| Definition | Bordetella pertussis CS, complete genome. |
|---|---|
| Accession | CP002695 |
| Length | 4,124,236 |
Legend
| Hits against Virus and prophage DB | |
| Hits against Bacterial DB or GenBank file |
Region 1, total : 10 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 37926..40064 | PHAGE_Bovine_5: large tegument protein; BPTD_0033; phage(gi296316024) | 7e-05 | Click |
| 2 | 40061..40600 | PHAGE_Rachip_MNPV: hypothetical protein; BPTD_0034; phage(gi23577910) | 7e-05 | Click |
| 3 | 40604..41332 | acyltransferase; BPTD_0035 | N/A | Click |
| 4 | 41319..42212 | hypothetical protein; BPTD_0036 | N/A | Click |
| 5 | 42283..42678 | lactoylglutathione lyase; BPTD_0037 | N/A | Click |
| 6 | 42688..43218 | PHAGE_Synech_S_SSM7: RIIA-RIIB membrane-associated protein; BPTD_0038; phage(gi326783953) | 1e-12 | Click |
| 7 | 43664..44614 | PHAGE_Spirop_3x: hypothetical protein SkV1VCR23x_ORF3; BPTD_0040; phage(gi160688404) | 8e-09 | Click |
| 8 | 45201..45749 | hypothetical protein; BPTD_0042 | N/A | Click |
| 9 | complement(45721..45957) | PHAGE_Pseudo_F10: Conserved hypothetical protein; putative transcriptional regulator, LuxR family; BPTD_0043; phage(gi148912803) | 2e-06 | Click |
| 10 | 46085..46978 | PHAGE_Lactob_KC5a: putative minor tail protein; BPTD_0044; phage(gi90592623) | 7e-05 | Click |
Region 2, total : 26 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 518168..518184 | attL CGCACGTGCACGGCCAC | N/A | Click |
| 2 | 518442..518455 | attL GCGCATCGCGCCCG | N/A | Click |
| 3 | complement(532804..533754) | PHAGE_Spirop_3x: hypothetical protein SkV1VCR23x_ORF3; BPTD_0508; phage(gi160688404) | 2e-09 | Click |
| 4 | 534212..535135 | PHAGE_Burkho_phi1026b: gp58; BPTD_0510; phage(gi38707948) | 1e-12 | Click |
| 5 | complement(535144..535542) | hypothetical protein; BPTD_0511 | N/A | Click |
| 6 | 535784..537754 | PHAGE_Salmon_SSU5: putative phage tail fiber protein; BPTD_0512; phage(gi410491431) | 3e-06 | Click |
| 7 | complement(537780..539057) | PHAGE_Ectoca_1: EsV-1-186; BPTD_0513; phage(gi13242656) | 1e-05 | Click |
| 8 | 539241..540230 | PHAGE_Mannhe_phiMHaA1: integrase; BPTD_0514; phage(gi109289985) | 4e-49 | Click |
| 9 | complement(540227..540427) | hypothetical protein; BPTD_0515 | N/A | Click |
| 10 | complement(540428..540547) | hypothetical protein; BPTD_0516 | N/A | Click |
| 11 | complement(540540..540881) | PHAGE_Burkho_BcepC6B: hypothetical protein BcepC6B_gp26; BPTD_0517; phage(gi48697216) | 2e-09 | Click |
| 12 | complement(540892..542079) | PHAGE_Acinet_Ac42: hypothetical protein; BPTD_0518; phage(gi311992508) | 4e-08 | Click |
| 13 | complement(542113..542640) | hypothetical protein; BPTD_0519 | N/A | Click |
| 14 | complement(542698..543345) | PHAGE_Aeromo_vB_AsaM_56: putative exonuclease; BPTD_0520; phage(gi422937501) | 1e-20 | Click |
| 15 | complement(543342..544328) | PHAGE_Aeromo_vB_AsaM_56: putative RecT recombination protein; BPTD_0521; phage(gi422937502) | 3e-69 | Click |
| 16 | complement(544332..544514) | putative membrane protein; BPTD_0522 | N/A | Click |
| 17 | complement(544511..544888) | hypothetical protein; BPTD_0523 | N/A | Click |
| 18 | complement(545122..545589) | PHAGE_Burkho_Bcep176: gp36; BPTD_0525; phage(gi77864661) | 6e-48 | Click |
| 19 | complement(546674..546916) | hypothetical protein; BPTD_0526 | N/A | Click |
| 20 | complement(547083..547724) | hypothetical protein; BPTD_0527 | N/A | Click |
| 21 | complement(547735..548685) | PHAGE_Spirop_3x: hypothetical protein SkV1VCR23x_ORF3; BPTD_0528; phage(gi160688404) | 2e-09 | Click |
| 22 | complement(548795..549190) | hypothetical protein; BPTD_0529 | N/A | Click |
| 23 | 549360..550061 | glutathione S-transferase; BPTD_0530 | N/A | Click |
| 24 | 550325..551185 | PHAGE_Cronob_vB_CsaM_GAP32: hypothetical protein; BPTD_0531; phage(gi414086941) | 5e-68 | Click |
| 25 | complement(551260..551595) | hypothetical protein; BPTD_0532 | N/A | Click |
| 26 | complement(551736..552881) | putative metal-activated pyridoxal enzyme; BPTD_0533 | N/A | Click |
| 27 | complement(552909..553568) | haloacid dehalogenase; BPTD_0534 | N/A | Click |
| 28 | 554317..554330 | attR GCGCATCGCGCCCG | N/A | Click |
| 29 | 554573..554779 | putative integrase; BPTD_0536 | N/A | Click |
| 30 | 555466..555482 | attR CGCACGTGCACGGCCAC | N/A | Click |
Region 3, total : 25 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 3613304..3613975 | PHAGE_Pseudo_F116: hypothetical protein F116p67; BPTD_3308; phage(gi56692976) | 4e-35 | Click |
| 2 | 3614304..3614525 | phage-like hypothetical protein; BPTD_3309 | N/A | Click |
| 3 | 3614525..3614806 | hypothetical protein; BPTD_3310 | N/A | Click |
| 4 | complement(3614803..3615318) | PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; BPTD_3311; phage(gi16765210) | 8e-15 | Click |
| 5 | complement(3615318..3615869) | PHAGE_Entero_RTP: putative endolysin; BPTD_3312; phage(gi81343992) | 3e-11 | Click |
| 6 | complement(3615848..3616090) | hypothetical protein; BPTD_3313 | N/A | Click |
| 7 | complement(3616095..3616907) | hypothetical protein; BPTD_3314 | N/A | Click |
| 8 | complement(3616907..3617167) | PHAGE_Rhodob_RcapNL: tail fiber protein; BPTD_3315; phage(gi461474986) | 2e-11 | Click |
| 9 | complement(3617389..3617805) | hypothetical protein; BPTD_3316 | N/A | Click |
| 10 | complement(3617810..3621766) | PHAGE_Burkho_phiE125: putative tail tip fiber protein; BPTD_3317; phage(gi17975182) | 2e-44 | Click |
| 11 | complement(3621759..3622148) | PHAGE_Burkho_BcepGomr: BcepGomrgp21; BPTD_3318; phage(gi146329933) | 2e-29 | Click |
| 12 | complement(3622145..3622678) | PHAGE_Burkho_BcepGomr: BcepGomrgp20; BPTD_3319; phage(gi146329932) | 3e-42 | Click |
| 13 | complement(3622746..3623105) | PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; BPTD_3320; phage(gi374531665) | 3e-05 | Click |
| 14 | complement(3623115..3625727) | PHAGE_Pseudo_MP29: putative tail component protein; BPTD_3321; phage(gi215480016) | 2e-83 | Click |
| 15 | complement(3625753..3626043) | PHAGE_Cronob_phiES15: hypothetical protein; BPTD_3322; phage(gi401817604) | 4e-09 | Click |
| 16 | complement(3626061..3626390) | PHAGE_Cronob_phiES15: hypothetical protein; BPTD_3323; phage(gi401817603) | 2e-13 | Click |
| 17 | complement(3626400..3626918) | PHAGE_Cronob_phiES15: putative major tail protein; BPTD_3324; phage(gi401817602) | 7e-22 | Click |
| 18 | complement(3627173..3627673) | PHAGE_Xantho_phiL7: P07; BPTD_3325; phage(gi238695594) | 3e-30 | Click |
| 19 | complement(3627681..3628103) | PHAGE_Cronob_phiES15: hypothetical protein; BPTD_3326; phage(gi401817601) | 3e-06 | Click |
| 20 | complement(3628100..3628498) | PHAGE_Cronob_phiES15: hypothetical protein; BPTD_3327; phage(gi401817600) | 3e-18 | Click |
| 21 | complement(3628495..3628890) | PHAGE_Cyanop_KBS_S_2A: hypothetical protein; BPTD_3328; phage(gi472341510) | 1e-08 | Click |
| 22 | complement(3628890..3629090) | hypothetical protein; BPTD_3329 | N/A | Click |
| 23 | complement(3629092..3629622) | PHAGE_Pseudo_YuA: structural phage protein; BPTD_3330; phage(gi162135145) | 2e-15 | Click |
| 24 | complement(3629637..3629888) | hypothetical protein; BPTD_3331 | N/A | Click |
| 25 | complement(3631942..3632544) | PHAGE_Cyanop_KBS_S_2A: hypothetical protein; BPTD_3334; phage(gi472341499) | 2e-05 | Click |
Region 4, total : 5 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(3632915..3633970) | PHAGE_Pseudo_MP1412: head morphogenesis/minor structural protein; BPTD_3336; phage(gi399529016) | 3e-56 | Click |
| 2 | complement(3633999..3635417) | PHAGE_Vibrio_vB_VpaS_MAR10: portal protein; BPTD_3337; phage(gi428782116) | 9e-56 | Click |
| 3 | complement(3635420..3636697) | PHAGE_Pseudo_H105/1: phage terminase large subunit; BPTD_3338; phage(gi327198525) | 1e-110 | Click |
| 4 | complement(3636684..3637133) | PHAGE_Riemer_RAP44: hypothetical protein; BPTD_3339; phage(gi418489899) | 2e-22 | Click |
| 5 | complement(3637809..3638759) | PHAGE_Spirop_3x: hypothetical protein SkV1VCR23x_ORF3; BPTD_3340; phage(gi160688404) | 2e-09 | Click |