Definition Clostridium difficile complete genome, strain 2007855.
Accession FN665654
Length 4,179,867
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 17 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 269369..270067  PHAGE_Prochl_Syn1: phosphoribosylaminoimidazole-succinocarboxamide synthase; PP_00236; phage(gi326784002)  2e-48  Click
2 270079..271446  PHAGE_Parame_FR483: hypothetical protein FR483_N035R; PP_00237; phage(gi155370133)  6e-22  Click
3 271440..272516  PHAGE_Synech_S_SKS1: glycinamide ribonucleotide formyltransferase; PP_00238; phage(gi472340860)  3e-64  Click
4 272510..273103  PHAGE_Burkho_phiE255: gp30, formyl transferase, putative; PP_00239; phage(gi134288807)  1e-06  Click
5 273096..274628  PHAGE_Prochl_P_SSM2: 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase; PP_00240; phage(gi61806062)  5e-61  Click
6 274639..275889  phosphoribosylamine--glycine ligase [Clostridium difficile R20291] gi|260685596|ref|YP_003216729.1|; PP_00241  0.0  Click
7 275914..279720  PHAGE_Microb_Min1: putative phosphoribosyl formylglycinamidine (FGAM) synthase II; PP_00242; phage(gi149882852)  4e-36  Click
8 279926..280798  PHAGE_Escher_phAPEC8: putative dTDP-4-dehydrorhamnose reductase; PP_00243; phage(gi448260370)  1e-34  Click
9 280907..281788  PHAGE_Escher_phAPEC8: putative glucose-1-phosphate thymidylyltransferase; PP_00244; phage(gi448260372)  2e-97  Click
10 281825..282382  PHAGE_Escher_phAPEC8: putative dTDP-4-dehydrorhamnose 3,5-epimerase; PP_00245; phage(gi448260371)  3e-46  Click
11 282420..283403  PHAGE_Escher_phAPEC8: putative dTDP-glucose 4,6-dehydratase; PP_00246; phage(gi448260373)  2e-73  Click
12 283442..284110  PHAGE_Pseudo_KPP12: putative lytic tail protein; PP_00247; phage(gi431811119)  5e-17  Click
13 284119..284547  hypothetical protein CDR20291_0228 [Clostridium difficile R20291] gi|260685603|ref|YP_003216736.1|; PP_00248  2e-73  Click
14 284571..284885  flagellar motor switch protein [Clostridium difficile R20291] gi|260685604|ref|YP_003216737.1|; PP_00249  1e-50  Click
15 285037..285312  PHAGE_Cafete_BV_PW1: putative RecQ-like ATP-dependent DNA helicase; PP_00250; phage(gi310831032)  9e-05  Click
16 285317..285733  flagellar biosynthesis protein [Clostridium difficile R20291] gi|260685606|ref|YP_003216739.1|; PP_00251  5e-71  Click
17 285751..287061  PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; PP_00252; phage(gi9631364)  4e-08  Click
Region 2, total : 8 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 448837..450192  PHAGE_Acanth_moumouvirus: SAM-dependent methyltransferase; PP_00409; phage(gi441432344)  3e-31  Click
2 450173..450184  attL    TTAAACTTATTA  N/A  Click
3 complement(450274..450420)  PHAGE_Strept_5093: integrase; PP_00410; phage(gi238801921)  4e-05  Click
4 450516..450671  transposase mutator type [Clostridium difficile R20291] gi|260688631|ref|YP_003219765.1|; PP_00411  7e-12  Click
5 450715..451749  hypothetical protein CDR20291_0379 [Clostridium difficile R20291] gi|260685753|ref|YP_003216886.1|; PP_00412  0.0  Click
6 451836..452039  PHAGE_Clostr_phiCD38_2: hypothetical protein; PP_00413; phage(gi333798122)  1e-18  Click
7 452210..453370  PHAGE_Bacill_36: low copy number virion structural protein; PP_00414; phage(gi156564190)  9e-08  Click
8 complement(453901..454506)  PROPHAGE_Ralsto_GMI1000: isrso11-transposase orfb protein; PP_00415; phage(gi17546155)  4e-36  Click
9 complement(454794..455465)  PROPHAGE_Ralsto_GMI1000: ISRSO11-transposase ORFA protein; PP_00416; phage(gi17546156)  3e-07  Click
10 462463..462474  attR    TTAAACTTATTA  N/A  Click
Region 3, total : 30 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1423802..1424002  PHAGE_Lactoc_bIL312: Csp; PP_01281; phage(gi13095918)  6e-17  Click
2 1424423..1424851  regulatory protein [Clostridium difficile R20291] gi|260686563|ref|YP_003217696.1|; PP_01282  4e-77  Click
3 complement(1424994..1425749)  peptidyl-prolyl isomerase [Clostridium difficile R20291] gi|260686564|ref|YP_003217697.1|; PP_01283  6e-137  Click
4 complement(1425870..1426004)  hypothetical protein CDR20291_1200 [Clostridium difficile R20291] gi|260686565|ref|YP_003217698.1|; PP_01284  2e-16  Click
5 complement(1426450..1426956)  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp43; PP_01285; phage(gi209901280)  3e-10  Click
6 complement(1427038..1427358)  PHAGE_Staphy_SpaA1: XRE family transcriptional regulator; PP_01286; phage(gi399498895)  9e-13  Click
7 1427527..1427724  PHAGE_Staphy_phiETA: hypothetical protein phiETA_10; PP_01287; phage(gi17426238)  6e-06  Click
8 1427829..1428269  PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp73; PP_01288; phage(gi90592709)  8e-38  Click
9 1428518..1428961  PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp13; PP_01289; phage(gi90592649)  4e-24  Click
10 1428966..1430030  PHAGE_Clostr_phiMMP04: tail sheath; PP_01290; phage(gi414090451)  2e-69  Click
11 1430044..1430472  PHAGE_Clostr_phiMMP04: XkdM-related protein; PP_01291; phage(gi414090452)  8e-08  Click
12 1430586..1431032  PHAGE_Clostr_CD119: XkdN protein; PP_01292; phage(gi90592652)  4e-15  Click
13 1431110..1431226  hypothetical protein CDR20291_1209 [Clostridium difficile R20291] gi|260686574|ref|YP_003217707.1|; PP_01293  1e-14  Click
14 1431226..1433679  PHAGE_Clostr_phiMMP04: tail tape measure; PP_01294; phage(gi414090455)  2e-22  Click
15 1433679..1434101  PHAGE_Clostr_phiMMP04: peptidoglycan-binding lysin domain protein; PP_01295; phage(gi414090456)  2e-47  Click
16 1434383..1435912  PHAGE_Clostr_phiMMP04: cell wall hydrolase; PP_01296; phage(gi414090458)  2e-121  Click
17 1435928..1436254  PHAGE_Clostr_phiMMP04: hypothetical protein; PP_01297; phage(gi414090459)  3e-55  Click
18 1436254..1436682  PHAGE_Clostr_phiMMP04: XkdS-related protein; PP_01298; phage(gi414090460)  1e-63  Click
19 1436675..1437727  PHAGE_Clostr_phiMMP04: baseplate J-like assembly protein; PP_01299; phage(gi414090461)  1e-140  Click
20 1437724..1438422  PHAGE_Clostr_phiMMP04: hypothetical protein; PP_01300; phage(gi414090462)  2e-52  Click
21 1438423..1439409  PHAGE_Clostr_phiMMP04: tail fiber; PP_01301; phage(gi414090463)  1e-49  Click
22 1439431..1444608  PHAGE_Bathyc_BpV1: hypothetical protein; PP_01302; phage(gi313768166)  3e-20  Click
23 1444625..1444978  hypothetical protein CDR20291_1219 [Clostridium difficile R20291] gi|260686584|ref|YP_003217717.1|; PP_01303  2e-13  Click
24 1445241..1445501  PHAGE_Clostr_phiCD38_2: putative holin; PP_01304; phage(gi333798129)  4e-37  Click
25 complement(1445726..1446181)  hypothetical protein CDR20291_1221 [Clostridium difficile R20291] gi|260686586|ref|YP_003217719.1|; PP_01305  1e-78  Click
26 complement(1446409..1446828)  PHAGE_Strept_3: putative cI-like repressor; PP_01306; phage(gi28876313)  6e-08  Click
27 1447127..1447336  PHAGE_Bacill_BCJA1c: cro; PP_01307; phage(gi56694875)  4e-08  Click
28 1447368..1447577  hypothetical protein CDR20291_1224 [Clostridium difficile R20291] gi|260686589|ref|YP_003217722.1|; PP_01308  8e-33  Click
29 complement(1447794..1448192)  PHAGE_Lister_A118: putative repressor protein; PP_01309; phage(gi16798819)  1e-08  Click
30 complement(1448613..1451105)  PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; PP_01310; phage(gi9631364)  2e-12  Click
Region 4, total : 71 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1666638..1666657  attL    TATTACAACTTAAGTAAATA  N/A  Click
2 complement(1666842..1667972)  PHAGE_Clostr_phiC2: putative integrase; PP_01506; phage(gi134287379)  3e-137  Click
3 complement(1668051..1668758)  hypothetical protein CDR20291_1416 [Clostridium difficile R20291] gi|260686780|ref|YP_003217913.1|; PP_01507  1e-135  Click
4 complement(1668771..1669640)  HipA-like protein [Clostridium difficile R20291] gi|260686781|ref|YP_003217914.1|; PP_01508  2e-168  Click
5 complement(1670260..1670766)  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp43; PP_01509; phage(gi209901280)  4e-09  Click
6 complement(1670842..1671390)  PHAGE_Clostr_phiC2: putative repressor; PP_01510; phage(gi134287382)  1e-19  Click
7 complement(1671402..1671743)  PHAGE_Clostr_phiC2: putative repressor; PP_01511; phage(gi134287382)  2e-11  Click
8 1671921..1672124  PHAGE_Strept_Sfi21: cro-repressor; PP_01512; phage(gi9632966)  4e-07  Click
9 1672172..1672981  PHAGE_Staphy_88: ORF019; PP_01513; phage(gi66396351)  2e-57  Click
10 1673028..1673237  hypothetical; PP_01514  N/A  Click
11 complement(1673247..1673621)  hypothetical protein Desmer_1153 [Desulfosporosinus meridiei DSM 13257] gi|402571698|ref|YP_006621041.1|; PP_01515  3e-14  Click
12 1673697..1673894  PHAGE_Clostr_phiC2: putative repressor; PP_01516; phage(gi134287390)  5e-19  Click
13 1673925..1674317  PHAGE_Clostr_phiC2: hypothetical protein phiC2p59; PP_01517; phage(gi134287391)  7e-21  Click
14 1674304..1674447  hypothetical; PP_01518  N/A  Click
15 1674518..1674955  PHAGE_Entero_phiFL4A: hypothetical protein; PP_01519; phage(gi281416448)  1e-08  Click
16 1674967..1676133  PHAGE_Staphy_phi2958PVL: hypothetical protein phi2958PVL_gp17; PP_01520; phage(gi209363569)  3e-100  Click
17 1676148..1676483  hypothetical protein H04402_02629 [Clostridium botulinum H04402 065] gi|387818822|ref|YP_005679169.1|; PP_01521  5e-08  Click
18 1676536..1677108  hypothetical protein CDR20291_1422 [Clostridium difficile R20291] gi|260686786|ref|YP_003217919.1|; PP_01522  3e-105  Click
19 1677131..1677703  PHAGE_Bacill_PBC1: hypothetical protein; PP_01523; phage(gi389060352)  2e-52  Click
20 1677703..1679661  PHAGE_Bacill_PBC1: DNA polymerase; PP_01524; phage(gi389060355)  0.0  Click
21 1679673..1682090  PHAGE_Entero_phiFL4A: VirE domain protein; PP_01525; phage(gi281416460)  0.0  Click
22 1682074..1682199  hypothetical; PP_01526  N/A  Click
23 1682372..1682698  PHAGE_Staphy_2638A: ORF037; PP_01527; phage(gi66395482)  3e-15  Click
24 1682728..1684017  PHAGE_Entero_phiFL4A: DNA helicase; PP_01528; phage(gi281416462)  9e-148  Click
25 1684041..1684178  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp67; PP_01529; phage(gi209901304)  9e-05  Click
26 1684171..1684650  PHAGE_Clostr_PhiS63: gp40; PP_01530; phage(gi388570666)  1e-40  Click
27 1684933..1685385  PHAGE_Clostr_phiMMP02: phage repressor; PP_01531; phage(gi414090441)  2e-71  Click
28 1685677..1686651  hypothetical protein CDR20291_1429 [Clostridium difficile R20291] gi|260686793|ref|YP_003217926.1|; PP_01532  0.0  Click
29 1686672..1687181  hypothetical protein CDR20291_1430 [Clostridium difficile R20291] gi|260686794|ref|YP_003217927.1|; PP_01533  3e-89  Click
30 1687251..1687943  PHAGE_Clostr_phiC2: putative terminase small subunit; PP_01534; phage(gi134287336)  1e-126  Click
31 1687933..1689174  PHAGE_Clostr_phiC2: putative terminase large subunit; PP_01535; phage(gi134287337)  0.0  Click
32 1689180..1690622  PHAGE_Clostr_phiC2: putative portal protein; PP_01536; phage(gi134287338)  0.0  Click
33 1690612..1692147  PHAGE_Clostr_phiC2: putative head morphogenesis protein; PP_01537; phage(gi134287339)  0.0  Click
34 1692149..1692397  hypothetical; PP_01538  N/A  Click
35 1692465..1693028  PHAGE_Clostr_phiC2: putative scaffold protein; PP_01539; phage(gi134287341)  4e-104  Click
36 1693040..1693930  PHAGE_Clostr_phiC2: putative main capsid protein; PP_01540; phage(gi134287342)  5e-168  Click
37 1693949..1694182  PHAGE_Clostr_phiC2: hypothetical protein phiC2p08; PP_01541; phage(gi134287343)  1e-34  Click
38 1694192..1694593  PHAGE_Clostr_phiC2: hypothetical protein phiC2p09; PP_01542; phage(gi134287344)  2e-69  Click
39 1694587..1694934  PHAGE_Clostr_phiC2: hypothetical protein phiC2p10; PP_01543; phage(gi134287345)  3e-59  Click
40 1694934..1695224  PHAGE_Clostr_phiC2: hypothetical protein phiC2p11; PP_01544; phage(gi134287346)  1e-46  Click
41 1695334..1696140  PHAGE_Clostr_phiCP26F: hypothetical protein; PP_01545; phage(gi422933952)  2e-50  Click
42 1696489..1696926  PHAGE_Clostr_phiC2: hypothetical protein phiC2p12; PP_01546; phage(gi134287347)  8e-78  Click
43 1696919..1697095  hypothetical protein Sterm_1436 [Sebaldella termitidis ATCC 33386] gi|269120052|ref|YP_003308229.1|; PP_01547  3e-06  Click
44 1697096..1698406  PHAGE_Clostr_phiC2: putative sheath tail protein; PP_01548; phage(gi134287348)  0.0  Click
45 1698423..1698893  PHAGE_Clostr_phiC2: putative core tail; PP_01549; phage(gi134287349)  5e-73  Click
46 1698952..1699779  PHAGE_Clostr_phiCP26F: hypothetical protein; PP_01550; phage(gi422933952)  5e-42  Click
47 1699851..1700291  PHAGE_Clostr_phiC2: hypothetical protein phiC2p16; PP_01551; phage(gi134287351)  2e-49  Click
48 1700366..1700485  hypothetical; PP_01552  N/A  Click
49 1702130..1702318  hypothetical; PP_01553  N/A  Click
50 1702436..1703302  PHAGE_Lactob_Lj965: putative antirepressor; PP_01554; phage(gi41179234)  1e-07  Click
51 1703355..1703489  hypothetical; PP_01555  N/A  Click
52 1704167..1704694  PHAGE_Clostr_phiC2: hypothetical protein phiC2p18; PP_01556; phage(gi134287353)  4e-93  Click
53 1704832..1705599  PHAGE_Thermo_THSA_485A: hypothetical protein; PP_01557; phage(gi397912628)  4e-35  Click
54 1705665..1708037  PHAGE_Clostr_phiC2: putative tail tape measure protein; PP_01558; phage(gi134287355)  2e-166  Click
55 1708054..1708743  PHAGE_Clostr_phiC2: putative LysM; PP_01559; phage(gi134287356)  1e-109  Click
56 1708736..1710628  PHAGE_Clostr_phiC2: putative hydrolase; PP_01560; phage(gi134287357)  0.0  Click
57 1710642..1710902  PHAGE_Clostr_phiC2: hypothetical protein phiC2p23; PP_01561; phage(gi134287358)  1e-35  Click
58 1710907..1711326  PHAGE_Strept_1: hypothetical protein EJ-1p60; PP_01562; phage(gi39653734)  6e-21  Click
59 1711327..1712376  PHAGE_Clostr_phiC2: hypothetical protein phiC2p25; PP_01563; phage(gi134287359)  0.0  Click
60 1712369..1712986  PHAGE_Clostr_phiC2: hypothetical protein phiC2p26; PP_01564; phage(gi134287360)  1e-114  Click
61 1712998..1714023  PHAGE_Clostr_phiC2: putative tail fiber protein; PP_01565; phage(gi134287361)  2e-166  Click
62 1714040..1715566  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp26; PP_01566; phage(gi209901263)  1e-94  Click
63 1715581..1715874  PHAGE_Clostr_phiCD6356: hypothetical protein; PP_01567; phage(gi326536870)  2e-40  Click
64 1715874..1716056  PHAGE_Clostr_phiC2: hypothetical protein phiC2p34; PP_01568; phage(gi134287367)  3e-26  Click
65 1716090..1716656  PHAGE_Clostr_phiC2: hypothetical protein phiC2p30; PP_01569; phage(gi134287363)  5e-12  Click
66 1716687..1716977  PHAGE_Staphy_SpaA1: hypothetical secreted or membrane protein; PP_01570; phage(gi399498883)  3e-08  Click
67 1716981..1717238  PHAGE_Clostr_phiC2: holin; PP_01571; phage(gi134287369)  1e-43  Click
68 1717499..1718362  PHAGE_Clostr_phiC2: putative abortive infection bacteriophage resistance protein ORF 37; PP_01572; phage(gi134287370)  2e-166  Click
69 1718441..1719253  PHAGE_Clostr_phiC2: putative amidase/endolysin; PP_01573; phage(gi134287371)  2e-143  Click
70 1719347..1721746  PHAGE_Amsact_: Possible surface protein; PP_01574; phage(gi9964577)  1e-22  Click
71 complement(1721787..1721972)  PHAGE_Clostr_phiCD6356: hypothetical protein; PP_01575; phage(gi326536880)  1e-10  Click
72 complement(1722201..1722329)  PHAGE_Clostr_phiMMP04: hypothetical protein; PP_01576; phage(gi414090472)  2e-10  Click
73 1722613..1722632  attR    TATTACAACTTAAGTAAATA  N/A  Click