Definition Yersinia pestis A1122, complete genome.
Accession CP002956
Length 4,553,770
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 15 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1683677..1684282  PHAGE_Acinet_Ac42: hypothetical protein; A1122_07605; phage(gi311992578)  7e-19  Click
2 complement(1684472..1685326)  putative S-transferase; A1122_07610  N/A  Click
3 1685577..1686923  hypothetical protein; A1122_07615  N/A  Click
4 complement(1687030..1688205)  PHAGE_Clostr_phiCD38_2: tail tape measure; A1122_07620; phage(gi333798123)  7e-05  Click
5 1688465..1688620  invasin; A1122_07625  N/A  Click
6 1688610..1689068  PHAGE_Hypert_2: IS element Dka2 orfA; A1122_07630; phage(gi300116744)  4e-15  Click
7 complement(1689251..1689463)  PHAGE_Lactoc_bIL312: Csp; A1122_07635; phage(gi13095918)  4e-17  Click
8 complement(1689723..1689935)  PHAGE_Lactoc_bIL312: Csp; A1122_07640; phage(gi13095918)  3e-17  Click
9 1690180..1690377  hypothetical protein; A1122_07645  N/A  Click
10 complement(1690468..1690935)  PHAGE_Escher_TL_2011b: putative outer membrane lipoprotein; A1122_07650; phage(gi418487638)  2e-08  Click
11 1691411..1692223  hypothetical protein; A1122_07655  N/A  Click
12 1692288..1693178  PHAGE_Synech_S_SM1: 6-phosphogluconate dehydrogenase; A1122_07660; phage(gi326782617)  5e-11  Click
13 1693356..1693751  putative gamma carboxymuconolactone decarboxylase; A1122_07665  N/A  Click
14 1693905..1695269  PHAGE_Burkho_phi1026b: gp59; A1122_07670; phage(gi38707949)  1e-21  Click
15 1695359..1696021  PHAGE_Strept_phiC31: gp26; A1122_07675; phage(gi40807292)  3e-05  Click
Region 2, total : 55 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 3355059..3356258  PHAGE_Africa_virus: NifS-like protein; A1122_15450; phage(gi9628230)  4e-08  Click
2 3356262..3357434  hypothetical protein; A1122_15455  N/A  Click
3 3357739..3358947  PROPHAGE_Escher_CFT073: transposase; A1122_15460; phage(gi26246249)  0.0  Click
4 complement(3359168..3359587)  PHAGE_Bacter_2: tail fiber; A1122_15465; phage(gi212499733)  2e-10  Click
5 complement(3359598..3360515)  PHAGE_Salmon_SSU5: putative phage tail fiber protein; A1122_15470; phage(gi410491431)  2e-09  Click
6 complement(3360532..3361530)  PHAGE_Cronob_phiES15: hypothetical protein; A1122_15475; phage(gi401817612)  7e-25  Click
7 3360885..3360896  attL    TTGGCGGCTCAG  N/A  Click
8 complement(3361530..3364733)  PHAGE_Cronob_phiES15: putative host specificity protein; A1122_15480; phage(gi401817611)  0.0  Click
9 complement(3365099..3365263)  hypothetical protein; A1122_15485  N/A  Click
10 complement(3365305..3365925)  PHAGE_Entero_mEpX2: tail assembly protein; A1122_15490; phage(gi428765633)  9e-66  Click
11 complement(3365981..3366331)  PHAGE_Entero_mEpX2: hypothetical protein; A1122_15495; phage(gi428765632)  8e-14  Click
12 complement(3366339..3366890)  PHAGE_Cronob_phiES15: hypothetical protein; A1122_15500; phage(gi401817606)  5e-08  Click
13 complement(3366989..3367996)  PHAGE_Haemop_Aaphi23: putative antirepressor protein Ant; A1122_15505; phage(gi31544021)  4e-37  Click
14 complement(3368070..3368237)  PHAGE_Escher_TL_2011b: hypothetical protein; A1122_15510; phage(gi418487672)  6e-15  Click
15 3368253..3368792  PHAGE_Escher_TL_2011b: hypothetical protein; A1122_15515; phage(gi418487671)  3e-32  Click
16 complement(3368871..3369503)  hypothetical protein; A1122_15520  N/A  Click
17 complement(3369764..3370474)  PHAGE_Entero_HK140: minor tail protein K; A1122_15525; phage(gi428781957)  8e-109  Click
18 complement(3370477..3371229)  PHAGE_Entero_HK225: minor tail protein; A1122_15530; phage(gi428782393)  3e-101  Click
19 complement(3371350..3371808)  PROPHAGE_Salmon_Ty2: transposase; A1122_15535; phage(gi29143766)  5e-84  Click
20 complement(3372113..3372454)  PHAGE_Cronob_phiES15: putative minor tail protein; A1122_15540; phage(gi401817607)  2e-31  Click
21 complement(3372457..3375960)  PHAGE_Entero_mEp213: tail length tape measure protein; A1122_15545; phage(gi428782602)  5e-152  Click
22 complement(3375961..3376182)  PHAGE_Cronob_phiES15: hypothetical protein; A1122_15550; phage(gi401817604)  6e-14  Click
23 complement(3376269..3376580)  PHAGE_Cronob_phiES15: hypothetical protein; A1122_15555; phage(gi401817603)  9e-32  Click
24 complement(3376593..3377513)  PHAGE_Cronob_phiES15: putative major tail protein; A1122_15560; phage(gi401817602)  3e-75  Click
25 complement(3377579..3377986)  PHAGE_Cronob_phiES15: hypothetical protein; A1122_15565; phage(gi401817601)  1e-16  Click
26 complement(3377983..3378567)  PHAGE_Shigel_EP23: putative tail protein; A1122_15570; phage(gi371496282)  2e-27  Click
27 complement(3378569..3378919)  PHAGE_Cronob_phiES15: putative structural protein 2; A1122_15575; phage(gi401817599)  5e-33  Click
28 complement(3378921..3379175)  PHAGE_Salmon_SSU5: hypothetical protein; A1122_15580; phage(gi410491538)  8e-20  Click
29 complement(3379172..3379654)  PHAGE_Cronob_phiES15: hypothetical protein; A1122_15585; phage(gi401817598)  2e-23  Click
30 complement(3379702..3380907)  PHAGE_Acinet_Bphi_B1251: major capsid protein; A1122_15590; phage(gi423262007)  1e-113  Click
31 complement(3380921..3381694)  PHAGE_Xantho_Xp15: putative phage structural protein; A1122_15595; phage(gi66392059)  1e-19  Click
32 complement(3381816..3382928)  PHAGE_Cronob_phiES15: hypothetical protein; A1122_15600; phage(gi401817594)  3e-123  Click
33 complement(3382929..3383570)  PHAGE_Burkho_KL1: portal protein; A1122_15605; phage(gi399528722)  1e-34  Click
34 complement(3383589..3384317)  PHAGE_Burkho_KL1: portal protein; A1122_15610; phage(gi399528722)  2e-35  Click
35 complement(3384317..3385291)  PHAGE_Cronob_phiES15: terminase large subunit; A1122_15615; phage(gi401817592)  5e-144  Click
36 complement(3385296..3386504)  PROPHAGE_Escher_CFT073: transposase; A1122_15620; phage(gi26246249)  0.0  Click
37 complement(3386552..3387130)  PHAGE_Cronob_phiES15: terminase large subunit; A1122_15625; phage(gi401817592)  5e-65  Click
38 complement(3387140..3387589)  PHAGE_Salmon_vB_SosS_Oslo: hypothetical protein; A1122_15630; phage(gi399528759)  4e-51  Click
39 complement(3387620..3388255)  PHAGE_Pectob_ZF40: putative transposase; A1122_15635; phage(gi422936679)  3e-87  Click
40 complement(3388712..3389425)  PHAGE_Cronob_ENT47670: phage antirepressor protein; A1122_15640; phage(gi431810509)  6e-50  Click
41 complement(3389697..3389855)  hypothetical protein; A1122_15645  N/A  Click
42 complement(3389971..3390429)  PHAGE_Entero_cdtI: lysin; A1122_15650; phage(gi148609441)  2e-24  Click
43 complement(3390414..3390926)  PHAGE_Cronob_phiES15: putative endolysin; A1122_15655; phage(gi401817587)  2e-51  Click
44 3390874..3390996  hypothetical protein; A1122_15660  N/A  Click
45 complement(3390957..3391154)  PHAGE_Salmon_vB_SosS_Oslo: class II holin; A1122_15665; phage(gi399528833)  6e-14  Click
46 3391400..3391675  hypothetical protein; A1122_15670  N/A  Click
47 complement(3391672..3391881)  hypothetical protein; A1122_15675  N/A  Click
48 complement(3392305..3392868)  PHAGE_Salmon_SPN3UB: hypothetical protein; A1122_15680; phage(gi423262398)  1e-29  Click
49 complement(3393139..3393528)  PHAGE_Entero_2008: antitermination protein Q; A1122_15685; phage(gi209427762)  2e-44  Click
50 complement(3393529..3394134)  PHAGE_Salmon_ST160: NinG; A1122_15690; phage(gi318065938)  4e-43  Click
51 complement(3394208..3394654)  PHAGE_Cronob_ENT47670: putative ninB protein; A1122_15695; phage(gi431810524)  5e-47  Click
52 3394681..3395379  PHAGE_Pseudo_F116: DNA adenine methyltransferase; A1122_15700; phage(gi56692911)  3e-53  Click
53 3395679..3395939  PHAGE_Gifsy_2: bacteriophage excisionase; A1122_15705; phage(gi169257269)  4e-19  Click
54 complement(3396107..3396889)  PROPHAGE_Escher_CFT073: transposase/IS protein; A1122_15710; phage(gi26248359)  3e-143  Click
55 complement(3396886..3397908)  PROPHAGE_Escher_CFT073: transposase; A1122_15715; phage(gi26248360)  0.0  Click
56 3397773..3397784  attR    TTGGCGGCTCAG  N/A  Click
57 3397978..3399216  PHAGE_Salmon_1: putative bacteriophage integrase; A1122_15720; phage(gi169257156)  1e-125  Click
Region 3, total : 21 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(3533391..3533597)  PHAGE_Entero_Sf6: putative transposase OrfB; A1122_16420; phage(gi41057343)  1e-22  Click
2 3534369..3534380  attL    TTTTTACATACA  N/A  Click
3 3534461..3535030  hypothetical protein; A1122_16425  N/A  Click
4 complement(3535448..3535786)  PROPHAGE_Escher_CFT073: transposase; A1122_16430; phage(gi26246249)  2e-56  Click
5 complement(3535786..3536646)  PROPHAGE_Escher_CFT073: transposase; A1122_16435; phage(gi26246249)  3e-139  Click
6 complement(3536694..3537770)  hypothetical protein; A1122_16440  N/A  Click
7 complement(3537836..3538126)  PHAGE_Burkho_phiE202: gp7, pANL12; A1122_16445; phage(gi134288781)  3e-07  Click
8 complement(3538107..3538379)  PHAGE_Burkho_phiE202: gp6, pANL56; A1122_16450; phage(gi134288760)  2e-12  Click
9 3538410..3538769  PHAGE_Entero_PsP3: gp15; A1122_16455; phage(gi41057367)  9e-19  Click
10 3538766..3539065  PHAGE_Entero_PsP3: gp16; A1122_16460; phage(gi41057368)  8e-25  Click
11 3539082..3539369  PHAGE_Aeromo_vB_AsaM_56: putative tail-fiber protein; A1122_16465; phage(gi422937565)  7e-06  Click
12 3539804..3540019  hypothetical protein; A1122_16470  N/A  Click
13 3540016..3540321  hypothetical protein; A1122_16475  N/A  Click
14 3540302..3540580  hypothetical protein; A1122_16480  N/A  Click
15 3540996..3541415  hypothetical protein; A1122_16490  N/A  Click
16 3541487..3542446  PHAGE_Lactob_phiAT3: putative transposase B; A1122_16495; phage(gi48697274)  6e-15  Click
17 3542666..3543010  hypothetical protein; A1122_16500  N/A  Click
18 complement(3543227..3543409)  hypothetical protein; A1122_16505  N/A  Click
19 complement(3543601..3543774)  hypothetical protein; A1122_16510  N/A  Click
20 complement(3544534..3544761)  PHAGE_Salmon_SPN9CC: replicative DNA helicase; A1122_16515; phage(gi389060513)  2e-14  Click
21 3544872..3545387  PHAGE_Pectob_ZF40: putative integrase; A1122_16520; phage(gi422936642)  6e-63  Click
22 3545320..3545544  PHAGE_Pectob_ZF40: putative integrase; A1122_16525; phage(gi422936642)  3e-20  Click
23 3560222..3560233  attR    TTTTTACATACA  N/A  Click
Region 4, total : 17 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 4320875..4321165  PHAGE_Salmon_SPN3UB: hypothetical protein; A1122_20085; phage(gi423262443)  7e-16  Click
2 4321211..4321828  ATP-binding protein; A1122_20090  N/A  Click
3 4321833..4322027  PHAGE_Entero_SfV: hypothetical protein SfVp10; A1122_20095; phage(gi19549000)  1e-06  Click
4 4322024..4323532  PHAGE_Entero_SfV: tail sheath protein; A1122_20100; phage(gi19549001)  4e-107  Click
5 4323554..4323922  PHAGE_Entero_SfV: hypothetical protein SfVp12; A1122_20105; phage(gi19549002)  2e-10  Click
6 4323924..4324223  hypothetical protein; A1122_20110  N/A  Click
7 4324344..4325837  putative bacteriophage coat protein; A1122_20115  N/A  Click
8 4325873..4326079  hypothetical protein; A1122_20120  N/A  Click
9 4326104..4327510  PHAGE_Entero_SfV: tail/DNA circulation protein; A1122_20125; phage(gi19549005)  3e-20  Click
10 4327507..4328562  PHAGE_Entero_SfV: tail protein; A1122_20130; phage(gi19549006)  3e-32  Click
11 4328578..4329174  PHAGE_Entero_SfV: tail protein; A1122_20135; phage(gi19549007)  2e-17  Click
12 4329171..4329626  PHAGE_Entero_SfV: tail protein; A1122_20140; phage(gi19549008)  5e-14  Click
13 4329630..4330766  PHAGE_Entero_SfV: tail protein; A1122_20145; phage(gi19549009)  8e-33  Click
14 4330763..4331023  PHAGE_Salmon_ST64B: putative tail protein; A1122_20150; phage(gi23505467)  5e-05  Click
15 4331020..4331367  PHAGE_Entero_SfV: tail protein; A1122_20155; phage(gi19548988)  7e-11  Click
16 4331464..4332243  PHAGE_Entero_HK97: tail fiber; A1122_20160; phage(gi9634179)  8e-54  Click
17 4332541..4333281  PHAGE_Acanth_moumouvirus: putative glucosamine-fructose-6-phosphate aminotransferase; A1122_20165; phage(gi441432573)  3e-05  Click