Definition | Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1, complete genome. |
---|---|
Accession | CP002614 |
Length | 4,817,868 |
Legend
Hits against Virus and prophage DB | |
Hits against Bacterial DB or GenBank file |
Region 1, total : 9 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 969488..969499 | attL GAAGATGACGAT | N/A | Click |
2 | 973478..975136 | PHAGE_Entero_P2: Old; STMUK_0907; phage(gi9630369) | 8e-06 | Click |
3 | complement(975133..976101) | VirK-like protein; STMUK_0908 | N/A | Click |
4 | 976229..977347 | PHAGE_Cronob_ENT47670: putative tail protein; STMUK_0909; phage(gi431810494) | 4e-05 | Click |
5 | 977344..979290 | PHAGE_Plankt_PaV_LD: ABC transporter; STMUK_0910; phage(gi371496158) | 5e-41 | Click |
6 | complement(979420..979641) | PHAGE_Lactoc_bIL312: Csp; STMUK_0911; phage(gi13095918) | 5e-14 | Click |
7 | 979965..980285 | PHAGE_Cronob_vB_CsaM_GAP32: ATP-dependent Clp protease; STMUK_0912; phage(gi414087232) | 3e-05 | Click |
8 | 980316..982592 | PROPHAGE_Escher_EDL933: ATP-dependent Clp protease ATP-binding subunit; STMUK_0913; phage(gi15800640) | 0.0 | Click |
9 | 982784..983242 | PHAGE_Hypert_2: IS element Dka2 orfA; STMUK_0914; phage(gi300116744) | 4e-16 | Click |
10 | complement(983705..984388) | PROPHAGE_Escher_CFT073: transposase insF; STMUK_0915; phage(gi26249410) | 1e-31 | Click |
11 | 996961..996972 | attR GAAGATGACGAT | N/A | Click |
Region 2, total : 55 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1055828..1055842 | attL TTATAAAAATGTAGC | N/A | Click |
2 | complement(1055877..1057169) | PHAGE_Gifsy_2: bacteriophage integrase; STMUK_0971; phage(gi169257268) | 0.0 | Click |
3 | complement(1057214..1057462) | PHAGE_Gifsy_2: bacteriophage excisionase; STMUK_0972; phage(gi169257269) | 1e-43 | Click |
4 | complement(1057503..1057742) | PHAGE_Gifsy_2: hypothetical protein STM1007.Gifsy2; STMUK_0973; phage(gi169257270) | 7e-40 | Click |
5 | complement(1057785..1058942) | PHAGE_Gifsy_2: conserved hypothetical bacteriophage protein; STMUK_0974; phage(gi169257271) | 0.0 | Click |
6 | complement(1058905..1061790) | PHAGE_Gifsy_2: putatitive bacteriophage exodeoxyribonuclease VIII; STMUK_0975; phage(gi169257272) | 0.0 | Click |
7 | complement(1061917..1062216) | PHAGE_Gifsy_2: hypothetical protein STM1010.Gifsy2; STMUK_0976; phage(gi169257273) | 3e-40 | Click |
8 | complement(1062389..1062649) | PHAGE_Gifsy_2: hypothetical protein STM1010.2n.Gifsy2; STMUK_0977; phage(gi169257275) | 2e-15 | Click |
9 | complement(1062699..1063109) | PHAGE_Gifsy_2: putative bacteriophage regulatory protein; repressor; Lambda gpCI analog; STMUK_0978; phage(gi169257276) | 6e-74 | Click |
10 | 1063434..1063808 | PHAGE_Gifsy_2: bacteriophage transcriptional activator; Lambda gpCII analog; STMUK_0979; phage(gi169257278) | 1e-54 | Click |
11 | 1063893..1064876 | PHAGE_Gifsy_2: bacteriophage DNA replication protein; Lambda gpo homolog; STMUK_0980; phage(gi169257279) | 0.0 | Click |
12 | 1064879..1065628 | PHAGE_Gifsy_2: bacteriophage DNA replication protein; STMUK_0981; phage(gi169257280) | 4e-141 | Click |
13 | 1065639..1065986 | PHAGE_Gifsy_2: hypothetical protein STM1016.Gifsy2; STMUK_0982; phage(gi169257281) | 5e-60 | Click |
14 | 1065983..1066294 | PHAGE_Gifsy_2: conserved hypothetical bacteriophage protein; STMUK_0983; phage(gi169257282) | 7e-53 | Click |
15 | 1066372..1066662 | PHAGE_Gifsy_2: hypothetical protein STM1019.1n.Gifsy2; STMUK_0984; phage(gi169257283) | 8e-47 | Click |
16 | 1066954..1067187 | PHAGE_Gifsy_2: bacteriophage damage-inducible protein DinI; STMUK_0985; phage(gi169257284) | 8e-39 | Click |
17 | 1067603..1068205 | PHAGE_Gifsy_2: hypothetical protein STM1020.Gifsy2; STMUK_0986; phage(gi169257286) | 3e-111 | Click |
18 | 1068205..1068411 | PHAGE_Gifsy_2: hypothetical protein STM1021.1n.Gifsy2; STMUK_0987; phage(gi169257287) | 1e-35 | Click |
19 | 1068414..1069025 | PHAGE_Gifsy_2: NinG; STMUK_0988; phage(gi169257288) | 1e-116 | Click |
20 | 1069158..1069955 | PHAGE_Gifsy_2: prophage antitermination protein; late gene regulator; Lamba gpQ homolog; STMUK_0989; phage(gi169257290) | 7e-155 | Click |
21 | 1070022..1070339 | PHAGE_Gifsy_2: hypothetical protein STM1023.Gifsy2; STMUK_0990; phage(gi169257291) | 1e-58 | Click |
22 | 1070513..1070638 | PHAGE_Gifsy_2: hypothetical protein STM1024.Gifsy2; STMUK_0991; phage(gi169257292) | 1e-17 | Click |
23 | complement(1070774..1071223) | PHAGE_Gifsy_2: hypothetical protein STM1025.Gifsy2; STMUK_0992; phage(gi169257293) | 6e-84 | Click |
24 | complement(1071584..1072096) | PHAGE_Gifsy_2: bacteriophage virulence determinant; GtgA; STMUK_0993; phage(gi169257294) | 6e-98 | Click |
25 | 1072627..1072875 | PHAGE_Gifsy_2: bacteriophage lysis protein; holin; STMUK_0994; phage(gi169257295) | 5e-41 | Click |
26 | 1072859..1073311 | PHAGE_Gifsy_2: bacteriophage lysis protein; endolysin; lysozyme; STMUK_0995; phage(gi169257296) | 2e-83 | Click |
27 | 1073329..1073808 | PHAGE_Gifsy_2: bacteriophage lysis protein; Lambda gpRz homolog; STMUK_0996; phage(gi169257297) | 1e-86 | Click |
28 | 1074016..1074549 | PHAGE_Gifsy_2: bacteriophage DNA packaging protein; terminase, small subunit; STMUK_0997; phage(gi169257298) | 1e-95 | Click |
29 | 1074506..1076644 | PHAGE_Gifsy_2: bacteriophage DNA packaging protein; terminase, large subunit; STMUK_0998; phage(gi169257299) | 0.0 | Click |
30 | 1076641..1076847 | PHAGE_Gifsy_2: conserved hypothetical bacteriophage protein; STMUK_0999; phage(gi169257300) | 1e-31 | Click |
31 | 1077078..1078391 | PHAGE_Gifsy_2: bacteriophage portal protein; STMUK_1000; phage(gi169257301) | 0.0 | Click |
32 | 1078315..1080396 | PHAGE_Gifsy_2: bacteriophage Clp protease involved in capsid processing; STMUK_1001; phage(gi169257302) | 0.0 | Click |
33 | 1080487..1080810 | PHAGE_Gifsy_2: conserved hypothetical bacteriophage protein; STMUK_1002; phage(gi169257303) | 3e-55 | Click |
34 | 1080803..1081102 | PHAGE_Gifsy_2: conserved hypothetical bacteriophage protein; STMUK_1003; phage(gi169257304) | 6e-52 | Click |
35 | 1081083..1081649 | PHAGE_Gifsy_2: bacteriophage morphogenesis protein; Lambda gpZ homolog; STMUK_1004; phage(gi169257305) | 3e-103 | Click |
36 | 1081646..1082047 | PHAGE_Gifsy_2: bacteriophage tail shaft stabilization protein; Lambda gpU homolog; STMUK_1005; phage(gi169257306) | 3e-72 | Click |
37 | 1082059..1082808 | PHAGE_Gifsy_2: bacteriophage major tail protein; Lambda gpV homolog; STMUK_1006; phage(gi169257307) | 2e-141 | Click |
38 | 1082854..1083252 | PHAGE_Gifsy_2: bacteriophage tail assembly chaperone; Lambda gpG homolog; STMUK_1007; phage(gi169257308) | 8e-70 | Click |
39 | 1083249..1083578 | PHAGE_Gifsy_2: bacteriophage tail assembly chapterone - part of G+G' frameshift hybrid protein ; Lambda gpT homolog; STMUK_1008; phage(gi169257309) | 6e-57 | Click |
40 | 1083658..1086645 | PHAGE_Gifsy_2: bacteriophage tail tape measure protein; minor tail protein; Lambda gpH homolog; STMUK_1009; phage(gi169257310) | 0.0 | Click |
41 | 1086642..1086974 | PHAGE_Gifsy_2: bacteriophage tail tip assembly protein; Lambda gpM homolog; STMUK_1010; phage(gi169257311) | 2e-61 | Click |
42 | 1087073..1087570 | PHAGE_Gifsy_2: bacteriophage virulence determinant; Lom homolog; STMUK_1011; phage(gi169257312) | 3e-93 | Click |
43 | complement(1087687..1088220) | PHAGE_Gifsy_2: bacteriophage virulence determinant; superoxide dismutase precursor; STMUK_1012; phage(gi169257313) | 3e-102 | Click |
44 | 1088310..1089005 | PHAGE_Gifsy_2: bacteriophage tail tip assembly protein; Lambda gpL homolog; STMUK_1013; phage(gi169257314) | 1e-135 | Click |
45 | 1089015..1089752 | PHAGE_Gifsy_2: bacteriophage tail tip assembly protein; Lambda gpK homolog; STMUK_1014; phage(gi169257315) | 3e-152 | Click |
46 | 1089650..1090354 | PHAGE_Gifsy_2: bacteriophage tail tip assembly protein; Lambda gpI homolog; STMUK_1015; phage(gi169257316) | 5e-129 | Click |
47 | 1090426..1093776 | PHAGE_Gifsy_2: bacteriophage tail fiber (host specificity) protein; Lambda gp J homolog; STMUK_1016; phage(gi169257317) | 0.0 | Click |
48 | 1093815..1094057 | PHAGE_Gifsy_2: hypothetical protein STM1049.2n.Gifsy2; STMUK_1017; phage(gi169257319) | 3e-40 | Click |
49 | 1094111..1096549 | PHAGE_Gifsy_2: bacteriophage side tail fiber protein; Lambda gpStf (gpN) homolog; STMUK_1018; phage(gi169257320) | 0.0 | Click |
50 | 1096549..1097130 | PHAGE_Gifsy_2: bacteriophage side tail fiber assembly protein; Lambda gpTfa analog; STMUK_1019; phage(gi169257321) | 3e-111 | Click |
51 | 1097606..1098574 | PHAGE_Gifsy_2: prophage virulence determinant; secreted effector protein; STMUK_1020; phage(gi169257322) | 0.0 | Click |
52 | 1098842..1099090 | PHAGE_Stx2_c_1717: transposase; STMUK_1021; phage(gi209447153) | 3e-26 | Click |
53 | complement(1099222..1099848) | PHAGE_Pseudo_F116: hypothetical protein F116p67; STMUK_1022; phage(gi56692976) | 7e-31 | Click |
54 | complement(1099917..1100216) | hypothetical protein; STMUK_1023 | N/A | Click |
55 | complement(1100201..1100887) | hypothetical protein; STMUK_1024 | N/A | Click |
56 | complement(1101158..1101349) | PHAGE_Entero_mEp390: DinI-like family protein; STMUK_1025; phage(gi428782688) | 6e-25 | Click |
57 | 1101655..1101669 | attR TTATAAAAATGTAGC | N/A | Click |
Region 3, total : 22 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1917431..1917799 | PHAGE_Entero_mEp235: integrase; STMUK_1837; phage(gi428781836) | 5e-20 | Click |
2 | 1917934..1917956 | attL AAAAAGAGACCGAATACGATTCC | N/A | Click |
3 | 1919103..1920017 | integral membrane protein; STMUK_1838 | N/A | Click |
4 | 1920150..1920308 | putative inner membrane protein; STMUK_1839 | N/A | Click |
5 | 1920318..1920932 | putative inner membrane protein; STMUK_1840 | N/A | Click |
6 | complement(1921259..1921384) | PHAGE_Salmon_ST64B: DNA invertase pin protein; STMUK_1841; phage(gi23505471) | 2e-08 | Click |
7 | complement(1921381..1921557) | hypothetical protein; STMUK_1842 | N/A | Click |
8 | 1922104..1922262 | hypothetical protein; STMUK_1843 | N/A | Click |
9 | 1922775..1922975 | PHAGE_Gifsy_1: PagK-like protein; STMUK_1844; phage(gi169257211) | 3e-34 | Click |
10 | complement(1923072..1923953) | PHAGE_Salmon_1: putative bacteriophage tail assembly protein; STMUK_1845; phage(gi169257205) | 4e-73 | Click |
11 | complement(1924108..1924371) | PHAGE_Salmon_1: bacteriophage terminase, small subunit; STMUK_1846; phage(gi169257184) | 7e-43 | Click |
12 | 1924679..1924846 | lytic enzyme; STMUK_1847 | N/A | Click |
13 | complement(1925103..1925636) | PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; STMUK_1848; phage(gi16765210) | 5e-95 | Click |
14 | complement(1925690..1925977) | PHAGE_Salmon_1: putative bacteriophage endolysin; STMUK_1849; phage(gi169257182) | 7e-30 | Click |
15 | 1926110..1926604 | PHAGE_Gifsy_2: putatitive bacteriophage exodeoxyribonuclease VIII; STMUK_1850; phage(gi169257272) | 1e-16 | Click |
16 | 1926622..1927518 | PHAGE_Entero_mEp235: integrase; STMUK_1851; phage(gi428781836) | 6e-68 | Click |
17 | 1927649..1927671 | attR AAAAAGAGACCGAATACGATTCC | N/A | Click |
18 | complement(1927715..1927834) | putative cytoplasmic protein; STMUK_1852 | N/A | Click |
19 | complement(1927892..1928245) | PHAGE_Entero_PsP3: gp28; STMUK_1853; phage(gi41057381) | 4e-08 | Click |
20 | complement(1928262..1929137) | putative inner membrane protein; STMUK_1854 | N/A | Click |
21 | complement(1929138..1929512) | hypothetical protein; STMUK_1855 | N/A | Click |
22 | 1929650..1929880 | PHAGE_Pectob_ZF40: putative DNA polymerase; STMUK_1856; phage(gi422936677) | 6e-17 | Click |
23 | 1929988..1930644 | putative amidohydrolase; STMUK_1857 | N/A | Click |
24 | 1930668..1931366 | PHAGE_Cronob_vB_CsaM_GAP32: putative DNA polymerase III epsilon subunit; STMUK_1858; phage(gi414087193) | 2e-15 | Click |
Region 4, total : 59 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 2038630..2038641 | attL CTAAAATCTGGC | N/A | Click |
2 | complement(2038822..2039034) | PHAGE_Lactoc_bIL312: Csp; STMUK_1974; phage(gi13095918) | 1e-16 | Click |
3 | complement(2039489..2040757) | PHAGE_Salmon_vB_SosS_Oslo: error-prone lesion bypass DNA polymerase V; STMUK_1975; phage(gi399528790) | 0.0 | Click |
4 | complement(2040760..2041179) | PHAGE_Salmon_vB_SosS_Oslo: errror-prone repair protein UmuD; STMUK_1976; phage(gi399528789) | 1e-31 | Click |
5 | complement(2041306..2041467) | putative cytoplasmic protein; STMUK_1977 | N/A | Click |
6 | 2041817..2041831 | attL CGGTTTTCGAGACCG | N/A | Click |
7 | complement(2042098..2042319) | PHAGE_Salmon_ST64B: DNA invertase pin protein; STMUK_1978; phage(gi23505471) | 7e-38 | Click |
8 | 2042532..2043539 | PHAGE_Salmon_ST64B: hypothetical protein sb26; STMUK_1979; phage(gi23505470) | 0.0 | Click |
9 | complement(2043540..2043689) | PHAGE_Erwini_ENT90: tail sheath protein; STMUK_1980; phage(gi431810939) | 2e-05 | Click |
10 | complement(2043824..2044393) | PHAGE_Salmon_ST64B: Probable tail fiber assembly protein; STMUK_1981; phage(gi23505469) | 2e-109 | Click |
11 | complement(2044393..2045955) | PHAGE_Salmon_ST64B: tail protein; STMUK_1982; phage(gi23505468) | 0.0 | Click |
12 | complement(2045942..2046529) | PHAGE_Salmon_ST64B: putative tail protein; STMUK_1983; phage(gi23505467) | 2e-115 | Click |
13 | complement(2046532..2047053) | PHAGE_Salmon_ST64B: putative tail protein; STMUK_1984; phage(gi23505466) | 1e-96 | Click |
14 | complement(2047088..2047612) | PHAGE_Salmon_ST64B: putative head assembly protein; STMUK_1985; phage(gi23505465) | 2e-97 | Click |
15 | complement(2047605..2048018) | PHAGE_Salmon_ST64B: putative tail protein; STMUK_1986; phage(gi23505464) | 2e-77 | Click |
16 | complement(2048023..2048556) | PHAGE_Salmon_ST64B: putative base plate assembly protein; STMUK_1987; phage(gi23505463) | 3e-99 | Click |
17 | complement(2048556..2049614) | PHAGE_Salmon_ST64B: Tail protein; STMUK_1988; phage(gi23505462) | 0.0 | Click |
18 | complement(2049611..2050951) | PHAGE_Salmon_ST64B: tail/DNA circulation protein; STMUK_1989; phage(gi23505461) | 0.0 | Click |
19 | complement(2050985..2052913) | PHAGE_Salmon_ST64B: tail protein; STMUK_1990; phage(gi23505460) | 0.0 | Click |
20 | complement(2052998..2053324) | PHAGE_Salmon_ST64B: hypothetical protein sb15; STMUK_1991; phage(gi23505501) | 1e-55 | Click |
21 | complement(2053321..2053677) | PHAGE_Salmon_ST64B: Tail tube protein; STMUK_1992; phage(gi23505459) | 8e-65 | Click |
22 | complement(2053677..2055173) | PHAGE_Salmon_ST64B: Tail Sheath protein; STMUK_1993; phage(gi23505458) | 0.0 | Click |
23 | complement(2055163..2055327) | PHAGE_Salmon_ST64B: hypothetical protein sb12; STMUK_1994; phage(gi23505457) | 9e-27 | Click |
24 | complement(2055331..2055891) | PHAGE_Salmon_ST64B: hypothetical protein sb11; STMUK_1995; phage(gi23505456) | 3e-107 | Click |
25 | complement(2055888..2056400) | PHAGE_Salmon_ST64B: hypothetical protein sb10; STMUK_1996; phage(gi23505455) | 3e-97 | Click |
26 | complement(2056372..2056776) | PHAGE_Salmon_ST64B: hypothetical protein sb9; STMUK_1997; phage(gi23505454) | 8e-74 | Click |
27 | complement(2056773..2057096) | PHAGE_Salmon_ST64B: hypothetical protein sb8; STMUK_1998; phage(gi23505453) | 5e-57 | Click |
28 | complement(2057099..2057299) | PHAGE_Salmon_ST64B: hypothetical protein sb7; STMUK_1999; phage(gi23505452) | 2e-31 | Click |
29 | complement(2057350..2058555) | PHAGE_Salmon_ST64B: Major capsid protein precursor; STMUK_2000; phage(gi23505451) | 0.0 | Click |
30 | complement(2058570..2059220) | PHAGE_Salmon_ST64B: Pro-head protease; STMUK_2001; phage(gi23505450) | 2e-120 | Click |
31 | complement(2059198..2060439) | PHAGE_Salmon_ST64B: Portal Protein; STMUK_2002; phage(gi23505449) | 0.0 | Click |
32 | complement(2060439..2060621) | PHAGE_Salmon_ST64B: putative integral membrane protein; STMUK_2003; phage(gi23505448) | 1e-29 | Click |
33 | complement(2060633..2062366) | PHAGE_Salmon_ST64B: Terminase large subunit; STMUK_2004; phage(gi23505447) | 0.0 | Click |
34 | complement(2062363..2062857) | PHAGE_Salmon_ST64B: terminase small subunit; STMUK_2005; phage(gi23505446) | 9e-93 | Click |
35 | complement(2063916..2064335) | PHAGE_Salmon_ST64B: hypothetical protein sb54; STMUK_2006; phage(gi23505498) | 1e-73 | Click |
36 | complement(2064548..2065033) | PHAGE_Salmon_ST64B: lysis protein; STMUK_2007; phage(gi23505497) | 2e-86 | Click |
37 | complement(2065647..2065991) | PHAGE_Salmon_ST64B: lysis protein (holin); STMUK_2008; phage(gi23505495) | 5e-46 | Click |
38 | complement(2066517..2066876) | PHAGE_Salmon_ST64B: hypothetical protein sb50; STMUK_2009; phage(gi23505494) | 4e-67 | Click |
39 | complement(2066907..2067530) | PHAGE_Salmon_ST64B: hypothetical protein sb49; STMUK_2010; phage(gi23505493) | 3e-120 | Click |
40 | complement(2067541..2068536) | PHAGE_Salmon_ST64B: hypothetical protein sb47; STMUK_2011; phage(gi23505491) | 2e-134 | Click |
41 | complement(2068538..2069398) | PHAGE_Salmon_ST64B: hypothetical protein sb46; STMUK_2012; phage(gi23505490) | 8e-165 | Click |
42 | complement(2069415..2069804) | PHAGE_Salmon_ST64B: holiday-junction resolvase; STMUK_2013; phage(gi23505489) | 1e-71 | Click |
43 | complement(2069801..2070694) | PHAGE_Salmon_ST64B: putative DNA methyltransferase; STMUK_2014; phage(gi23505488) | 3e-175 | Click |
44 | complement(2071178..2071996) | PHAGE_Salmon_ST64B: putative replication protein; STMUK_2015; phage(gi23505486) | 5e-158 | Click |
45 | complement(2071993..2072217) | PHAGE_Entero_mEp460: hypothetical protein; STMUK_2016; phage(gi428782358) | 1e-35 | Click |
46 | complement(2072214..2073371) | PHAGE_Salmon_ST64B: putative antirepressor; STMUK_2017; phage(gi23505485) | 0.0 | Click |
47 | complement(2073368..2073922) | PHAGE_Salmon_ST64B: hypothetical protein sb40; STMUK_2018; phage(gi23505484) | 4e-47 | Click |
48 | complement(2073951..2074175) | PHAGE_Salmon_ST64B: DNA binding protein; STMUK_2019; phage(gi23505483) | 2e-36 | Click |
49 | 2074273..2074968 | PHAGE_Salmon_ST64B: regulatory protein; STMUK_2020; phage(gi23505482) | 4e-129 | Click |
50 | 2075621..2076154 | PHAGE_Salmon_ST64B: hypothetical protein sb37; STMUK_2021; phage(gi23505481) | 4e-66 | Click |
51 | 2076212..2077039 | PHAGE_Salmon_ST64B: hypothetical protein sb36; STMUK_2022; phage(gi23505480) | 2e-154 | Click |
52 | 2077176..2077715 | PHAGE_Salmon_ST64B: hypothetical protein sb35; STMUK_2023; phage(gi23505479) | 7e-100 | Click |
53 | 2078013..2078528 | PHAGE_Salmon_ST64B: hypothetical protein sb33; STMUK_2024; phage(gi23505477) | 5e-98 | Click |
54 | 2078525..2079142 | PHAGE_Salmon_ST64B: hypothetical protein sb32; STMUK_2025; phage(gi23505476) | 2e-116 | Click |
55 | 2079139..2079972 | PHAGE_Salmon_ST64B: hypothetical protein sb31; STMUK_2026; phage(gi23505475) | 6e-164 | Click |
56 | 2079976..2080545 | PHAGE_Salmon_ST64B: Endodeoxyribonuclease; STMUK_2027; phage(gi23505474) | 8e-110 | Click |
57 | 2080570..2080812 | PHAGE_Salmon_ST64B: hypothetical protein sb29; STMUK_2028; phage(gi23505473) | 2e-41 | Click |
58 | 2080814..2081803 | PHAGE_Salmon_ST64B: Integrase protein; STMUK_2029; phage(gi23505472) | 0.0 | Click |
59 | complement(2081921..2082007) | tRNA | N/A | Click |
60 | 2081964..2081978 | attR CGGTTTTCGAGACCG | N/A | Click |
61 | 2082095..2082892 | putative inner membrane protein; STMUK_2031 | N/A | Click |
62 | 2082994..2083066 | tRNA | N/A | Click |
63 | 2083964..2084036 | tRNA | N/A | Click |
64 | 2084202..2084675 | PHAGE_Entero_phiV10: hypothetical protein PhiV10p09; STMUK_2034; phage(gi89152430) | 5e-45 | Click |
65 | 2085150..2085848 | PROPHAGE_Salmon_LT2: integrase; STMUK_2035; phage(gi16766072) | 2e-39 | Click |
66 | 2093897..2093908 | attR CTAAAATCTGGC | N/A | Click |
Region 5, total : 16 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | complement(2330706..2331209) | PHAGE_Entero_P1: HumD; STMUK_2260; phage(gi46401723) | 7e-51 | Click |
2 | 2331237..2331527 | PHAGE_Klebsi_phiKO2: Gp22; STMUK_2261; phage(gi46402108) | 1e-25 | Click |
3 | 2331875..2333704 | PHAGE_Salmon_c341: O-polysaccharide acetyltransferase protein; STMUK_2262; phage(gi255252697) | 5e-68 | Click |
4 | complement(2333758..2334201) | PHAGE_Entero_mEp213: tail fiber assembly protein; STMUK_2263; phage(gi428782612) | 5e-15 | Click |
5 | complement(2334579..2335106) | PHAGE_Sodali_phiSG1: putative phage tail fiber assembly protein; STMUK_2264; phage(gi89886004) | 1e-13 | Click |
6 | complement(2335109..2336350) | PHAGE_Entero_SfV: hypothetical protein SfVp21; STMUK_2265; phage(gi19548989) | 2e-20 | Click |
7 | complement(2336411..2336929) | PHAGE_Entero_SfV: capsid protease; STMUK_2266; phage(gi19548994) | 7e-76 | Click |
8 | complement(2336943..2337272) | PHAGE_Entero_SfV: holin; STMUK_2267; phage(gi19549036) | 9e-38 | Click |
9 | 2337569..2338900 | hypothetical protein; STMUK_2268 | N/A | Click |
10 | complement(2338929..2339297) | PHAGE_Entero_cdtI: antitermination protein Q; STMUK_2269; phage(gi148609434) | 6e-54 | Click |
11 | complement(2339312..2340301) | PHAGE_Entero_SfV: hypothetical protein SfVp45; STMUK_2270; phage(gi19549032) | 2e-159 | Click |
12 | complement(2340309..2340539) | PHAGE_Entero_SfV: hypothetical protein SfVp44; STMUK_2271; phage(gi19549031) | 4e-35 | Click |
13 | complement(2340630..2342996) | PHAGE_Gifsy_2: prophage virulence determinant; secreted effector protein; STMUK_2272; phage(gi169257322) | 1e-73 | Click |
14 | complement(2343165..2343368) | putative phage tail fiber protein; STMUK_2273 | N/A | Click |
15 | complement(2343665..2344456) | PHAGE_Gifsy_2: bacteriophage side tail fiber protein; Lambda gpStf (gpN) homolog; STMUK_2274; phage(gi169257320) | 3e-72 | Click |
16 | 2344759..2344962 | PHAGE_Entero_HK225: DNA damage-inducible protein; STMUK_2275; phage(gi428782403) | 9e-05 | Click |
Region 6, total : 55 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 2728740..2730233 | PHAGE_Gifsy_1: leucine-rich repeat protein; STMUK_2616; phage(gi169257209) | 0.0 | Click |
2 | 2731090..2731635 | PHAGE_Gifsy_1: hypothetical protein STM2585.Gifsy1; STMUK_2617; phage(gi169257210) | 2e-101 | Click |
3 | 2731820..2731831 | attL ACAAAAACCATG | N/A | Click |
4 | 2732747..2732974 | PHAGE_Gifsy_1: PagK-like protein; STMUK_2618; phage(gi169257211) | 8e-41 | Click |
5 | complement(2733071..2733649) | PHAGE_Gifsy_1: bacteriophage side tail fiber assembly factor & structural component; Lambda gpTfa homolog; STMUK_2619; phage(gi169257212) | 1e-110 | Click |
6 | complement(2733639..2734463) | PHAGE_Gifsy_1: conserved hypothetical protein; contains pfam01661, Macro, Macro domain; STMUK_2620; phage(gi169257213) | 2e-161 | Click |
7 | complement(2734460..2736832) | PHAGE_Gifsy_1: bacteriophage side tail fiber protein; Lambda gpSft (gpN) homolog; STMUK_2621; phage(gi169257214) | 0.0 | Click |
8 | complement(2736886..2737128) | PHAGE_Gifsy_1: hypothetical protein STM2589.1n.Gifsy1; STMUK_2622; phage(gi169257215) | 4e-40 | Click |
9 | complement(2737167..2740529) | PHAGE_Gifsy_1: bacteriophage host specificity protein; tail fiber; Lambda gpJ homolog; STMUK_2623; phage(gi169257216) | 0.0 | Click |
10 | complement(2740591..2741238) | PHAGE_Gifsy_1: bacteriophage tail tip assembly protein; Lambda gpI homolog; STMUK_2624; phage(gi169257217) | 6e-121 | Click |
11 | complement(2741136..2741735) | PHAGE_Gifsy_1: bacteriophage tail tip assembly protein; Lambda gpK homolog; STMUK_2625; phage(gi169257218) | 5e-124 | Click |
12 | complement(2741880..2742578) | PHAGE_Gifsy_1: bacteriophage tail tip assembly protein; Lambda gpL homolog; STMUK_2626; phage(gi169257219) | 7e-136 | Click |
13 | complement(2742588..2742917) | PHAGE_Gifsy_1: bacteriophage tail tip assembly protein; Lambda gpM homolog; STMUK_2627; phage(gi169257220) | 2e-61 | Click |
14 | complement(2742920..2746015) | PHAGE_Gifsy_1: bacteriophage tail tape measure protein; minor tail protein; Lambda gpH homolog; STMUK_2628; phage(gi169257221) | 0.0 | Click |
15 | complement(2745987..2746325) | PHAGE_Gifsy_1: part of bacteriophage tail assembly chaperone gpG by translational frameshifting; Lambda gpT homolog; STMUK_2629; phage(gi169257222) | 3e-61 | Click |
16 | complement(2746322..2746717) | PHAGE_Gifsy_1: bacteriophage tail assembly chaperone; Lambda gpG homolog; STMUK_2630; phage(gi169257223) | 2e-70 | Click |
17 | complement(2746768..2747514) | PHAGE_Gifsy_1: bacteriophage major tail subunit; Lambda gpV homolog; STMUK_2631; phage(gi169257224) | 5e-138 | Click |
18 | complement(2747522..2747923) | PHAGE_Gifsy_1: bacteriophage tail shaft stabilization protein; Lambda gpU homolog; STMUK_2632; phage(gi169257225) | 2e-73 | Click |
19 | 2747912..2749162 | PHAGE_Gifsy_1: transposase; STMUK_2633; phage(gi169257226) | 0.0 | Click |
20 | complement(2749211..2749789) | PHAGE_Gifsy_1: bacteriophage head-tail assembly protein; Lambda gpZ homolog; STMUK_2634; phage(gi169257227) | 7e-104 | Click |
21 | complement(2749817..2750200) | PHAGE_Gifsy_1: bacteriophage minor capsid protein; forms tail attachment site on head; Lambda FII homolog; STMUK_2635; phage(gi169257228) | 1e-68 | Click |
22 | complement(2750211..2750570) | PHAGE_Gifsy_1: bacteriophage accessory DNA packaging protein; Lambda FI homolog; STMUK_2636; phage(gi169257229) | 4e-62 | Click |
23 | complement(2750628..2751656) | PHAGE_Gifsy_1: bacteriophage major capsid protein; Lambda gpE homolog; STMUK_2637; phage(gi169257230) | 0.0 | Click |
24 | complement(2751711..2752058) | PHAGE_Gifsy_1: bacteriophage head decoration protein; Lambda gpD homolog; STMUK_2638; phage(gi169257231) | 2e-61 | Click |
25 | complement(2752071..2753567) | PHAGE_Gifsy_1: bacteriophage prohead protease; Lambda gpC homolog; STMUK_2639; phage(gi169257232) | 0.0 | Click |
26 | complement(2753557..2755137) | PHAGE_Gifsy_1: bacteriophage portal protein; Lambda gpB homolog; STMUK_2640; phage(gi169257233) | 0.0 | Click |
27 | complement(2755134..2755337) | PHAGE_Gifsy_1: bacteriophage head-to-tail joining protein; adapter between portal and gpFII; Lambda gpW homolog; STMUK_2641; phage(gi169257234) | 2e-31 | Click |
28 | complement(2755321..2757252) | PHAGE_Gifsy_1: DNA packaging protein; large terminase subunit; Lambda gpA homolog; STMUK_2642; phage(gi169257235) | 0.0 | Click |
29 | complement(2757224..2757769) | PHAGE_Gifsy_1: DNA packaging protein; small terminase subunit; Lambda Nu1 homolog; STMUK_2643; phage(gi169257236) | 2e-87 | Click |
30 | 2758056..2758457 | PHAGE_Gifsy_1: hypothetical protein STM2610.Gifsy1; STMUK_2644; phage(gi169257237) | 9e-72 | Click |
31 | complement(2758693..2759166) | PHAGE_Gifsy_1: bacteriophage lysis protein; Rz; STMUK_2645; phage(gi169257238) | 6e-80 | Click |
32 | complement(2759163..2759615) | PHAGE_Gifsy_1: bacteriophage lysin protein; endolysin; STMUK_2646; phage(gi169257239) | 3e-81 | Click |
33 | complement(2759599..2759928) | PHAGE_Gifsy_1: bacteriophage lysis protein; holin; STMUK_2647; phage(gi169257240) | 4e-58 | Click |
34 | 2760204..2760890 | PHAGE_Gifsy_1: virulence protein GogA; STMUK_2648; phage(gi169257241) | 3e-133 | Click |
35 | complement(2761105..2761293) | PHAGE_Gifsy_1: hypothetical protein STM2615.1n.Gifsy1; STMUK_2649; phage(gi169257242) | 2e-33 | Click |
36 | complement(2761383..2761456) | tRNA | N/A | Click |
37 | complement(2761800..2762363) | PHAGE_Gifsy_1: conserved hypothetical bacteriophage protein; STMUK_2651; phage(gi169257243) | 1e-103 | Click |
38 | complement(2762636..2763313) | PHAGE_Gifsy_1: bacteriophage antiterminator protein Q; STMUK_2652; phage(gi169257244) | 3e-130 | Click |
39 | complement(2763310..2763450) | PHAGE_Gifsy_1: conserved hypothetical bacteriophage protein; STMUK_2653; phage(gi169257245) | 7e-21 | Click |
40 | complement(2763447..2764058) | PHAGE_Gifsy_1: NinG; STMUK_2654; phage(gi169257246) | 5e-117 | Click |
41 | complement(2764267..2764869) | PHAGE_Gifsy_1: conserved hypothetical bacteriophage protein; STMUK_2655; phage(gi169257248) | 2e-111 | Click |
42 | complement(2765269..2765502) | PHAGE_Gifsy_1: bacteriophage putative DNA damage-inducible protein; DinI homolog; STMUK_2656; phage(gi169257250) | 2e-38 | Click |
43 | 2765772..2766764 | hypothetical protein; STMUK_2657 | N/A | Click |
44 | complement(2766791..2767309) | PHAGE_Gifsy_1: conserved hypothetical bacteriophage protein; STMUK_2658; phage(gi169257252) | 8e-31 | Click |
45 | complement(2767306..2767653) | PHAGE_Gifsy_1: hypothetical protein STM2624.Gifsy1; STMUK_2659; phage(gi169257253) | 6e-53 | Click |
46 | complement(2767664..2768413) | PHAGE_Gifsy_1: bacteriophage DNA replication protein; DnaC homolog; STMUK_2660; phage(gi169257254) | 9e-141 | Click |
47 | complement(2768416..2769435) | PHAGE_Gifsy_1: bacteriophage replication protein O; STMUK_2661; phage(gi169257255) | 2e-171 | Click |
48 | complement(2769589..2769909) | PHAGE_Gifsy_1: probable regulatory protein; transcriptional activator; lambda CII analog; STMUK_2662; phage(gi169257256) | 1e-54 | Click |
49 | 2770238..2770651 | PHAGE_Entero_mEp237: prophage repressor; STMUK_2663; phage(gi435439304) | 2e-44 | Click |
50 | 2770794..2771903 | PHAGE_Salmon_ST160: regulatory protein; STMUK_2664; phage(gi318065923) | 6e-120 | Click |
51 | 2772384..2772542 | PHAGE_Gifsy_1: hypothetical protein STM2630.Gifsy1; STMUK_2666; phage(gi169257260) | 6e-25 | Click |
52 | 2772564..2772914 | PHAGE_Gifsy_1: hypothetical protein STM2631.Gifsy1; STMUK_2667; phage(gi169257261) | 1e-62 | Click |
53 | 2773041..2775968 | PHAGE_Gifsy_1: bacteriophage exodeoxyribonuclease VIII-like protein; STMUK_2668; phage(gi169257262) | 0.0 | Click |
54 | 2775979..2777088 | PHAGE_Gifsy_1: RecT; STMUK_2669; phage(gi169257263) | 0.0 | Click |
55 | 2777131..2777370 | PHAGE_Gifsy_1: hypothetical protein STM2634.Gifsy1; STMUK_2670; phage(gi169257264) | 1e-38 | Click |
56 | 2777411..2777695 | PHAGE_Gifsy_1: hypothetical protein STM2635.Gifsy1; STMUK_2671; phage(gi169257265) | 6e-50 | Click |
57 | complement(2777673..2778902) | PHAGE_Gifsy_1: bacteriophage integrase protein; STMUK_2672; phage(gi169257266) | 0.0 | Click |
58 | 2778976..2778987 | attR ACAAAAACCATG | N/A | Click |
Region 7, total : 15 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 2868318..2868330 | attL AATGCTATTTTTA | N/A | Click |
2 | 2868917..2869792 | PROPHAGE_Salmon_LT2: integrase; STMUK_2748; phage(gi16766072) | 4e-168 | Click |
3 | 2869958..2871832 | putative inner membrane protein; STMUK_2749 | N/A | Click |
4 | complement(2872092..2873375) | putative inner membrane protein; STMUK_2750 | N/A | Click |
5 | 2873953..2874549 | PROPHAGE_Entero_Fels-2: integrase-like protein; STMUK_2751; phage(gi16766052) | 3e-52 | Click |
6 | complement(2875003..2875332) | PROPHAGE_Xantho_33913: ISxcC1 transposase; STMUK_2752; phage(gi21231060) | 7e-34 | Click |
7 | complement(2875554..2875820) | PROPHAGE_Salmon_LT2: transposase; STMUK_2753; phage(gi16766077) | 7e-45 | Click |
8 | complement(2876273..2876911) | putative cytoplasmic protein; STMUK_2754 | N/A | Click |
9 | complement(2876908..2878890) | putative DNA/RNA helicase; STMUK_2755 | N/A | Click |
10 | 2879169..2879468 | PROPHAGE_Escher_MG1655: IS3 transposase A; STMUK_2756; phage(gi226524700) | 2e-41 | Click |
11 | 2879465..2880331 | PROPHAGE_Escher_MG1655: IS3 transposase B; STMUK_2757; phage(gi16128284) | 3e-145 | Click |
12 | complement(2881111..2881650) | PHAGE_Salmon_SSU5: putative repressor of phase 1 flagellin; STMUK_2758; phage(gi390013956) | 9e-13 | Click |
13 | complement(2881718..2883238) | PHAGE_Escher_phiKT: tail fiber protein; STMUK_2759; phage(gi422936632) | 1e-07 | Click |
14 | 2883330..2883902 | PHAGE_Escher_D108: G region invertase; STMUK_2760; phage(gi281199698) | 4e-67 | Click |
15 | 2884865..2885980 | putative glycosyl transferase; STMUK_2761 | N/A | Click |
16 | 2886061..2889714 | PHAGE_Bacill_SPBc2: ABC transporter; STMUK_2762; phage(gi9630145) | 2e-25 | Click |
17 | 2899678..2899690 | attR AATGCTATTTTTA | N/A | Click |
Region 8, total : 25 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | complement(4379063..4379791) | PHAGE_Entero_P1: PmgQ; STMUK_4180; phage(gi46401711) | 7e-34 | Click |
2 | complement(4379988..4380278) | putative inner membrane protein; STMUK_4181 | N/A | Click |
3 | complement(4380527..4380982) | PHAGE_Haemop_SuMu: enoyl-CoA hydratase/carnithine racemase-like protein; STMUK_4182; phage(gi418489075) | 2e-24 | Click |
4 | complement(4380979..4381584) | putative cytoplasmic protein; STMUK_4183 | N/A | Click |
5 | complement(4381589..4383334) | PHAGE_Entero_PsP3: gp19; STMUK_4184; phage(gi41057371) | 1e-78 | Click |
6 | complement(4383337..4383969) | PHAGE_Burkho_BcepMu: gp51; STMUK_4185; phage(gi48696961) | 4e-26 | Click |
7 | complement(4383962..4385077) | PHAGE_Burkho_BcepMu: gp50; STMUK_4186; phage(gi48696960) | 2e-105 | Click |
8 | complement(4385068..4385427) | PHAGE_Burkho_BcepMu: gp49; STMUK_4187; phage(gi48696959) | 1e-35 | Click |
9 | complement(4385591..4387138) | PHAGE_Salmon_epsilon34: GtrC; putative membrane protein; STMUK_4188; phage(gi221328637) | 2e-59 | Click |
10 | complement(4387138..4388067) | PHAGE_Entero_SfV: bactoprenol glucosyltransferase; STMUK_4189; phage(gi19549012) | 3e-152 | Click |
11 | complement(4388064..4388426) | PHAGE_Entero_SfV: putative flippase; STMUK_4190; phage(gi19549013) | 7e-48 | Click |
12 | complement(4388754..4389476) | PHAGE_Burkho_BcepMu: gp48; STMUK_4191; phage(gi48696958) | 2e-39 | Click |
13 | complement(4389486..4390529) | PHAGE_Burkho_BcepMu: gp47; STMUK_4192; phage(gi48696957) | 9e-81 | Click |
14 | complement(4390517..4390726) | PHAGE_Burkho_BcepMu: gp46; STMUK_4193; phage(gi48696956) | 9e-19 | Click |
15 | complement(4390726..4391679) | PHAGE_Burkho_BcepMu: gp45; STMUK_4194; phage(gi48696955) | 1e-45 | Click |
16 | complement(4391679..4394033) | PHAGE_Burkho_BcepMu: gp44; STMUK_4195; phage(gi48696954) | 1e-68 | Click |
17 | complement(4394218..4394535) | PHAGE_Burkho_BcepMu: gp41; STMUK_4196; phage(gi48696951) | 4e-10 | Click |
18 | complement(4394587..4395111) | PHAGE_Burkho_BcepMu: gp40; STMUK_4197; phage(gi48696950) | 1e-68 | Click |
19 | complement(4395111..4396538) | PHAGE_Burkho_BcepMu: gp39; STMUK_4198; phage(gi48696949) | 0.0 | Click |
20 | complement(4396528..4396725) | PHAGE_Burkho_BcepMu: gp38; STMUK_4199; phage(gi48696948) | 2e-08 | Click |
21 | complement(4396722..4397177) | PHAGE_Burkho_BcepMu: gp37; STMUK_4200; phage(gi48696947) | 2e-13 | Click |
22 | complement(4397337..4397651) | PHAGE_Burkho_BcepMu: gp25; STMUK_4201; phage(gi48696935) | 3e-23 | Click |
23 | complement(4397664..4398269) | PHAGE_Burkho_BcepMu: gp22; STMUK_4202; phage(gi48696932) | 5e-56 | Click |
24 | complement(4398272..4398559) | PHAGE_Burkho_BcepMu: gp21; STMUK_4203; phage(gi48696931) | 7e-21 | Click |
25 | 4399279..4399482 | PHAGE_Burkho_BcepMu: gp01; STMUK_4204; phage(gi48696911) | 2e-15 | Click |