J-like assembly protein; PP_01319; phage(gi414090461) | 3e-138 | Click |
| 19 | 1457626..1458324 | PHAGE_Clostr_phiMMP04: hypothetical protein; PP_01320; phage(gi414090462) | 3e-52 | Click |
| 20 | 1458325..1459311 | PHAGE_Clostr_phiMMP04: tail fiber; PP_01321; phage(gi414090463) | 3e-48 | Click |
| 21 | 1459333..1464564 | PHAGE_Bathyc_BpV1: hypothetical protein; PP_01322; phage(gi313768166) | 7e-19 | Click |
| 22 | 1464581..1464934 | hypothetical protein CDR20291_1219 [Clostridium difficile R20291] gi|260686584|ref|YP_003217717.1|; PP_01323 | 5e-13 | Click |
| 23 | 1465197..1465457 | PHAGE_Clostr_phiCD38_2: putative holin; PP_01324; phage(gi333798129) | 4e-37 | Click |
| 24 | complement(1465681..1466136) | hypothetical protein CDR20291_1221 [Clostridium difficile R20291] gi|260686586|ref|YP_003217719.1|; PP_01325 | 1e-78 | Click |
| 25 | complement(1466364..1466783) | PHAGE_Strept_3: putative cI-like repressor; PP_01326; phage(gi28876313) | 6e-08 | Click |
| 26 | 1467082..1467291 | PHAGE_Bacill_BCJA1c: cro; PP_01327; phage(gi56694875) | 4e-08 | Click |
| 27 | 1467323..1467532 | hypothetical protein CDR20291_1224 [Clostridium difficile R20291] gi|260686589|ref|YP_003217722.1|; PP_01328 | 8e-33 | Click |
| 28 | complement(1467749..1468147) | PHAGE_Lister_A118: putative repressor protein; PP_01329; phage(gi16798819) | 1e-08 | Click |
| 29 | complement(1468568..1471060) | PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; PP_01330; phage(gi9631364) | 2e-11 | Click |
Region 2, total : 73 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1684921..1686609 | PHAGE_Ostreo_2: putative acetolactate synthase large subunit; PP_01526; phage(gi314055125) | 3e-60 | Click |
| 2 | 1686755..1686782 | attL TAGAATAATATTACAACTTAAGTAAATA | N/A | Click |
| 3 | complement(1686967..1688097) | PHAGE_Clostr_phiC2: putative integrase; PP_01527; phage(gi134287379) | 3e-137 | Click |
| 4 | complement(1688337..1688843) | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp43; PP_01528; phage(gi209901280) | 4e-09 | Click |
| 5 | complement(1689106..1690695) | PHAGE_Bacill_phBC6A51: hypothetical protein BC1912; PP_01529; phage(gi31415804) | 6e-74 | Click |
| 6 | complement(1690719..1691264) | PHAGE_Clostr_phiC2: putative repressor; PP_01530; phage(gi134287382) | 3e-24 | Click |
| 7 | 1691445..1691660 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p51; PP_01531; phage(gi134287383) | 9e-16 | Click |
| 8 | 1691691..1692464 | PHAGE_Clostr_phiC2: putative antirepressor; PP_01532; phage(gi134287384) | 4e-43 | Click |
| 9 | 1692584..1693414 | PHAGE_Staphy_PH15: putative antirepressor; PP_01533; phage(gi119967871) | 2e-51 | Click |
| 10 | 1693461..1693670 | hypothetical; PP_01534 | N/A | Click |
| 11 | complement(1693680..1694054) | hypothetical protein Desmer_1153 [Desulfosporosinus meridiei DSM 13257] gi|402571698|ref|YP_006621041.1|; PP_01535 | 3e-14 | Click |
| 12 | 1694130..1694327 | PHAGE_Clostr_phiC2: putative repressor; PP_01536; phage(gi134287390) | 3e-19 | Click |
| 13 | 1694358..1694750 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p59; PP_01537; phage(gi134287391) | 7e-21 | Click |
| 14 | 1694737..1694880 | hypothetical; PP_01538 | N/A | Click |
| 15 | 1694951..1695388 | PHAGE_Entero_phiFL4A: hypothetical protein; PP_01539; phage(gi281416448) | 1e-08 | Click |
| 16 | 1695400..1696566 | PHAGE_Staphy_phi2958PVL: hypothetical protein phi2958PVL_gp17; PP_01540; phage(gi209363569) | 2e-100 | Click |
| 17 | 1696581..1696916 | hypothetical protein H04402_02629 [Clostridium botulinum H04402 065] gi|387818822|ref|YP_005679169.1|; PP_01541 | 6e-08 | Click |
| 18 | 1696969..1697541 | hypothetical protein CDR20291_1422 [Clostridium difficile R20291] gi|260686786|ref|YP_003217919.1|; PP_01542 | 3e-105 | Click |
| 19 | 1697564..1698136 | PHAGE_Bacill_PBC1: hypothetical protein; PP_01543; phage(gi389060352) | 2e-52 | Click |
| 20 | 1698136..1700094 | PHAGE_Bacill_PBC1: DNA polymerase; PP_01544; phage(gi389060355) | 0.0 | Click |
| 21 | 1700106..1702523 | PHAGE_Entero_phiFL4A: VirE domain protein; PP_01545; phage(gi281416460) | 0.0 | Click |
| 22 | 1702507..1702632 | hypothetical; PP_01546 | N/A | Click |
| 23 | 1702805..1703131 | PHAGE_Staphy_2638A: ORF037; PP_01547; phage(gi66395482) | 3e-15 | Click |
| 24 | 1703161..1704450 | PHAGE_Entero_phiFL4A: DNA helicase; PP_01548; phage(gi281416462) | 1e-148 | Click |
| 25 | 1704474..1704611 | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp67; PP_01549; phage(gi209901304) | 9e-05 | Click |
| 26 | 1704604..1705083 | PHAGE_Clostr_PhiS63: gp40; PP_01550; phage(gi388570666) | 1e-40 | Click |
| 27 | 1705568..1705804 | PHAGE_Clostr_phiMMP02: phage repressor; PP_01551; phage(gi414090441) | 1e-39 | Click |
| 28 | 1706107..1707081 | hypothetical protein CDR20291_1429 [Clostridium difficile R20291] gi|260686793|ref|YP_003217926.1|; PP_01552 | 0.0 | Click |
| 29 | 1707102..1707611 | hypothetical protein CDR20291_1430 [Clostridium difficile R20291] gi|260686794|ref|YP_003217927.1|; PP_01553 | 3e-89 | Click |
| 30 | 1707682..1708374 | PHAGE_Clostr_phiC2: putative terminase small subunit; PP_01554; phage(gi134287336) | 1e-128 | Click |
| 31 | 1708364..1709605 | PHAGE_Clostr_phiC2: putative terminase large subunit; PP_01555; phage(gi134287337) | 0.0 | Click |
| 32 | 1709611..1711050 | PHAGE_Clostr_phiC2: putative portal protein; PP_01556; phage(gi134287338) | 0.0 | Click |
| 33 | 1711040..1712533 | PHAGE_Clostr_phiC2: putative head morphogenesis protein; PP_01557; phage(gi134287339) | 0.0 | Click |
| 34 | 1712499..1712741 | hypothetical; PP_01558 | N/A | Click |
| 35 | 1713051..1713614 | PHAGE_Clostr_phiC2: putative scaffold protein; PP_01559; phage(gi134287341) | 5e-104 | Click |
| 36 | 1713626..1714525 | PHAGE_Clostr_phiC2: putative main capsid protein; PP_01560; phage(gi134287342) | 2e-172 | Click |
| 37 | 1714525..1714758 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p08; PP_01561; phage(gi134287343) | 8e-36 | Click |
| 38 | 1714768..1715169 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p09; PP_01562; phage(gi134287344) | 2e-69 | Click |
| 39 | 1715163..1715510 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p10; PP_01563; phage(gi134287345) | 3e-59 | Click |
| 40 | 1715510..1715935 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p11; PP_01564; phage(gi134287346) | 1e-76 | Click |
| 41 | 1715928..1716365 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p12; PP_01565; phage(gi134287347) | 6e-73 | Click |
| 42 | 1716358..1716534 | hypothetical protein Cphy_2959 [Clostridium phytofermentans ISDg] gi|160881087|ref|YP_001560055.1|; PP_01566 | 7e-07 | Click |
| 43 | 1716535..1717845 | PHAGE_Clostr_phiC2: putative sheath tail protein; PP_01567; phage(gi134287348) | 0.0 | Click |
| 44 | 1717862..1718332 | PHAGE_Clostr_phiC2: putative core tail; PP_01568; phage(gi134287349) | 4e-74 | Click |
| 45 | 1718404..1718844 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p16; PP_01569; phage(gi134287351) | 2e-49 | Click |
| 46 | 1718919..1719038 | hypothetical; PP_01570 | N/A | Click |
| 47 | 1720063..1720224 | hypothetical; PP_01571 | N/A | Click |
| 48 | 1720494..1721246 | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp18; PP_01572; phage(gi90592654) | 1e-64 | Click |
| 49 | 1721550..1721723 | hypothetical protein spyM18_1272 [Streptococcus pyogenes MGAS8232] gi|19746243|ref|NP_607379.1|; PP_01573 | 3e-08 | Click |
| 50 | 1721847..1722674 | PHAGE_Lactob_H: hypothetical protein; PP_01574; phage(gi148750866) | 5e-17 | Click |
| 51 | 1722723..1722899 | hypothetical; PP_01575 | N/A | Click |
| 52 | 1723056..1723184 | hypothetical; PP_01576 | N/A | Click |
| 53 | 1723330..1723890 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p19; PP_01577; phage(gi134287354) | 2e-99 | Click |
| 54 | 1723966..1726332 | PHAGE_Clostr_phiC2: putative tail tape measure protein; PP_01578; phage(gi134287355) | 0.0 | Click |
| 55 | 1726348..1727049 | PHAGE_Clostr_phiC2: putative LysM; PP_01579; phage(gi134287356) | 5e-124 | Click |
| 56 | 1727042..1729006 | PHAGE_Clostr_phiC2: putative hydrolase; PP_01580; phage(gi134287357) | 0.0 | Click |
| 57 | 1729020..1729280 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p23; PP_01581; phage(gi134287358) | 7e-40 | Click |
| 58 | 1729285..1729704 | PHAGE_Strept_1: hypothetical protein EJ-1p60; PP_01582; phage(gi39653734) | 4e-21 | Click |
| 59 | 1729705..1730751 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p25; PP_01583; phage(gi134287359) | 0.0 | Click |
| 60 | 1730744..1731361 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p26; PP_01584; phage(gi134287360) | 1e-114 | Click |
| 61 | 1731373..1732365 | PHAGE_Clostr_phiC2: putative tail fiber protein; PP_01585; phage(gi134287361) | 1e-176 | Click |
| 62 | 1732382..1734094 | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp26; PP_01586; phage(gi209901263) | 0.0 | Click |
| 63 | 1734115..1734462 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p29; PP_01587; phage(gi134287362) | 4e-61 | Click |
| 64 | 1734474..1734644 | hypothetical; PP_01588 | N/A | Click |
| 65 | 1734675..1735241 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p30; PP_01589; phage(gi134287363) | 5e-12 | Click |
| 66 | 1735272..1735562 | PHAGE_Staphy_SpaA1: hypothetical secreted or membrane protein; PP_01590; phage(gi399498883) | 4e-08 | Click |
| 67 | 1735566..1735823 | PHAGE_Clostr_phiC2: holin; PP_01591; phage(gi134287369) | 1e-40 | Click |
| 68 | 1736449..1736946 | PHAGE_Clostr_phiC2: putative abortive infection bacteriophage resistance protein ORF 37; PP_01592; phage(gi134287370) | 3e-94 | Click |
| 69 | 1737025..1737837 | PHAGE_Clostr_phiC2: putative amidase/endolysin; PP_01593; phage(gi134287371) | 2e-143 | Click |
| 70 | 1737994..1740285 | PHAGE_Amsact_: similar to internalin A precursor; PP_01594; phage(gi9964606) | 2e-31 | Click |
| 71 | complement(1740327..1740512) | PHAGE_Clostr_phiCD6356: hypothetical protein; PP_01595; phage(gi326536880) | 1e-10 | Click |
| 72 | complement(1740509..1740664) | hypothetical; PP_01596 | N/A | Click |
| 73 | complement(1740741..1740869) | PHAGE_Clostr_phiMMP04: hypothetical protein; PP_01597; phage(gi414090472) | 2e-10 | Click |
| 74 | complement(1741030..1741206) | PHAGE_Clostr_phiCD6356: hypothetical protein; PP_01598; phage(gi326536880) | 1e-06 | Click |
| 75 | 1741861..1741888 | attR TAGAATAATATTACAACTTAAGTAAATA | N/A | Click |
Region 3, total : 20 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 2523405..2523417 | attL ATTTTACAATTTT | N/A | Click |
| 2 | complement(2524474..2525220) | PHAGE_Clostr_phiC2: putative amidase/endolysin; PP_02325; phage(gi134287371) | 4e-28 | Click |
| 3 | complement(2525220..2525477) | PHAGE_Clostr_phiC2: holin; PP_02326; phage(gi134287369) | 3e-34 | Click |
| 4 | complement(2525497..2525727) | PHAGE_Clostr_phiC2: hypothetical protein phiC2p35; PP_02327; phage(gi134287368) | 2e-33 | Click |
| 5 | complement(2525785..2527332) | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp26; PP_02328; phage(gi209901263) | 0.0 | Click |
| 6 | complement(2527467..2527649) | PHAGE_Clostr_phiC2: hypothetical protein phiC2p34; PP_02329; phage(gi134287367) | 5e-22 | Click |
| 7 | complement(2527729..2527941) | PHAGE_Clostr_phiC2: hypothetical protein phiC2p29; PP_02330; phage(gi134287362) | 1e-24 | Click |
| 8 | complement(2527955..2529448) | PHAGE_Clostr_phiMMP04: hypothetical protein; PP_02331; phage(gi414090464) | 7e-115 | Click |
| 9 | complement(2529464..2529811) | PHAGE_Clostr_phiC2: putative tail fiber protein; PP_02332; phage(gi134287361) | 6e-12 | Click |
| 10 | complement(2529799..2531223) | PHAGE_Clostr_phiC2: hypothetical protein phiC2p25; PP_02333; phage(gi134287359) | 6e-158 | Click |
| 11 | 2531458..2531892 | hypothetical; PP_02334 | N/A | Click |
| 12 | complement(2531980..2533539) | PHAGE_Bacill_36: low copy number virion structural protein; PP_02335; phage(gi156564190) | 3e-07 | Click |
| 13 | 2533744..2534184 | PHAGE_Clostr_phiC2: putative integrase; PP_02336; phage(gi134287379) | 1e-49 | Click |
| 14 | 2534226..2534885 | PHAGE_Clostr_phiC2: putative integrase; PP_02337; phage(gi134287379) | 9e-56 | Click |
| 15 | complement(2535522..2535698) | PHAGE_Clostr_phiC2: putative transcriptional regulator; PP_02338; phage(gi134287378) | 5e-12 | Click |
| 16 | complement(2535853..2536230) | PHAGE_Clostr_phiC2: putative transcriptional regulator; PP_02339; phage(gi134287377) | 9e-50 | Click |
| 17 | complement(2536790..2536978) | hypothetical protein CDR20291_2193 [Clostridium difficile R20291] gi|260687544|ref|YP_003218678.1|; PP_02340 | 2e-24 | Click |
| 18 | 2537139..2537489 | hypothetical protein CDR20291_2194 [Clostridium difficile R20291] gi|260687545|ref|YP_003218679.1|; PP_02341 | 1e-56 | Click |
| 19 | 2537491..2537691 | PHAGE_Lactoc_phiLC3: phage repressor; PP_02342; phage(gi45597387) | 2e-05 | Click |
| 20 | 2538014..2538190 | hypothetical protein CDR20291_1271 [Clostridium difficile R20291] gi|260686636|ref|YP_003217769.1|; PP_02343 | 5e-25 | Click |
| 21 | 2538414..2538614 | PHAGE_Lactoc_bIL312: Csp; PP_02344; phage(gi13095918) | 7e-21 | Click |
| 22 | 2551249..2551261 | attR ATTTTACAATTTT | N/A | Click |
Region 4, total : 47 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 3542647..3542659 | attL TATTAAATTAGTT | N/A | Click |
| 2 | 3542727..3542739 | attL TAATAAATATAAT | N/A | Click |
| 3 | complement(3543380..3544192) | PHAGE_Clostr_phiMMP04: endolysin; PP_03211; phage(gi414090468) | 2e-129 | Click |
| 4 | complement(3544192..3544449) | PHAGE_Clostr_CD119: putative holin; PP_03212; phage(gi90592670) | 8e-41 | Click |
| 5 | complement(3544469..3544699) | PHAGE_Clostr_phiMMP02: hypothetical protein; PP_03213; phage(gi414090397) | 3e-37 | Click |
| 6 | complement(3544770..3545303) | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp29; PP_03214; phage(gi209901266) | 8e-19 | Click |
| 7 | complement(3545337..3545519) | PHAGE_Clostr_phiMMP04: hypothetical protein; PP_03215; phage(gi414090466) | 9e-24 | Click |
| 8 | complement(3545519..3545812) | PHAGE_Clostr_phiMMP04: hypothetical protein; PP_03216; phage(gi414090465) | 1e-46 | Click |
| 9 | complement(3545826..3547523) | PHAGE_Clostr_phiMMP04: hypothetical protein; PP_03217; phage(gi414090464) | 1e-74 | Click |
| 10 | complement(3547540..3548541) | PHAGE_Clostr_phiMMP04: tail fiber; PP_03218; phage(gi414090463) | 2e-70 | Click |
| 11 | complement(3548543..3549160) | PHAGE_Clostr_phiMMP04: hypothetical protein; PP_03219; phage(gi414090462) | 2e-104 | Click |
| 12 | complement(3549157..3550212) | PHAGE_Clostr_phiMMP04: baseplate J-like assembly protein; PP_03220; phage(gi414090461) | 0.0 | Click |
| 13 | complement(3550205..3550633) | PHAGE_Clostr_phiMMP04: XkdS-related protein; PP_03221; phage(gi414090460) | 5e-75 | Click |
| 14 | complement(3550633..3550959) | PHAGE_Clostr_phiMMP04: hypothetical protein; PP_03222; phage(gi414090459) | 5e-51 | Click |
| 15 | complement(3550975..3552492) | PHAGE_Clostr_phiMMP04: cell wall hydrolase; PP_03223; phage(gi414090458) | 0.0 | Click |
| 16 | complement(3552732..3553367) | PHAGE_Clostr_phiMMP04: peptidoglycan-binding lysin domain protein; PP_03224; phage(gi414090456) | 3e-119 | Click |
| 17 | complement(3553367..3555121) | PHAGE_Clostr_phiMMP04: tail tape measure; PP_03225; phage(gi414090455) | 0.0 | Click |
| 18 | complement(3555114..3555287) | PHAGE_Clostr_phiMMP04: hypothetical protein; PP_03226; phage(gi414090454) | 1e-26 | Click |
| 19 | complement(3555305..3555688) | PHAGE_Clostr_phiMMP04: XkdN-related protein; PP_03227; phage(gi414090453) | 2e-64 | Click |
| 20 | complement(3555737..3556186) | PHAGE_Clostr_phiMMP04: XkdM-related protein; PP_03228; phage(gi414090452) | 1e-36 | Click |
| 21 | complement(3556199..3557266) | PHAGE_Clostr_phiMMP04: tail sheath; PP_03229; phage(gi414090451) | 0.0 | Click |
| 22 | complement(3557281..3557697) | PHAGE_Clostr_phiMMP04: hypothetical protein; PP_03230; phage(gi414090450) | 2e-68 | Click |
| 23 | complement(3557709..3558122) | PHAGE_Clostr_phiMMP04: hypothetical protein; PP_03231; phage(gi414090449) | 2e-73 | Click |
| 24 | complement(3558115..3558453) | PHAGE_Clostr_phiMMP04: head-tail adaptor; PP_03232; phage(gi414090448) | 3e-60 | Click |
| 25 | complement(3558455..3558742) | PHAGE_Clostr_phiMMP04: head-tail connector; PP_03233; phage(gi414090447) | 2e-45 | Click |
| 26 | complement(3558752..3560020) | PHAGE_Clostr_phiMMP04: major capsid protein; PP_03234; phage(gi414090446) | 0.0 | Click |
| 27 | complement(3560013..3560750) | PHAGE_Clostr_phiMMP04: ATP-dependent Clp protease; PP_03235; phage(gi414090445) | 1e-125 | Click |
| 28 | complement(3560756..3561910) | PHAGE_Clostr_phiMMP04: phage portal protein; PP_03236; phage(gi414090444) | 0.0 | Click |
| 29 | complement(3561926..3563575) | PHAGE_Clostr_phiMMP04: terminase; PP_03237; phage(gi414090443) | 0.0 | Click |
| 30 | complement(3563572..3563961) | PHAGE_Clostr_phiMMP04: hypothetical protein; PP_03238; phage(gi414090493) | 4e-41 | Click |
| 31 | complement(3564059..3564352) | PHAGE_Clostr_phiMMP04: HNH endonuclease; PP_03239; phage(gi414090491) | 1e-49 | Click |
| 32 | complement(3564345..3564638) | PHAGE_Clostr_phiMMP04: hypothetical protein; PP_03240; phage(gi414090490) | 1e-16 | Click |
| 33 | complement(3564835..3565434) | PHAGE_Clostr_phiMMP04: integrase; PP_03241; phage(gi414090489) | 7e-81 | Click |
| 34 | complement(3565721..3566548) | hypothetical protein Bcell_4298 [Bacillus cellulosilyticus DSM 2522] gi|317130974|ref|YP_004097256.1|; PP_03242 | 2e-28 | Click |
| 35 | complement(3566920..3567363) | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp73; PP_03243; phage(gi90592709) | 4e-24 | Click |
| 36 | complement(3567384..3567506) | hypothetical; PP_03244 | N/A | Click |
| 37 | complement(3567618..3567911) | hypothetical; PP_03245 | N/A | Click |
| 38 | complement(3567925..3568182) | hypothetical; PP_03246 | N/A | Click |
| 39 | complement(3568172..3568801) | sigma-70 family RNA polymerase sigma factor [Desulfosporosinus meridiei DSM 13257] gi|402572989|ref|YP_006622332.1|; PP_03247 | 3e-15 | Click |
| 40 | complement(3568816..3570150) | PHAGE_Marino_P12026: replicative DNA helicase; PP_03248; phage(gi399528354) | 6e-40 | Click |
| 41 | complement(3570165..3570929) | PHAGE_Lactob_Lrm1: DNA replication protein; PP_03249; phage(gi195661236) | 5e-30 | Click |
| 42 | complement(3570953..3571183) | hypothetical protein CLJU_c00250 [Clostridium ljungdahlii DSM 13528] gi|300853250|ref|YP_003778234.1|; PP_03250 | 2e-09 | Click |
| 43 | complement(3571195..3571632) | putative prophage LambdaCh01, transcriptional regulator [Clostridium botulinum E3 str. Alaska E43] gi|188588074|ref|YP_001921519.1|; PP_03251 | 1e-35 | Click |
| 44 | complement(3571660..3571878) | PHAGE_Lactob_c5: putative Cro-like repressor; PP_03252; phage(gi418488172) | 1e-05 | Click |
| 45 | 3572043..3572390 | PHAGE_Clostr_CD119: RepR; putative repressor; PP_03253; phage(gi90592681) | 4e-14 | Click |
| 46 | complement(3572437..3573597) | PHAGE_Parame_FR483: hypothetical protein FR483_N373L; PP_03254; phage(gi155370471) | 1e-05 | Click |
| 47 | complement(3574065..3574184) | hypothetical; PP_03255 | N/A | Click |
| 48 | 3574351..3574572 | PHAGE_Clostr_phiCD6356: helix-turn-helix domain protein; PP_03256; phage(gi326536884) | 6e-12 | Click |
| 49 | 3574583..3574595 | attR TAATAAATATAAT | N/A | Click |
| 50 | 3574620..3575798 | PHAGE_Rhodoc_REQ2: phage integrase; PP_03257; phage(gi372449859) | 4e-32 | Click |
| 51 | 3580609..3580621 | attR TATTAAATTAGTT | N/A | Click |
Region 5, total : 70 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 4244938..4244949 | attL AAGAGAAAGAAA | N/A | Click |
| 2 | 4254725..4256002 | PHAGE_Staphy_SpaA1: phage portal protein, SPP1; PP_03913; phage(gi399498867) | 2e-34 | Click |
| 3 | 4255980..4256741 | PHAGE_Clostr_CD119: putative head protein; PP_03914; phage(gi90592642) | 5e-17 | Click |
| 4 | 4256801..4257127 | hypothetical protein [Clostridium difficile BI1] gi|384358975|ref|YP_006196830.1|; PP_03915 | 9e-55 | Click |
| 5 | 4257153..4257755 | PHAGE_Staphy_96: ORF019; PP_03916; phage(gi66395904) | 3e-16 | Click |
| 6 | 4257784..4258707 | PHAGE_Clostr_CD119: putative capsid protein; PP_03917; phage(gi90592716) | 2e-70 | Click |
| 7 | 4258721..4258993 | hypothetical protein [Clostridium difficile BI1] gi|384358978|ref|YP_006196833.1|; PP_03918 | 1e-42 | Click |
| 8 | 4258986..4259357 | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp10; PP_03919; phage(gi90592646) | 1e-12 | Click |
| 9 | 4259369..4259716 | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp11; PP_03920; phage(gi90592647) | 1e-18 | Click |
| 10 | 4259716..4260072 | PHAGE_Strept_1: hypothetical protein EJ-1p50; PP_03921; phage(gi39653724) | 1e-08 | Click |
| 11 | 4260081..4260530 | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp13; PP_03922; phage(gi90592649) | 3e-27 | Click |
| 12 | 4260531..4261586 | PHAGE_Clostr_CD119: XkdK protein; PP_03923; phage(gi90592650) | 3e-83 | Click |
| 13 | 4261602..4262042 | PHAGE_Clostr_CD119: XkdM protein; PP_03924; phage(gi90592651) | 2e-33 | Click |
| 14 | 4262058..4262474 | PHAGE_Clostr_CD119: XkdN protein; PP_03925; phage(gi90592652) | 3e-30 | Click |
| 15 | 4262501..4262650 | hypothetical; PP_03926 | N/A | Click |
| 16 | 4262654..4266046 | PHAGE_Clostr_phiCD27: putative phage tail tape measure protein; PP_03927; phage(gi209901253) | 2e-100 | Click |
| 17 | 4266093..4266569 | hypothetical protein [Clostridium difficile BI1] gi|384358987|ref|YP_006196842.1|; PP_03928 | 2e-84 | Click |
| 18 | 4266627..4267262 | PHAGE_Clostr_CD119: XkdP protein; PP_03929; phage(gi90592656) | 3e-53 | Click |
| 19 | 4267343..4269019 | PHAGE_Clostr_CD119: XkdQ protein; PP_03930; phage(gi90592659) | 2e-106 | Click |
| 20 | 4269033..4269365 | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp25; PP_03931; phage(gi90592661) | 5e-51 | Click |
| 21 | 4269382..4269792 | PHAGE_Clostr_CD119: XkdS protein; PP_03932; phage(gi90592662) | 1e-43 | Click |
| 22 | 4269785..4270837 | PHAGE_Clostr_CD119: XkdT protein; PP_03933; phage(gi90592663) | 3e-137 | Click |
| 23 | 4270839..4271456 | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp28; PP_03934; phage(gi90592664) | 4e-79 | Click |
| 24 | 4271457..4272458 | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp29; PP_03935; phage(gi90592665) | 4e-46 | Click |
| 25 | 4272473..4274098 | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp31; PP_03936; phage(gi90592667) | 9e-140 | Click |
| 26 | 4274116..4274409 | PHAGE_Clostr_phiMMP02: hypothetical protein; PP_03937; phage(gi414090392) | 3e-37 | Click |
| 27 | 4274409..4274591 | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp32; PP_03938; phage(gi90592668) | 6e-25 | Click |
| 28 | 4274624..4275190 | PHAGE_Clostr_phiMMP02: hypothetical protein; PP_03939; phage(gi414090394) | 4e-18 | Click |
| 29 | 4275221..4275511 | PHAGE_Staphy_SpaA1: hypothetical secreted or membrane protein; PP_03940; phage(gi399498883) | 4e-08 | Click |
| 30 | 4275515..4275772 | PHAGE_Clostr_CD119: putative holin; PP_03941; phage(gi90592670) | 5e-41 | Click |
| 31 | 4275772..4276587 | PHAGE_Clostr_CD119: putative lysin; PP_03942; phage(gi90592671) | 2e-151 | Click |
| 32 | 4276710..4277765 | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp60; PP_03943; phage(gi90592696) | 2e-94 | Click |
| 33 | 4277903..4278238 | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp41; PP_03944; phage(gi90592677) | 2e-11 | Click |
| 34 | complement(4278249..4278764) | hypothetical protein [Clostridium difficile BI1] gi|384359002|ref|YP_006196857.1|; PP_03945 | 9e-91 | Click |
| 35 | complement(4278847..4279752) | PHAGE_Clostr_phiSM101: putative ATPase; PP_03946; phage(gi110804060) | 3e-24 | Click |
| 36 | complement(4279772..4279975) | hypothetical protein [Clostridium difficile BI1] gi|384359004|ref|YP_006196859.1|; PP_03947 | 7e-31 | Click |
| 37 | complement(4280224..4280682) | hypothetical protein [Clostridium difficile BI1] gi|384359005|ref|YP_006196860.1|; PP_03948 | 6e-78 | Click |
| 38 | complement(4280717..4281019) | hypothetical protein [Clostridium difficile BI1] gi|384359006|ref|YP_006196861.1|; PP_03949 | 1e-49 | Click |
| 39 | complement(4281684..4282418) | hypothetical protein [Clostridium difficile BI1] gi|384359008|ref|YP_006196863.1|; PP_03950 | 3e-133 | Click |
| 40 | complement(4282438..4283238) | hypothetical protein [Clostridium difficile BI1] gi|384359009|ref|YP_006196864.1|; PP_03951 | 4e-155 | Click |
| 41 | complement(4283258..4284445) | PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; PP_03952; phage(gi9631364) | 2e-06 | Click |
| 42 | 4284865..4285554 | PHAGE_Clostr_phiCD6356: helix-turn-helix domain protein; PP_03953; phage(gi326536882) | 7e-48 | Click |
| 43 | complement(4285703..4286086) | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp42; PP_03954; phage(gi90592678) | 8e-14 | Click |
| 44 | complement(4286209..4286364) | hypothetical; PP_03955 | N/A | Click |
| 45 | 4286673..4286828 | hypothetical; PP_03956 | N/A | Click |
| 46 | complement(4286854..4287222) | PHAGE_Clostr_phiCD6356: helix-turn-helix domain protein; PP_03957; phage(gi326536885) | 1e-51 | Click |
| 47 | 4287394..4287555 | PHAGE_Clostr_phiCD6356: hypothetical protein; PP_03958; phage(gi326536886) | 3e-14 | Click |
| 48 | complement(4287856..4288230) | PHAGE_Clostr_CD119: RepR; putative repressor; PP_03959; phage(gi90592681) | 8e-14 | Click |
| 49 | 4288384..4288560 | hypothetical; PP_03960 | N/A | Click |
| 50 | 4288564..4288770 | PHAGE_Clostr_phiCD6356: hypothetical protein; PP_03961; phage(gi326536887) | 2e-14 | Click |
| 51 | 4288799..4289518 | PHAGE_Clostr_phiCD6356: putative phage replication protein; PP_03962; phage(gi326536888) | 2e-32 | Click |
| 52 | 4289546..4289731 | hypothetical protein [Clostridium difficile BI1] gi|384359017|ref|YP_006196872.1|; PP_03963 | 1e-25 | Click |
| 53 | 4289758..4289976 | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp21; PP_03964; phage(gi90592657) | 3e-10 | Click |
| 54 | 4290370..4290630 | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp21; PP_03965; phage(gi90592657) | 6e-09 | Click |
| 55 | 4290949..4291266 | hypothetical protein [Clostridium difficile BI1] gi|384359020|ref|YP_006196875.1|; PP_03966 | 4e-53 | Click |
| 56 | 4291288..4292616 | PHAGE_Marino_P12026: replicative DNA helicase; PP_03967; phage(gi399528354) | 5e-26 | Click |
| 57 | 4292987..4293373 | PHAGE_Strept_MM1: hypothetical protein MM1p17; PP_03968; phage(gi15088759) | 2e-17 | Click |
| 58 | 4293425..4294129 | PHAGE_Clostr_phiCD38_2: hypothetical protein; PP_03969; phage(gi333798150) | 6e-59 | Click |
| 59 | 4294186..4294368 | hypothetical protein [Clostridium difficile BI1] gi|384359024|ref|YP_006196879.1|; PP_03970 | 7e-26 | Click |
| 60 | 4294365..4294742 | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp53; PP_03971; phage(gi90592689) | 2e-20 | Click |
| 61 | 4294759..4295304 | hypothetical protein [Clostridium difficile BI1] gi|384359026|ref|YP_006196881.1|; PP_03972 | 6e-100 | Click |
| 62 | 4295333..4295491 | hypothetical; PP_03973 | N/A | Click |
| 63 | 4295494..4295820 | hypothetical protein [Clostridium difficile BI1] gi|384359027|ref|YP_006196882.1|; PP_03974 | 2e-56 | Click |
| 64 | 4295820..4296356 | hypothetical protein Ccur_12740 [Cryptobacterium curtum DSM 15641] gi|256827677|ref|YP_003151636.1|; PP_03975 | 3e-26 | Click |
| 65 | 4296368..4297174 | hypothetical; PP_03976 | N/A | Click |
| 66 | 4297199..4297459 | hypothetical; PP_03977 | N/A | Click |
| 67 | 4297483..4297968 | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp67; PP_03978; phage(gi90592703) | 4e-19 | Click |
| 68 | 4297988..4298245 | hypothetical protein [Clostridium difficile BI1] gi|384359029|ref|YP_006196884.1|; PP_03979 | 8e-41 | Click |
| 69 | 4298355..4298798 | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp73; PP_03980; phage(gi90592709) | 4e-17 | Click |
| 70 | 4298917..4299486 | hypothetical protein [Clostridium difficile BI1] gi|384359031|ref|YP_006196886.1|; PP_03981 | 4e-86 | Click |
| 71 | 4299351..4299362 | attR AAGAGAAAGAAA | N/A | Click |
| 72 | 4299490..4300134 | PHAGE_Strept_1: site-specific recombinase; PP_03982; phage(gi28876169) | 2e-26 | Click |