Definition | Clostridium difficile complete genome, strain 2007855. |
---|---|
Accession | FN665654 |
Length | 4,179,867 |
Legend
Hits against Virus and prophage DB | |
Hits against Bacterial DB or GenBank file |
Region 1, total : 17 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 269369..270067 | PHAGE_Prochl_Syn1: phosphoribosylaminoimidazole-succinocarboxamide synthase; PP_00236; phage(gi326784002) | 2e-48 | Click |
2 | 270079..271446 | PHAGE_Parame_FR483: hypothetical protein FR483_N035R; PP_00237; phage(gi155370133) | 6e-22 | Click |
3 | 271440..272516 | PHAGE_Synech_S_SKS1: glycinamide ribonucleotide formyltransferase; PP_00238; phage(gi472340860) | 3e-64 | Click |
4 | 272510..273103 | PHAGE_Burkho_phiE255: gp30, formyl transferase, putative; PP_00239; phage(gi134288807) | 1e-06 | Click |
5 | 273096..274628 | PHAGE_Prochl_P_SSM2: 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase; PP_00240; phage(gi61806062) | 5e-61 | Click |
6 | 274639..275889 | phosphoribosylamine--glycine ligase [Clostridium difficile R20291] gi|260685596|ref|YP_003216729.1|; PP_00241 | 0.0 | Click |
7 | 275914..279720 | PHAGE_Microb_Min1: putative phosphoribosyl formylglycinamidine (FGAM) synthase II; PP_00242; phage(gi149882852) | 4e-36 | Click |
8 | 279926..280798 | PHAGE_Escher_phAPEC8: putative dTDP-4-dehydrorhamnose reductase; PP_00243; phage(gi448260370) | 1e-34 | Click |
9 | 280907..281788 | PHAGE_Escher_phAPEC8: putative glucose-1-phosphate thymidylyltransferase; PP_00244; phage(gi448260372) | 2e-97 | Click |
10 | 281825..282382 | PHAGE_Escher_phAPEC8: putative dTDP-4-dehydrorhamnose 3,5-epimerase; PP_00245; phage(gi448260371) | 3e-46 | Click |
11 | 282420..283403 | PHAGE_Escher_phAPEC8: putative dTDP-glucose 4,6-dehydratase; PP_00246; phage(gi448260373) | 2e-73 | Click |
12 | 283442..284110 | PHAGE_Pseudo_KPP12: putative lytic tail protein; PP_00247; phage(gi431811119) | 5e-17 | Click |
13 | 284119..284547 | hypothetical protein CDR20291_0228 [Clostridium difficile R20291] gi|260685603|ref|YP_003216736.1|; PP_00248 | 2e-73 | Click |
14 | 284571..284885 | flagellar motor switch protein [Clostridium difficile R20291] gi|260685604|ref|YP_003216737.1|; PP_00249 | 1e-50 | Click |
15 | 285037..285312 | PHAGE_Cafete_BV_PW1: putative RecQ-like ATP-dependent DNA helicase; PP_00250; phage(gi310831032) | 9e-05 | Click |
16 | 285317..285733 | flagellar biosynthesis protein [Clostridium difficile R20291] gi|260685606|ref|YP_003216739.1|; PP_00251 | 5e-71 | Click |
17 | 285751..287061 | PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; PP_00252; phage(gi9631364) | 4e-08 | Click |
Region 2, total : 8 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 448837..450192 | PHAGE_Acanth_moumouvirus: SAM-dependent methyltransferase; PP_00409; phage(gi441432344) | 3e-31 | Click |
2 | 450173..450184 | attL TTAAACTTATTA | N/A | Click |
3 | complement(450274..450420) | PHAGE_Strept_5093: integrase; PP_00410; phage(gi238801921) | 4e-05 | Click |
4 | 450516..450671 | transposase mutator type [Clostridium difficile R20291] gi|260688631|ref|YP_003219765.1|; PP_00411 | 7e-12 | Click |
5 | 450715..451749 | hypothetical protein CDR20291_0379 [Clostridium difficile R20291] gi|260685753|ref|YP_003216886.1|; PP_00412 | 0.0 | Click |
6 | 451836..452039 | PHAGE_Clostr_phiCD38_2: hypothetical protein; PP_00413; phage(gi333798122) | 1e-18 | Click |
7 | 452210..453370 | PHAGE_Bacill_36: low copy number virion structural protein; PP_00414; phage(gi156564190) | 9e-08 | Click |
8 | complement(453901..454506) | PROPHAGE_Ralsto_GMI1000: isrso11-transposase orfb protein; PP_00415; phage(gi17546155) | 4e-36 | Click |
9 | complement(454794..455465) | PROPHAGE_Ralsto_GMI1000: ISRSO11-transposase ORFA protein; PP_00416; phage(gi17546156) | 3e-07 | Click |
10 | 462463..462474 | attR TTAAACTTATTA | N/A | Click |
Region 3, total : 30 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1423802..1424002 | PHAGE_Lactoc_bIL312: Csp; PP_01281; phage(gi13095918) | 6e-17 | Click |
2 | 1424423..1424851 | regulatory protein [Clostridium difficile R20291] gi|260686563|ref|YP_003217696.1|; PP_01282 | 4e-77 | Click |
3 | complement(1424994..1425749) | peptidyl-prolyl isomerase [Clostridium difficile R20291] gi|260686564|ref|YP_003217697.1|; PP_01283 | 6e-137 | Click |
4 | complement(1425870..1426004) | hypothetical protein CDR20291_1200 [Clostridium difficile R20291] gi|260686565|ref|YP_003217698.1|; PP_01284 | 2e-16 | Click |
5 | complement(1426450..1426956) | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp43; PP_01285; phage(gi209901280) | 3e-10 | Click |
6 | complement(1427038..1427358) | PHAGE_Staphy_SpaA1: XRE family transcriptional regulator; PP_01286; phage(gi399498895) | 9e-13 | Click |
7 | 1427527..1427724 | PHAGE_Staphy_phiETA: hypothetical protein phiETA_10; PP_01287; phage(gi17426238) | 6e-06 | Click |
8 | 1427829..1428269 | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp73; PP_01288; phage(gi90592709) | 8e-38 | Click |
9 | 1428518..1428961 | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp13; PP_01289; phage(gi90592649) | 4e-24 | Click |
10 | 1428966..1430030 | PHAGE_Clostr_phiMMP04: tail sheath; PP_01290; phage(gi414090451) | 2e-69 | Click |
11 | 1430044..1430472 | PHAGE_Clostr_phiMMP04: XkdM-related protein; PP_01291; phage(gi414090452) | 8e-08 | Click |
12 | 1430586..1431032 | PHAGE_Clostr_CD119: XkdN protein; PP_01292; phage(gi90592652) | 4e-15 | Click |
13 | 1431110..1431226 | hypothetical protein CDR20291_1209 [Clostridium difficile R20291] gi|260686574|ref|YP_003217707.1|; PP_01293 | 1e-14 | Click |
14 | 1431226..1433679 | PHAGE_Clostr_phiMMP04: tail tape measure; PP_01294; phage(gi414090455) | 2e-22 | Click |
15 | 1433679..1434101 | PHAGE_Clostr_phiMMP04: peptidoglycan-binding lysin domain protein; PP_01295; phage(gi414090456) | 2e-47 | Click |
16 | 1434383..1435912 | PHAGE_Clostr_phiMMP04: cell wall hydrolase; PP_01296; phage(gi414090458) | 2e-121 | Click |
17 | 1435928..1436254 | PHAGE_Clostr_phiMMP04: hypothetical protein; PP_01297; phage(gi414090459) | 3e-55 | Click |
18 | 1436254..1436682 | PHAGE_Clostr_phiMMP04: XkdS-related protein; PP_01298; phage(gi414090460) | 1e-63 | Click |
19 | 1436675..1437727 | PHAGE_Clostr_phiMMP04: baseplate J-like assembly protein; PP_01299; phage(gi414090461) | 1e-140 | Click |
20 | 1437724..1438422 | PHAGE_Clostr_phiMMP04: hypothetical protein; PP_01300; phage(gi414090462) | 2e-52 | Click |
21 | 1438423..1439409 | PHAGE_Clostr_phiMMP04: tail fiber; PP_01301; phage(gi414090463) | 1e-49 | Click |
22 | 1439431..1444608 | PHAGE_Bathyc_BpV1: hypothetical protein; PP_01302; phage(gi313768166) | 3e-20 | Click |
23 | 1444625..1444978 | hypothetical protein CDR20291_1219 [Clostridium difficile R20291] gi|260686584|ref|YP_003217717.1|; PP_01303 | 2e-13 | Click |
24 | 1445241..1445501 | PHAGE_Clostr_phiCD38_2: putative holin; PP_01304; phage(gi333798129) | 4e-37 | Click |
25 | complement(1445726..1446181) | hypothetical protein CDR20291_1221 [Clostridium difficile R20291] gi|260686586|ref|YP_003217719.1|; PP_01305 | 1e-78 | Click |
26 | complement(1446409..1446828) | PHAGE_Strept_3: putative cI-like repressor; PP_01306; phage(gi28876313) | 6e-08 | Click |
27 | 1447127..1447336 | PHAGE_Bacill_BCJA1c: cro; PP_01307; phage(gi56694875) | 4e-08 | Click |
28 | 1447368..1447577 | hypothetical protein CDR20291_1224 [Clostridium difficile R20291] gi|260686589|ref|YP_003217722.1|; PP_01308 | 8e-33 | Click |
29 | complement(1447794..1448192) | PHAGE_Lister_A118: putative repressor protein; PP_01309; phage(gi16798819) | 1e-08 | Click |
30 | complement(1448613..1451105) | PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; PP_01310; phage(gi9631364) | 2e-12 | Click |
Region 4, total : 71 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1666638..1666657 | attL TATTACAACTTAAGTAAATA | N/A | Click |
2 | complement(1666842..1667972) | PHAGE_Clostr_phiC2: putative integrase; PP_01506; phage(gi134287379) | 3e-137 | Click |
3 | complement(1668051..1668758) | hypothetical protein CDR20291_1416 [Clostridium difficile R20291] gi|260686780|ref|YP_003217913.1|; PP_01507 | 1e-135 | Click |
4 | complement(1668771..1669640) | HipA-like protein [Clostridium difficile R20291] gi|260686781|ref|YP_003217914.1|; PP_01508 | 2e-168 | Click |
5 | complement(1670260..1670766) | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp43; PP_01509; phage(gi209901280) | 4e-09 | Click |
6 | complement(1670842..1671390) | PHAGE_Clostr_phiC2: putative repressor; PP_01510; phage(gi134287382) | 1e-19 | Click |
7 | complement(1671402..1671743) | PHAGE_Clostr_phiC2: putative repressor; PP_01511; phage(gi134287382) | 2e-11 | Click |
8 | 1671921..1672124 | PHAGE_Strept_Sfi21: cro-repressor; PP_01512; phage(gi9632966) | 4e-07 | Click |
9 | 1672172..1672981 | PHAGE_Staphy_88: ORF019; PP_01513; phage(gi66396351) | 2e-57 | Click |
10 | 1673028..1673237 | hypothetical; PP_01514 | N/A | Click |
11 | complement(1673247..1673621) | hypothetical protein Desmer_1153 [Desulfosporosinus meridiei DSM 13257] gi|402571698|ref|YP_006621041.1|; PP_01515 | 3e-14 | Click |
12 | 1673697..1673894 | PHAGE_Clostr_phiC2: putative repressor; PP_01516; phage(gi134287390) | 5e-19 | Click |
13 | 1673925..1674317 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p59; PP_01517; phage(gi134287391) | 7e-21 | Click |
14 | 1674304..1674447 | hypothetical; PP_01518 | N/A | Click |
15 | 1674518..1674955 | PHAGE_Entero_phiFL4A: hypothetical protein; PP_01519; phage(gi281416448) | 1e-08 | Click |
16 | 1674967..1676133 | PHAGE_Staphy_phi2958PVL: hypothetical protein phi2958PVL_gp17; PP_01520; phage(gi209363569) | 3e-100 | Click |
17 | 1676148..1676483 | hypothetical protein H04402_02629 [Clostridium botulinum H04402 065] gi|387818822|ref|YP_005679169.1|; PP_01521 | 5e-08 | Click |
18 | 1676536..1677108 | hypothetical protein CDR20291_1422 [Clostridium difficile R20291] gi|260686786|ref|YP_003217919.1|; PP_01522 | 3e-105 | Click |
19 | 1677131..1677703 | PHAGE_Bacill_PBC1: hypothetical protein; PP_01523; phage(gi389060352) | 2e-52 | Click |
20 | 1677703..1679661 | PHAGE_Bacill_PBC1: DNA polymerase; PP_01524; phage(gi389060355) | 0.0 | Click |
21 | 1679673..1682090 | PHAGE_Entero_phiFL4A: VirE domain protein; PP_01525; phage(gi281416460) | 0.0 | Click |
22 | 1682074..1682199 | hypothetical; PP_01526 | N/A | Click |
23 | 1682372..1682698 | PHAGE_Staphy_2638A: ORF037; PP_01527; phage(gi66395482) | 3e-15 | Click |
24 | 1682728..1684017 | PHAGE_Entero_phiFL4A: DNA helicase; PP_01528; phage(gi281416462) | 9e-148 | Click |
25 | 1684041..1684178 | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp67; PP_01529; phage(gi209901304) | 9e-05 | Click |
26 | 1684171..1684650 | PHAGE_Clostr_PhiS63: gp40; PP_01530; phage(gi388570666) | 1e-40 | Click |
27 | 1684933..1685385 | PHAGE_Clostr_phiMMP02: phage repressor; PP_01531; phage(gi414090441) | 2e-71 | Click |
28 | 1685677..1686651 | hypothetical protein CDR20291_1429 [Clostridium difficile R20291] gi|260686793|ref|YP_003217926.1|; PP_01532 | 0.0 | Click |
29 | 1686672..1687181 | hypothetical protein CDR20291_1430 [Clostridium difficile R20291] gi|260686794|ref|YP_003217927.1|; PP_01533 | 3e-89 | Click |
30 | 1687251..1687943 | PHAGE_Clostr_phiC2: putative terminase small subunit; PP_01534; phage(gi134287336) | 1e-126 | Click |
31 | 1687933..1689174 | PHAGE_Clostr_phiC2: putative terminase large subunit; PP_01535; phage(gi134287337) | 0.0 | Click |
32 | 1689180..1690622 | PHAGE_Clostr_phiC2: putative portal protein; PP_01536; phage(gi134287338) | 0.0 | Click |
33 | 1690612..1692147 | PHAGE_Clostr_phiC2: putative head morphogenesis protein; PP_01537; phage(gi134287339) | 0.0 | Click |
34 | 1692149..1692397 | hypothetical; PP_01538 | N/A | Click |
35 | 1692465..1693028 | PHAGE_Clostr_phiC2: putative scaffold protein; PP_01539; phage(gi134287341) | 4e-104 | Click |
36 | 1693040..1693930 | PHAGE_Clostr_phiC2: putative main capsid protein; PP_01540; phage(gi134287342) | 5e-168 | Click |
37 | 1693949..1694182 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p08; PP_01541; phage(gi134287343) | 1e-34 | Click |
38 | 1694192..1694593 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p09; PP_01542; phage(gi134287344) | 2e-69 | Click |
39 | 1694587..1694934 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p10; PP_01543; phage(gi134287345) | 3e-59 | Click |
40 | 1694934..1695224 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p11; PP_01544; phage(gi134287346) | 1e-46 | Click |
41 | 1695334..1696140 | PHAGE_Clostr_phiCP26F: hypothetical protein; PP_01545; phage(gi422933952) | 2e-50 | Click |
42 | 1696489..1696926 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p12; PP_01546; phage(gi134287347) | 8e-78 | Click |
43 | 1696919..1697095 | hypothetical protein Sterm_1436 [Sebaldella termitidis ATCC 33386] gi|269120052|ref|YP_003308229.1|; PP_01547 | 3e-06 | Click |
44 | 1697096..1698406 | PHAGE_Clostr_phiC2: putative sheath tail protein; PP_01548; phage(gi134287348) | 0.0 | Click |
45 | 1698423..1698893 | PHAGE_Clostr_phiC2: putative core tail; PP_01549; phage(gi134287349) | 5e-73 | Click |
46 | 1698952..1699779 | PHAGE_Clostr_phiCP26F: hypothetical protein; PP_01550; phage(gi422933952) | 5e-42 | Click |
47 | 1699851..1700291 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p16; PP_01551; phage(gi134287351) | 2e-49 | Click |
48 | 1700366..1700485 | hypothetical; PP_01552 | N/A | Click |
49 | 1702130..1702318 | hypothetical; PP_01553 | N/A | Click |
50 | 1702436..1703302 | PHAGE_Lactob_Lj965: putative antirepressor; PP_01554; phage(gi41179234) | 1e-07 | Click |
51 | 1703355..1703489 | hypothetical; PP_01555 | N/A | Click |
52 | 1704167..1704694 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p18; PP_01556; phage(gi134287353) | 4e-93 | Click |
53 | 1704832..1705599 | PHAGE_Thermo_THSA_485A: hypothetical protein; PP_01557; phage(gi397912628) | 4e-35 | Click |
54 | 1705665..1708037 | PHAGE_Clostr_phiC2: putative tail tape measure protein; PP_01558; phage(gi134287355) | 2e-166 | Click |
55 | 1708054..1708743 | PHAGE_Clostr_phiC2: putative LysM; PP_01559; phage(gi134287356) | 1e-109 | Click |
56 | 1708736..1710628 | PHAGE_Clostr_phiC2: putative hydrolase; PP_01560; phage(gi134287357) | 0.0 | Click |
57 | 1710642..1710902 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p23; PP_01561; phage(gi134287358) | 1e-35 | Click |
58 | 1710907..1711326 | PHAGE_Strept_1: hypothetical protein EJ-1p60; PP_01562; phage(gi39653734) | 6e-21 | Click |
59 | 1711327..1712376 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p25; PP_01563; phage(gi134287359) | 0.0 | Click |
60 | 1712369..1712986 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p26; PP_01564; phage(gi134287360) | 1e-114 | Click |
61 | 1712998..1714023 | PHAGE_Clostr_phiC2: putative tail fiber protein; PP_01565; phage(gi134287361) | 2e-166 | Click |
62 | 1714040..1715566 | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp26; PP_01566; phage(gi209901263) | 1e-94 | Click |
63 | 1715581..1715874 | PHAGE_Clostr_phiCD6356: hypothetical protein; PP_01567; phage(gi326536870) | 2e-40 | Click |
64 | 1715874..1716056 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p34; PP_01568; phage(gi134287367) | 3e-26 | Click |
65 | 1716090..1716656 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p30; PP_01569; phage(gi134287363) | 5e-12 | Click |
66 | 1716687..1716977 | PHAGE_Staphy_SpaA1: hypothetical secreted or membrane protein; PP_01570; phage(gi399498883) | 3e-08 | Click |
67 | 1716981..1717238 | PHAGE_Clostr_phiC2: holin; PP_01571; phage(gi134287369) | 1e-43 | Click |
68 | 1717499..1718362 | PHAGE_Clostr_phiC2: putative abortive infection bacteriophage resistance protein ORF 37; PP_01572; phage(gi134287370) | 2e-166 | Click |
69 | 1718441..1719253 | PHAGE_Clostr_phiC2: putative amidase/endolysin; PP_01573; phage(gi134287371) | 2e-143 | Click |
70 | 1719347..1721746 | PHAGE_Amsact_: Possible surface protein; PP_01574; phage(gi9964577) | 1e-22 | Click |
71 | complement(1721787..1721972) | PHAGE_Clostr_phiCD6356: hypothetical protein; PP_01575; phage(gi326536880) | 1e-10 | Click |
72 | complement(1722201..1722329) | PHAGE_Clostr_phiMMP04: hypothetical protein; PP_01576; phage(gi414090472) | 2e-10 | Click |
73 | 1722613..1722632 | attR TATTACAACTTAAGTAAATA | N/A | Click |