| Definition | Lactobacillus casei LC2W, complete genome. |
|---|---|
| Accession | CP002616 |
| Length | 3,039,042 |
Legend
| Hits against Virus and prophage DB | |
| Hits against Bacterial DB or GenBank file |
Region 1, total : 58 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 546007..547449 | Integrase core domain protein; LC2W_0535 | N/A | Click |
| 2 | complement(547559..548062) | Conserved protein; LC2W_0536 | N/A | Click |
| 3 | complement(548241..549134) | PHAGE_Burkho_phi1026b: gp58; LC2W_0537; phage(gi38707948) | 8e-06 | Click |
| 4 | 549568..550155 | Xylose isomerase domain protein TIM barrel; LC2W_0538 | N/A | Click |
| 5 | 550172..550672 | Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; LC2W_0539 | N/A | Click |
| 6 | 550674..551006 | hypothetical protein; LC2W_0540 | N/A | Click |
| 7 | complement(550981..551097) | hypothetical protein; LC2W_0541 | N/A | Click |
| 8 | 551103..551993 | Shikimate dehydrogenase; LC2W_0542 | N/A | Click |
| 9 | 552027..553244 | Putative transporter; MFS superfamily; LC2W_0543 | N/A | Click |
| 10 | 553263..554162 | Shikimate dehydrogenase; LC2W_0544 | N/A | Click |
| 11 | 554134..554253 | hypothetical protein; LC2W_0545 | N/A | Click |
| 12 | 554607..555422 | Homoserine O-succinyltransferase; LC2W_0546 | N/A | Click |
| 13 | 555456..556385 | PHAGE_Lactoc_P087: putative cysteine synthase; LC2W_0547; phage(gi229605000) | 9e-90 | Click |
| 14 | complement(556579..557124) | Hydrophobic protein; LC2W_0548 | N/A | Click |
| 15 | 557246..557317 | tRNA | N/A | Click |
| 16 | complement(557445..558614) | PHAGE_Lactob_phiAT3: putative integrase; LC2W_0549; phage(gi48697280) | 0.0 | Click |
| 17 | complement(558727..558987) | PHAGE_Lactob_phiAT3: hypothetical protein phiAT3gORF33; LC2W_0550; phage(gi48697293) | 2e-10 | Click |
| 18 | 559077..559697 | hypothetical protein; LC2W_0551 | N/A | Click |
| 19 | complement(559681..559917) | hypothetical protein; LC2W_0552 | N/A | Click |
| 20 | complement(559918..560025) | hypothetical protein; LC2W_0553 | N/A | Click |
| 21 | complement(560110..560817) | PHAGE_Lister_A118: gp34; LC2W_0554; phage(gi16798817) | 5e-07 | Click |
| 22 | complement(560976..561398) | PHAGE_Lactob_Lj928: hypothetical protein Ljo_1458; LC2W_0555; phage(gi41179295) | 3e-12 | Click |
| 23 | complement(561391..561744) | PHAGE_Entero_phiFL3A: CI phage repressor protein; LC2W_0556; phage(gi281416216) | 1e-17 | Click |
| 24 | 561988..562236 | hypothetical protein; LC2W_0557 | N/A | Click |
| 25 | 562278..562478 | hypothetical protein; LC2W_0558 | N/A | Click |
| 26 | complement(562449..563282) | hypothetical protein; LC2W_0559 | N/A | Click |
| 27 | 563343..564101 | PHAGE_Lactoc_bIL285: anti-repressor; LC2W_0560; phage(gi13095686) | 7e-42 | Click |
| 28 | 564102..564281 | hypothetical protein; LC2W_0561 | N/A | Click |
| 29 | complement(564274..564525) | hypothetical protein; LC2W_0562 | N/A | Click |
| 30 | 564591..564947 | PHAGE_Lactob_phiAT3: hypothetical protein phiAT3gORF25; LC2W_0563; phage(gi48697285) | 1e-63 | Click |
| 31 | 565032..565235 | hypothetical protein; LC2W_0564 | N/A | Click |
| 32 | complement(565218..565763) | hypothetical protein; LC2W_0565 | N/A | Click |
| 33 | complement(565825..565992) | hypothetical protein; LC2W_0566 | N/A | Click |
| 34 | 565944..566258 | hypothetical protein; LC2W_0567 | N/A | Click |
| 35 | 566251..566997 | PHAGE_Lactob_c5: putative DNA replication protein; LC2W_0568; phage(gi418488187) | 1e-29 | Click |
| 36 | 567012..567836 | PHAGE_Lactoc_r1t: putative replication protein DnaC; LC2W_0569; phage(gi23455731) | 4e-15 | Click |
| 37 | 567836..568354 | DNA polymerase III alpha subunit; LC2W_0570 | N/A | Click |
| 38 | 568401..568823 | PHAGE_Strept_phiNJ2: hypothetical protein; LC2W_0571; phage(gi414090240) | 3e-18 | Click |
| 39 | 568825..569562 | PHAGE_Clostr_phiCD38_2: hypothetical protein; LC2W_0572; phage(gi333798150) | 3e-39 | Click |
| 40 | 569574..569861 | PHAGE_Lactob_A2: hypothetical protein A2p52; LC2W_0573; phage(gi22296571) | 3e-40 | Click |
| 41 | 569931..570263 | hypothetical protein; LC2W_0574 | N/A | Click |
| 42 | 570778..571221 | PHAGE_Lactob_phiAT3: hypothetical protein phiAT3gORF47; LC2W_0575; phage(gi48697307) | 6e-47 | Click |
| 43 | 571222..571233 | attL TGCAACAAAAAA | N/A | Click |
| 44 | 571735..572388 | hypothetical protein; LC2W_0576 | N/A | Click |
| 45 | 572639..573637 | PHAGE_Staphy_phiPV83: transposase; LC2W_0577; phage(gi9635740) | 1e-57 | Click |
| 46 | complement(573833..574051) | PHAGE_Lactob_LF1: hypothetical protein; LC2W_0578; phage(gi418489439) | 2e-20 | Click |
| 47 | 574100..574111 | attR TGCAACAAAAAA | N/A | Click |
| 48 | 574474..575304 | PHAGE_Lactob_phiAT3: hypothetical protein phiAT3gORF50; LC2W_0579; phage(gi48697310) | 8e-101 | Click |
| 49 | 575298..575597 | PHAGE_Lactob_phiAT3: hypothetical protein phiAT3gORF50; LC2W_0580; phage(gi48697310) | 2e-54 | Click |
| 50 | 575584..575919 | PHAGE_Lactob_phiAT3: hypothetical protein phiAT3gORF52; LC2W_0581; phage(gi48697312) | 2e-44 | Click |
| 51 | 576060..576371 | PHAGE_Lactob_phiAT3: putative transposase A; LC2W_0582; phage(gi48697273) | 5e-08 | Click |
| 52 | 576401..577129 | PROPHAGE_Ralsto_GMI1000: ISRSO11-transposase ORFA protein; LC2W_0583; phage(gi17546156) | 7e-07 | Click |
| 53 | 577126..578004 | PROPHAGE_Escher_CFT073: transposase insF; LC2W_0584; phage(gi26249410) | 4e-24 | Click |
| 54 | 578083..578913 | PHAGE_Lactob_phiAT3: putative transposase B; LC2W_0585; phage(gi48697274) | 4e-28 | Click |
| 55 | 579228..579386 | hypothetical protein; LC2W_0586 | N/A | Click |
| 56 | 579475..579921 | hypothetical protein; LC2W_0587 | N/A | Click |
| 57 | 579933..580199 | hypothetical protein; LC2W_0588 | N/A | Click |
| 58 | 580218..580394 | hypothetical protein; LC2W_0589 | N/A | Click |
| 59 | 580396..580623 | hypothetical protein; LC2W_0590 | N/A | Click |
| 60 | 580666..581907 | hypothetical protein; LC2W_0591 | N/A | Click |
| 61 | 581885..583435 | PHAGE_Achole_L2: envelope protein; LC2W_0592; phage(gi9626524) | 1e-11 | Click |
Region 2, total : 54 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 923273..923284 | attL GTTTCTAACCGC | N/A | Click |
| 2 | 923395..923406 | attL TCCGGTTTCTAA | N/A | Click |
| 3 | complement(930899..932038) | PHAGE_Lactob_Lrm1: integrase; LC2W_0941; phage(gi195661224) | 7e-82 | Click |
| 4 | complement(932156..933223) | Abi-like protein; LC2W_0942 | N/A | Click |
| 5 | complement(933368..933799) | hypothetical protein; LC2W_0943 | N/A | Click |
| 6 | complement(933869..934351) | hypothetical protein; LC2W_0944 | N/A | Click |
| 7 | complement(934355..934648) | hypothetical protein; LC2W_0945 | N/A | Click |
| 8 | complement(934832..935692) | hypothetical protein; LC2W_0946 | N/A | Click |
| 9 | complement(935679..936047) | PHAGE_Lister_2389: Rep protein; LC2W_0947; phage(gi17488532) | 5e-05 | Click |
| 10 | 936303..936500 | hypothetical protein; LC2W_0948 | N/A | Click |
| 11 | 936497..937219 | PHAGE_Lactob_phiadh: hypothetical protein phiadhp07; LC2W_0949; phage(gi9633007) | 4e-38 | Click |
| 12 | 937548..937772 | PHAGE_Lactob_phiAT3: hypothetical protein phiAT3gORF25; LC2W_0950; phage(gi48697285) | 8e-06 | Click |
| 13 | 937772..937864 | hypothetical protein; LC2W_0951 | N/A | Click |
| 14 | 937861..938073 | hypothetical protein; LC2W_0952 | N/A | Click |
| 15 | 938083..938958 | PHAGE_Entero_phiFL1A: endonuclease YqaJ superfamily; LC2W_0953; phage(gi281416339) | 3e-62 | Click |
| 16 | 938961..939155 | hypothetical protein; LC2W_0954 | N/A | Click |
| 17 | 939155..940042 | PHAGE_Lister_A006: gp42; LC2W_0955; phage(gi157325459) | 1e-61 | Click |
| 18 | 940051..940296 | PHAGE_Lactoc_lato: hypothetical protein P335p08; LC2W_0956; phage(gi30089869) | 4e-14 | Click |
| 19 | 940301..941146 | PHAGE_Lister_A118: gp49; LC2W_0957; phage(gi16798836) | 1e-48 | Click |
| 20 | 941184..942005 | PHAGE_Lactoc_lato: putative DnaC protein; LC2W_0958; phage(gi30089873) | 4e-18 | Click |
| 21 | 942002..942301 | hypothetical protein; LC2W_0959 | N/A | Click |
| 22 | 942264..942548 | PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; LC2W_0960; phage(gi399528947) | 1e-13 | Click |
| 23 | 942535..942864 | hypothetical protein; LC2W_0961 | N/A | Click |
| 24 | 942857..943435 | PHAGE_Bacill_phBC6A51: hypothetical protein BC1875; LC2W_0962; phage(gi31415769) | 3e-19 | Click |
| 25 | 943449..943871 | PHAGE_Lactob_Nu: putative Holliday junction resolvase; LC2W_0963; phage(gi78000012) | 6e-43 | Click |
| 26 | 943876..944139 | hypothetical protein; LC2W_0964 | N/A | Click |
| 27 | 944163..944486 | hypothetical protein; LC2W_0965 | N/A | Click |
| 28 | 944565..945014 | PHAGE_Bacill_WBeta: conserved phage protein; LC2W_0966; phage(gi85701424) | 1e-23 | Click |
| 29 | 945239..945619 | PHAGE_Clostr_phiMMP04: HNH endonuclease; LC2W_0967; phage(gi414090491) | 1e-14 | Click |
| 30 | 945677..946063 | hypothetical protein; LC2W_0968 | N/A | Click |
| 31 | 946066..947796 | PHAGE_Clostr_phiMMP04: terminase; LC2W_0969; phage(gi414090443) | 8e-126 | Click |
| 32 | 947815..949050 | PHAGE_Clostr_phiMMP04: phage portal protein; LC2W_0970; phage(gi414090444) | 6e-115 | Click |
| 33 | 949028..949735 | PHAGE_Lactoc_bIL286: protease; LC2W_0971; phage(gi13095787) | 5e-45 | Click |
| 34 | 949740..950969 | PHAGE_Clostr_phiMMP04: major capsid protein; LC2W_0972; phage(gi414090446) | 1e-71 | Click |
| 35 | 951043..951291 | hypothetical protein; LC2W_0973 | N/A | Click |
| 36 | 951305..951631 | PHAGE_Bacill_phBC6A52: hypothetical protein BC2588; LC2W_0974; phage(gi31415853) | 3e-10 | Click |
| 37 | 951570..951908 | PHAGE_Bacill_phBC6A52: hypothetical protein BC2589; LC2W_0975; phage(gi31415854) | 3e-10 | Click |
| 38 | 951892..952221 | PHAGE_Bacill_phBC6A52: hypothetical protein BC2590; LC2W_0976; phage(gi31415855) | 3e-11 | Click |
| 39 | 952211..952594 | PHAGE_Bacill_phBC6A52: hypothetical protein BC2591; LC2W_0977; phage(gi31415856) | 2e-11 | Click |
| 40 | 952606..953253 | PHAGE_Bacill_phBC6A52: hypothetical protein BC2592; LC2W_0978; phage(gi31415857) | 6e-12 | Click |
| 41 | 953330..953695 | PHAGE_Bacill_phBC6A52: hypothetical protein BC2593; LC2W_0979; phage(gi31415858) | 9e-21 | Click |
| 42 | 953776..953937 | hypothetical protein; LC2W_0980 | N/A | Click |
| 43 | 953957..956929 | PHAGE_Bacill_phBC6A52: hypothetical protein BC2594; LC2W_0981; phage(gi31415859) | 2e-78 | Click |
| 44 | 956936..957631 | PHAGE_Bacill_phBC6A52: Gp13 protein; LC2W_0982; phage(gi31415860) | 5e-20 | Click |
| 45 | 957628..962034 | PHAGE_Bacill_phBC6A52: endopeptidase; LC2W_0983; phage(gi31415861) | 2e-67 | Click |
| 46 | 962063..962488 | PHAGE_Lactob_LP65: hypothetical protein LP65_gp096; LC2W_0984; phage(gi56693144) | 5e-10 | Click |
| 47 | 962491..962760 | PHAGE_Lactoc_bIL285: Orf59; LC2W_0985; phage(gi13095739) | 3e-13 | Click |
| 48 | 962806..963099 | PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp17; LC2W_0986; phage(gi195661217) | 3e-43 | Click |
| 49 | 963089..963523 | PHAGE_Lactob_A2: holin; LC2W_0987; phage(gi22296539) | 2e-55 | Click |
| 50 | 963523..963711 | hypothetical protein; LC2W_0988 | N/A | Click |
| 51 | 963698..964672 | PHAGE_Lactob_A2: lysin; LC2W_0989; phage(gi22296540) | 2e-63 | Click |
| 52 | 965194..966705 | Glycosyl transferase group 1; LC2W_0990 | N/A | Click |
| 53 | 966733..968292 | Poly alpha-glucosyltransferase; LC2W_0991 | N/A | Click |
| 54 | 968389..968862 | PHAGE_Canary_virus: CNPV087 putative glutathione peroxidase; LC2W_0992; phage(gi40556025) | 2e-20 | Click |
| 55 | 969239..969250 | attR TCCGGTTTCTAA | N/A | Click |
| 56 | 969329..970534 | Aminotransferase, class I/II; LC2W_0993 | N/A | Click |
| 57 | complement(970551..971549) | PHAGE_Staphy_phiPV83: transposase; LC2W_0994; phage(gi9635740) | 4e-52 | Click |
| 58 | 984910..984921 | attR GTTTCTAACCGC | N/A | Click |
Region 3, total : 50 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1044589..1045179 | PHAGE_Strept_1: head maturation protease; LC2W_1066; phage(gi28876177) | 4e-13 | Click |
| 2 | 1045283..1045354 | tRNA | N/A | Click |
| 3 | 1045339..1045361 | attL ACTCCCGGGCTGCGCAGAAACCC | N/A | Click |
| 4 | complement(1045584..1046735) | PHAGE_Lactob_Lrm1: integrase; LC2W_1067; phage(gi195661224) | 2e-61 | Click |
| 5 | complement(1046846..1047607) | hypothetical protein; LC2W_1068 | N/A | Click |
| 6 | 1047626..1047856 | hypothetical protein; LC2W_1069 | N/A | Click |
| 7 | complement(1048112..1048891) | PHAGE_Mycoba_Myrna: gp260; LC2W_1070; phage(gi203454821) | 6e-06 | Click |
| 8 | complement(1048963..1049367) | PHAGE_Lactob_LF1: Lj965 prophage repressor-like protein; LC2W_1071; phage(gi418489418) | 5e-16 | Click |
| 9 | complement(1049364..1049690) | PHAGE_Entero_phiFL3A: CI phage repressor protein; LC2W_1072; phage(gi281416216) | 2e-23 | Click |
| 10 | 1049947..1050159 | hypothetical protein; LC2W_1073 | N/A | Click |
| 11 | 1050162..1050935 | PHAGE_Brocho_BL3: gp34; LC2W_1074; phage(gi327409426) | 3e-56 | Click |
| 12 | 1050967..1051290 | PHAGE_Lactob_A2: hypothetical protein A2p30; LC2W_1075; phage(gi22296549) | 4e-07 | Click |
| 13 | 1051290..1051421 | hypothetical protein; LC2W_1076 | N/A | Click |
| 14 | 1051426..1051569 | hypothetical protein; LC2W_1077 | N/A | Click |
| 15 | complement(1051558..1051869) | PHAGE_Clostr_phiC2: hypothetical protein phiC2p84; LC2W_1078; phage(gi134287416) | 7e-06 | Click |
| 16 | 1051930..1052121 | PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp31; LC2W_1079; phage(gi195661231) | 3e-10 | Click |
| 17 | 1052135..1052374 | hypothetical protein; LC2W_1080 | N/A | Click |
| 18 | 1052379..1052873 | PHAGE_Lactob_Nu: hypothetical protein; LC2W_1081; phage(gi78000004) | 5e-30 | Click |
| 19 | 1052885..1053115 | hypothetical protein; LC2W_1082 | N/A | Click |
| 20 | 1053115..1054482 | PHAGE_Strept_O1205: putative helicase; LC2W_1083; phage(gi23455858) | 4e-116 | Click |
| 21 | 1054484..1055224 | PHAGE_Strept_PH15: putative NTP-binding protein; LC2W_1084; phage(gi190151434) | 3e-65 | Click |
| 22 | 1055227..1055736 | PHAGE_Strept_PH15: hypothetical protein phiPH15_gp20; LC2W_1085; phage(gi190151435) | 1e-08 | Click |
| 23 | 1055803..1056600 | PHAGE_Strept_5: hypothetical protein SpyM3_1341; LC2W_1086; phage(gi28876423) | 4e-59 | Click |
| 24 | 1056605..1057840 | PHAGE_Lactoc_bIL312: helicase; LC2W_1087; phage(gi13095906) | 2e-88 | Click |
| 25 | 1058115..1058429 | PHAGE_Lactob_A2: hypothetical protein A2p40; LC2W_1088; phage(gi22296559) | 2e-38 | Click |
| 26 | 1058436..1058720 | PHAGE_Staphy_vB_SepiS_phiIPLA5: hypothetical protein; LC2W_1089; phage(gi399528947) | 2e-13 | Click |
| 27 | 1058707..1059036 | hypothetical protein; LC2W_1090 | N/A | Click |
| 28 | 1059029..1059616 | PHAGE_Bacill_phBC6A51: hypothetical protein BC1875; LC2W_1091; phage(gi31415769) | 4e-19 | Click |
| 29 | 1059603..1059857 | hypothetical protein; LC2W_1092 | N/A | Click |
| 30 | 1059854..1060258 | PHAGE_Staphy_TEM123: mobile-element-associated regulatory protein; LC2W_1093; phage(gi388570351) | 9e-14 | Click |
| 31 | 1060423..1060803 | PHAGE_Clostr_phiMMP04: HNH endonuclease; LC2W_1094; phage(gi414090491) | 4e-15 | Click |
| 32 | 1060860..1061246 | hypothetical protein; LC2W_1095 | N/A | Click |
| 33 | 1061249..1062979 | PHAGE_Clostr_phiMMP04: terminase; LC2W_1096; phage(gi414090443) | 3e-126 | Click |
| 34 | 1062998..1064233 | PHAGE_Clostr_phiMMP04: phage portal protein; LC2W_1097; phage(gi414090444) | 9e-115 | Click |
| 35 | 1064211..1064918 | PHAGE_Lactoc_bIL286: protease; LC2W_1098; phage(gi13095787) | 1e-45 | Click |
| 36 | 1064923..1066152 | PHAGE_Clostr_phiMMP04: major capsid protein; LC2W_1099; phage(gi414090446) | 2e-72 | Click |
| 37 | 1066226..1066474 | hypothetical protein; LC2W_1100 | N/A | Click |
| 38 | 1066488..1066814 | PHAGE_Bacill_phBC6A52: hypothetical protein BC2588; LC2W_1101; phage(gi31415853) | 3e-10 | Click |
| 39 | 1066753..1067091 | PHAGE_Bacill_phBC6A52: hypothetical protein BC2589; LC2W_1102; phage(gi31415854) | 3e-10 | Click |
| 40 | 1067075..1067404 | PHAGE_Bacill_phBC6A52: hypothetical protein BC2590; LC2W_1103; phage(gi31415855) | 1e-11 | Click |
| 41 | 1067394..1067777 | PHAGE_Bacill_phBC6A52: hypothetical protein BC2591; LC2W_1104; phage(gi31415856) | 5e-11 | Click |
| 42 | 1067789..1068436 | PHAGE_Bacill_phBC6A52: hypothetical protein BC2592; LC2W_1105; phage(gi31415857) | 6e-12 | Click |
| 43 | 1068513..1068878 | PHAGE_Bacill_phBC6A52: hypothetical protein BC2593; LC2W_1106; phage(gi31415858) | 9e-21 | Click |
| 44 | 1068959..1069120 | hypothetical protein; LC2W_1107 | N/A | Click |
| 45 | 1069140..1072310 | PHAGE_Bacill_phBC6A52: hypothetical protein BC2594; LC2W_1108; phage(gi31415859) | 4e-119 | Click |
| 46 | 1072317..1073012 | PHAGE_Bacill_phBC6A52: Gp13 protein; LC2W_1109; phage(gi31415860) | 2e-21 | Click |
| 47 | 1073009..1077412 | PHAGE_Bacill_phBC6A52: endopeptidase; LC2W_1110; phage(gi31415861) | 8e-67 | Click |
| 48 | 1077441..1077866 | PHAGE_Lactob_LP65: hypothetical protein LP65_gp096; LC2W_1111; phage(gi56693144) | 5e-10 | Click |
| 49 | 1077869..1078138 | PHAGE_Lactoc_bIL285: Orf59; LC2W_1112; phage(gi13095739) | 9e-13 | Click |
| 50 | 1078186..1078572 | PHAGE_Lactob_Nu: putative holin; LC2W_1113; phage(gi77999998) | 2e-66 | Click |
| 51 | 1078756..1079217 | PHAGE_Lactob_Nu: putative holin; LC2W_1114; phage(gi78000034) | 3e-69 | Click |
| 52 | 1079219..1080271 | PHAGE_Lactob_A2: lysin; LC2W_1115; phage(gi22296540) | 0.0 | Click |
| 53 | 1080407..1080429 | attR ACTCCCGGGCTGCGCAGAAACCC | N/A | Click |
Region 4, total : 9 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1342923..1342934 | attL GATTAGAAACCG | N/A | Click |
| 2 | 1356669..1357277 | PROPHAGE_Pseudo_KT2440: ISPpu13, transposase Orf2; LC2W_1415; phage(gi26989833) | 8e-08 | Click |
| 3 | 1357145..1357591 | PROPHAGE_Pseudo_KT2440: ISPpu13, transposase Orf2; LC2W_1416; phage(gi26989833) | 5e-17 | Click |
| 4 | 1357593..1357946 | Integron integrase; LC2W_1417 | N/A | Click |
| 5 | complement(1357855..1358028) | hypothetical protein; LC2W_1418 | N/A | Click |
| 6 | 1357958..1358149 | PROPHAGE_Pseudo_KT2440: ISPpu13, transposase Orf2; LC2W_1419; phage(gi26989833) | 4e-06 | Click |
| 7 | complement(1358456..1359067) | 30S ribosomal protein S4; LC2W_1420 | N/A | Click |
| 8 | complement(1359243..1359725) | hypothetical protein; LC2W_1421 | N/A | Click |
| 9 | 1359902..1361605 | PHAGE_Staphy_S24_1: structure protein putative minor tail protein; LC2W_1422; phage(gi371671333) | 3e-05 | Click |
| 10 | 1361914..1363071 | PHAGE_Africa_virus: NifS-like protein; LC2W_1423; phage(gi9628230) | 2e-06 | Click |
| 11 | 1376089..1376100 | attR GATTAGAAACCG | N/A | Click |
Region 5, total : 30 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 2018902..2018913 | attL GATAAGCGACCC | N/A | Click |
| 2 | 2019282..2019611 | PHAGE_Salmon_1: putative transcriptional regulator (repressor); LC2W_2080; phage(gi169257171) | 9e-06 | Click |
| 3 | 2019988..2020632 | hypothetical protein; LC2W_2081 | N/A | Click |
| 4 | complement(2020763..2020939) | hypothetical protein; LC2W_2082 | N/A | Click |
| 5 | 2020826..2021611 | PROPHAGE_Staphy_N315: transposase; LC2W_2083; phage(gi15927655) | 1e-27 | Click |
| 6 | 2021577..2022062 | PROPHAGE_Staphy_N315: transposase; LC2W_2084; phage(gi15927655) | 9e-08 | Click |
| 7 | complement(2022182..2022826) | hypothetical protein; LC2W_2085 | N/A | Click |
| 8 | complement(2022807..2023097) | hypothetical protein; LC2W_2086 | N/A | Click |
| 9 | complement(2023129..2023434) | PHAGE_Spirop_R8A2B: putative transposase; LC2W_2087; phage(gi9626114) | 1e-08 | Click |
| 10 | 2023844..2024314 | PROPHAGE_Xantho_33913: IS1480 transposase; LC2W_2088; phage(gi21231089) | 4e-48 | Click |
| 11 | complement(2024301..2024909) | PHAGE_Spirop_R8A2B: putative transposase; LC2W_2089; phage(gi9626114) | 1e-06 | Click |
| 12 | complement(2025012..2025533) | hypothetical protein; LC2W_2090 | N/A | Click |
| 13 | 2025706..2025987 | PROPHAGE_Xantho_33913: ISxac3 transposase; LC2W_2091; phage(gi21231087) | 8e-09 | Click |
| 14 | 2026053..2026823 | PHAGE_Lactob_phiAT3: putative transposase B; LC2W_2092; phage(gi48697274) | 3e-26 | Click |
| 15 | 2026859..2027158 | Transposase; LC2W_2093 | N/A | Click |
| 16 | 2027392..2027613 | Transposase IS4 family protein; LC2W_2094 | N/A | Click |
| 17 | 2027677..2027925 | Natural resistance-associated macrophage protein; LC2W_2095 | N/A | Click |
| 18 | 2028082..2028990 | PHAGE_Lactob_1: Mg2+/Co2+ transport protein CorA; LC2W_2096; phage(gi226377699) | 7e-05 | Click |
| 19 | complement(2029274..2030203) | PHAGE_Spirop_R8A2B: putative transposase; LC2W_2097; phage(gi9626114) | 5e-21 | Click |
| 20 | complement(2030317..2031213) | Proline-specific peptidase; LC2W_2098 | N/A | Click |
| 21 | complement(2031217..2032074) | D-aminopeptidase DppA; LC2W_2099 | N/A | Click |
| 22 | complement(2032074..2033159) | Cellulase; LC2W_2100 | N/A | Click |
| 23 | complement(2033188..2034807) | Lipoprotein, peptide binding protein OppA-like protein; LC2W_2101 | N/A | Click |
| 24 | complement(2035079..2035762) | PROPHAGE_Brucel_1330: transposase, putative; LC2W_2102; phage(gi23502708) | 2e-44 | Click |
| 25 | 2035822..2036022 | Restriction modification system DNA specificity domain protein; LC2W_2103 | N/A | Click |
| 26 | 2036840..2037049 | hypothetical protein; LC2W_2104 | N/A | Click |
| 27 | complement(2037109..2037228) | hypothetical protein; LC2W_2105 | N/A | Click |
| 28 | 2037292..2037690 | hypothetical protein; LC2W_2106 | N/A | Click |
| 29 | 2037711..2037962 | hypothetical protein; LC2W_2107 | N/A | Click |
| 30 | 2038318..2038566 | hypothetical protein; LC2W_2108 | N/A | Click |
| 31 | 2038570..2039763 | PHAGE_Bacill_phIS3501: phage integrase; LC2W_2109; phage(gi422934298) | 2e-44 | Click |
| 32 | 2047178..2047189 | attR GATAAGCGACCC | N/A | Click |
Region 6, total : 17 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 2991437..2991449 | attL CCGTGGTTTTCTC | N/A | Click |
| 2 | complement(2991464..2992333) | PROPHAGE_Oceano_HTE831: integrase; LC2W_3082; phage(gi23097608) | 6e-38 | Click |
| 3 | complement(2992363..2992620) | PROPHAGE_Oceano_HTE831: integrase; LC2W_3083; phage(gi23097608) | 7e-10 | Click |
| 4 | complement(2992733..2993371) | PHAGE_Lactob_phiadh: hypothetical protein phiadhp25; LC2W_3084; phage(gi9633025) | 3e-10 | Click |
| 5 | 2993539..2993814 | hypothetical protein; LC2W_3085 | N/A | Click |
| 6 | 2993882..2994103 | hypothetical protein; LC2W_3086 | N/A | Click |
| 7 | 2994214..2994405 | hypothetical protein; LC2W_3087 | N/A | Click |
| 8 | 2994452..2994742 | hypothetical protein; LC2W_3088 | N/A | Click |
| 9 | 2994739..2994927 | Conserved protein; LC2W_3089 | N/A | Click |
| 10 | 2994911..2995723 | PHAGE_Lactoc_bIL310: hypothetical protein bIL310p24; LC2W_3090; phage(gi13095885) | 5e-25 | Click |
| 11 | 2995736..2997322 | PHAGE_Entero_EFRM31: DNA primase; LC2W_3091; phage(gi327198106) | 6e-34 | Click |
| 12 | 2997648..2997983 | PHAGE_Lactob_phiAT3: putative head-tail joining protein; LC2W_3092; phage(gi48697266) | 6e-18 | Click |
| 13 | 2997988..2998173 | hypothetical protein; LC2W_3093 | N/A | Click |
| 14 | 2998709..2999179 | PHAGE_Staphy_phiPV83: phi PVL ORF 1 homologue; LC2W_3094; phage(gi9635714) | 3e-17 | Click |
| 15 | 2999176..3000879 | PHAGE_Lactob_LF1: bacteriophage terminase large subunit; LC2W_3095; phage(gi418489385) | 9e-117 | Click |
| 16 | 3001029..3002210 | PHAGE_Entero_EFRM31: portal protein; LC2W_3096; phage(gi327198113) | 4e-52 | Click |
| 17 | 3002197..3003753 | PHAGE_Entero_EFRM31: major capsid protein; LC2W_3097; phage(gi327198115) | 3e-44 | Click |
| 18 | 3003808..3004101 | PHAGE_Entero_EFRM31: head-tail joining protein; LC2W_3098; phage(gi327198117) | 1e-08 | Click |
| 19 | 3005090..3005102 | attR CCGTGGTTTTCTC | N/A | Click |