Definition Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1, complete genome.
Accession CP002614
Length 4,817,868
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 9 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 969488..969499  attL    GAAGATGACGAT  N/A  Click
2 973478..975136  PHAGE_Entero_P2: Old; STMUK_0907; phage(gi9630369)  8e-06  Click
3 complement(975133..976101)  VirK-like protein; STMUK_0908  N/A  Click
4 976229..977347  PHAGE_Cronob_ENT47670: putative tail protein; STMUK_0909; phage(gi431810494)  4e-05  Click
5 977344..979290  PHAGE_Plankt_PaV_LD: ABC transporter; STMUK_0910; phage(gi371496158)  5e-41  Click
6 complement(979420..979641)  PHAGE_Lactoc_bIL312: Csp; STMUK_0911; phage(gi13095918)  5e-14  Click
7 979965..980285  PHAGE_Cronob_vB_CsaM_GAP32: ATP-dependent Clp protease; STMUK_0912; phage(gi414087232)  3e-05  Click
8 980316..982592  PROPHAGE_Escher_EDL933: ATP-dependent Clp protease ATP-binding subunit; STMUK_0913; phage(gi15800640)  0.0  Click
9 982784..983242  PHAGE_Hypert_2: IS element Dka2 orfA; STMUK_0914; phage(gi300116744)  4e-16  Click
10 complement(983705..984388)  PROPHAGE_Escher_CFT073: transposase insF; STMUK_0915; phage(gi26249410)  1e-31  Click
11 996961..996972  attR    GAAGATGACGAT  N/A  Click
Region 2, total : 55 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1055828..1055842  attL    TTATAAAAATGTAGC  N/A  Click
2 complement(1055877..1057169)  PHAGE_Gifsy_2: bacteriophage integrase; STMUK_0971; phage(gi169257268)  0.0  Click
3 complement(1057214..1057462)  PHAGE_Gifsy_2: bacteriophage excisionase; STMUK_0972; phage(gi169257269)  1e-43  Click
4 complement(1057503..1057742)  PHAGE_Gifsy_2: hypothetical protein STM1007.Gifsy2; STMUK_0973; phage(gi169257270)  7e-40  Click
5 complement(1057785..1058942)  PHAGE_Gifsy_2: conserved hypothetical bacteriophage protein; STMUK_0974; phage(gi169257271)  0.0  Click
6 complement(1058905..1061790)  PHAGE_Gifsy_2: putatitive bacteriophage exodeoxyribonuclease VIII; STMUK_0975; phage(gi169257272)  0.0  Click
7 complement(1061917..1062216)  PHAGE_Gifsy_2: hypothetical protein STM1010.Gifsy2; STMUK_0976; phage(gi169257273)  3e-40  Click
8 complement(1062389..1062649)  PHAGE_Gifsy_2: hypothetical protein STM1010.2n.Gifsy2; STMUK_0977; phage(gi169257275)  2e-15  Click
9 complement(1062699..1063109)  PHAGE_Gifsy_2: putative bacteriophage regulatory protein; repressor; Lambda gpCI analog; STMUK_0978; phage(gi169257276)  6e-74  Click
10 1063434..1063808  PHAGE_Gifsy_2: bacteriophage transcriptional activator; Lambda gpCII analog; STMUK_0979; phage(gi169257278)  1e-54  Click
11 1063893..1064876  PHAGE_Gifsy_2: bacteriophage DNA replication protein; Lambda gpo homolog; STMUK_0980; phage(gi169257279)  0.0  Click
12 1064879..1065628  PHAGE_Gifsy_2: bacteriophage DNA replication protein; STMUK_0981; phage(gi169257280)  4e-141  Click
13 1065639..1065986  PHAGE_Gifsy_2: hypothetical protein STM1016.Gifsy2; STMUK_0982; phage(gi169257281)  5e-60  Click
14 1065983..1066294  PHAGE_Gifsy_2: conserved hypothetical bacteriophage protein; STMUK_0983; phage(gi169257282)  7e-53  Click
15 1066372..1066662  PHAGE_Gifsy_2: hypothetical protein STM1019.1n.Gifsy2; STMUK_0984; phage(gi169257283)  8e-47  Click
16 1066954..1067187  PHAGE_Gifsy_2: bacteriophage damage-inducible protein DinI; STMUK_0985; phage(gi169257284)  8e-39  Click
17 1067603..1068205  PHAGE_Gifsy_2: hypothetical protein STM1020.Gifsy2; STMUK_0986; phage(gi169257286)  3e-111  Click
18 1068205..1068411  PHAGE_Gifsy_2: hypothetical protein STM1021.1n.Gifsy2; STMUK_0987; phage(gi169257287)  1e-35  Click
19 1068414..1069025  PHAGE_Gifsy_2: NinG; STMUK_0988; phage(gi169257288)  1e-116  Click
20 1069158..1069955  PHAGE_Gifsy_2: prophage antitermination protein; late gene regulator; Lamba gpQ homolog; STMUK_0989; phage(gi169257290)  7e-155  Click
21 1070022..1070339  PHAGE_Gifsy_2: hypothetical protein STM1023.Gifsy2; STMUK_0990; phage(gi169257291)  1e-58  Click
22 1070513..1070638  PHAGE_Gifsy_2: hypothetical protein STM1024.Gifsy2; STMUK_0991; phage(gi169257292)  1e-17  Click
23 complement(1070774..1071223)  PHAGE_Gifsy_2: hypothetical protein STM1025.Gifsy2; STMUK_0992; phage(gi169257293)  6e-84  Click
24 complement(1071584..1072096)  PHAGE_Gifsy_2: bacteriophage virulence determinant; GtgA; STMUK_0993; phage(gi169257294)  6e-98  Click
25 1072627..1072875  PHAGE_Gifsy_2: bacteriophage lysis protein; holin; STMUK_0994; phage(gi169257295)  5e-41  Click
26 1072859..1073311  PHAGE_Gifsy_2: bacteriophage lysis protein; endolysin; lysozyme; STMUK_0995; phage(gi169257296)  2e-83  Click
27 1073329..1073808  PHAGE_Gifsy_2: bacteriophage lysis protein; Lambda gpRz homolog; STMUK_0996; phage(gi169257297)  1e-86  Click
28 1074016..1074549  PHAGE_Gifsy_2: bacteriophage DNA packaging protein; terminase, small subunit; STMUK_0997; phage(gi169257298)  1e-95  Click
29 1074506..1076644  PHAGE_Gifsy_2: bacteriophage DNA packaging protein; terminase, large subunit; STMUK_0998; phage(gi169257299)  0.0  Click
30 1076641..1076847  PHAGE_Gifsy_2: conserved hypothetical bacteriophage protein; STMUK_0999; phage(gi169257300)  1e-31  Click
31 1077078..1078391  PHAGE_Gifsy_2: bacteriophage portal protein; STMUK_1000; phage(gi169257301)  0.0  Click
32 1078315..1080396  PHAGE_Gifsy_2: bacteriophage Clp protease involved in capsid processing; STMUK_1001; phage(gi169257302)  0.0  Click
33 1080487..1080810  PHAGE_Gifsy_2: conserved hypothetical bacteriophage protein; STMUK_1002; phage(gi169257303)  3e-55  Click
34 1080803..1081102  PHAGE_Gifsy_2: conserved hypothetical bacteriophage protein; STMUK_1003; phage(gi169257304)  6e-52  Click
35 1081083..1081649  PHAGE_Gifsy_2: bacteriophage morphogenesis protein; Lambda gpZ homolog; STMUK_1004; phage(gi169257305)  3e-103  Click
36 1081646..1082047  PHAGE_Gifsy_2: bacteriophage tail shaft stabilization protein; Lambda gpU homolog; STMUK_1005; phage(gi169257306)  3e-72  Click
37 1082059..1082808  PHAGE_Gifsy_2: bacteriophage major tail protein; Lambda gpV homolog; STMUK_1006; phage(gi169257307)  2e-141  Click
38 1082854..1083252  PHAGE_Gifsy_2: bacteriophage tail assembly chaperone; Lambda gpG homolog; STMUK_1007; phage(gi169257308)  8e-70  Click
39 1083249..1083578  PHAGE_Gifsy_2: bacteriophage tail assembly chapterone - part of G+G' frameshift hybrid protein ; Lambda gpT homolog; STMUK_1008; phage(gi169257309)  6e-57  Click
40 1083658..1086645  PHAGE_Gifsy_2: bacteriophage tail tape measure protein; minor tail protein; Lambda gpH homolog; STMUK_1009; phage(gi169257310)  0.0  Click
41 1086642..1086974  PHAGE_Gifsy_2: bacteriophage tail tip assembly protein; Lambda gpM homolog; STMUK_1010; phage(gi169257311)  2e-61  Click
42 1087073..1087570  PHAGE_Gifsy_2: bacteriophage virulence determinant; Lom homolog; STMUK_1011; phage(gi169257312)  3e-93  Click
43 complement(1087687..1088220)  PHAGE_Gifsy_2: bacteriophage virulence determinant; superoxide dismutase precursor; STMUK_1012; phage(gi169257313)  3e-102  Click
44 1088310..1089005  PHAGE_Gifsy_2: bacteriophage tail tip assembly protein; Lambda gpL homolog; STMUK_1013; phage(gi169257314)  1e-135  Click
45 1089015..1089752  PHAGE_Gifsy_2: bacteriophage tail tip assembly protein; Lambda gpK homolog; STMUK_1014; phage(gi169257315)  3e-152  Click
46 1089650..1090354  PHAGE_Gifsy_2: bacteriophage tail tip assembly protein; Lambda gpI homolog; STMUK_1015; phage(gi169257316)  5e-129  Click
47 1090426..1093776  PHAGE_Gifsy_2: bacteriophage tail fiber (host specificity) protein; Lambda gp J homolog; STMUK_1016; phage(gi169257317)  0.0  Click
48 1093815..1094057  PHAGE_Gifsy_2: hypothetical protein STM1049.2n.Gifsy2; STMUK_1017; phage(gi169257319)  3e-40  Click
49 1094111..1096549  PHAGE_Gifsy_2: bacteriophage side tail fiber protein; Lambda gpStf (gpN) homolog; STMUK_1018; phage(gi169257320)  0.0  Click
50 1096549..1097130  PHAGE_Gifsy_2: bacteriophage side tail fiber assembly protein; Lambda gpTfa analog; STMUK_1019; phage(gi169257321)  3e-111  Click
51 1097606..1098574  PHAGE_Gifsy_2: prophage virulence determinant; secreted effector protein; STMUK_1020; phage(gi169257322)  0.0  Click
52 1098842..1099090  PHAGE_Stx2_c_1717: transposase; STMUK_1021; phage(gi209447153)  3e-26  Click
53 complement(1099222..1099848)  PHAGE_Pseudo_F116: hypothetical protein F116p67; STMUK_1022; phage(gi56692976)  7e-31  Click
54 complement(1099917..1100216)  hypothetical protein; STMUK_1023  N/A  Click
55 complement(1100201..1100887)  hypothetical protein; STMUK_1024  N/A  Click
56 complement(1101158..1101349)  PHAGE_Entero_mEp390: DinI-like family protein; STMUK_1025; phage(gi428782688)  6e-25  Click
57 1101655..1101669  attR    TTATAAAAATGTAGC  N/A  Click
Region 3, total : 22 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1917431..1917799  PHAGE_Entero_mEp235: integrase; STMUK_1837; phage(gi428781836)  5e-20  Click
2 1917934..1917956  attL    AAAAAGAGACCGAATACGATTCC  N/A  Click
3 1919103..1920017  integral membrane protein; STMUK_1838  N/A  Click
4 1920150..1920308  putative inner membrane protein; STMUK_1839  N/A  Click
5 1920318..1920932  putative inner membrane protein; STMUK_1840  N/A  Click
6 complement(1921259..1921384)  PHAGE_Salmon_ST64B: DNA invertase pin protein; STMUK_1841; phage(gi23505471)  2e-08  Click
7 complement(1921381..1921557)  hypothetical protein; STMUK_1842  N/A  Click
8 1922104..1922262  hypothetical protein; STMUK_1843  N/A  Click
9 1922775..1922975  PHAGE_Gifsy_1: PagK-like protein; STMUK_1844; phage(gi169257211)  3e-34  Click
10 complement(1923072..1923953)  PHAGE_Salmon_1: putative bacteriophage tail assembly protein; STMUK_1845; phage(gi169257205)  4e-73  Click
11 complement(1924108..1924371)  PHAGE_Salmon_1: bacteriophage terminase, small subunit; STMUK_1846; phage(gi169257184)  7e-43  Click
12 1924679..1924846  lytic enzyme; STMUK_1847  N/A  Click
13 complement(1925103..1925636)  PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; STMUK_1848; phage(gi16765210)  5e-95  Click
14 complement(1925690..1925977)  PHAGE_Salmon_1: putative bacteriophage endolysin; STMUK_1849; phage(gi169257182)  7e-30  Click
15 1926110..1926604  PHAGE_Gifsy_2: putatitive bacteriophage exodeoxyribonuclease VIII; STMUK_1850; phage(gi169257272)  1e-16  Click
16 1926622..1927518  PHAGE_Entero_mEp235: integrase; STMUK_1851; phage(gi428781836)  6e-68  Click
17 1927649..1927671  attR    AAAAAGAGACCGAATACGATTCC  N/A  Click
18 complement(1927715..1927834)  putative cytoplasmic protein; STMUK_1852  N/A  Click
19 complement(1927892..1928245)  PHAGE_Entero_PsP3: gp28; STMUK_1853; phage(gi41057381)  4e-08  Click
20 complement(1928262..1929137)  putative inner membrane protein; STMUK_1854  N/A  Click
21 complement(1929138..1929512)  hypothetical protein; STMUK_1855  N/A  Click
22 1929650..1929880  PHAGE_Pectob_ZF40: putative DNA polymerase; STMUK_1856; phage(gi422936677)  6e-17  Click
23 1929988..1930644  putative amidohydrolase; STMUK_1857  N/A  Click
24 1930668..1931366  PHAGE_Cronob_vB_CsaM_GAP32: putative DNA polymerase III epsilon subunit; STMUK_1858; phage(gi414087193)  2e-15  Click
Region 4, total : 59 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2038630..2038641  attL    CTAAAATCTGGC  N/A  Click
2 complement(2038822..2039034)  PHAGE_Lactoc_bIL312: Csp; STMUK_1974; phage(gi13095918)  1e-16  Click
3 complement(2039489..2040757)  PHAGE_Salmon_vB_SosS_Oslo: error-prone lesion bypass DNA polymerase V; STMUK_1975; phage(gi399528790)  0.0  Click
4 complement(2040760..2041179)  PHAGE_Salmon_vB_SosS_Oslo: errror-prone repair protein UmuD; STMUK_1976; phage(gi399528789)  1e-31  Click
5 complement(2041306..2041467)  putative cytoplasmic protein; STMUK_1977  N/A  Click
6 2041817..2041831  attL    CGGTTTTCGAGACCG  N/A  Click
7 complement(2042098..2042319)  PHAGE_Salmon_ST64B: DNA invertase pin protein; STMUK_1978; phage(gi23505471)  7e-38  Click
8 2042532..2043539  PHAGE_Salmon_ST64B: hypothetical protein sb26; STMUK_1979; phage(gi23505470)  0.0  Click
9 complement(2043540..2043689)  PHAGE_Erwini_ENT90: tail sheath protein; STMUK_1980; phage(gi431810939)  2e-05  Click
10 complement(2043824..2044393)  PHAGE_Salmon_ST64B: Probable tail fiber assembly protein; STMUK_1981; phage(gi23505469)  2e-109  Click
11 complement(2044393..2045955)  PHAGE_Salmon_ST64B: tail protein; STMUK_1982; phage(gi23505468)  0.0  Click
12 complement(2045942..2046529)  PHAGE_Salmon_ST64B: putative tail protein; STMUK_1983; phage(gi23505467)  2e-115  Click
13 complement(2046532..2047053)  PHAGE_Salmon_ST64B: putative tail protein; STMUK_1984; phage(gi23505466)  1e-96  Click
14 complement(2047088..2047612)  PHAGE_Salmon_ST64B: putative head assembly protein; STMUK_1985; phage(gi23505465)  2e-97  Click
15 complement(2047605..2048018)  PHAGE_Salmon_ST64B: putative tail protein; STMUK_1986; phage(gi23505464)  2e-77  Click
16 complement(2048023..2048556)  PHAGE_Salmon_ST64B: putative base plate assembly protein; STMUK_1987; phage(gi23505463)  3e-99  Click
17 complement(2048556..2049614)  PHAGE_Salmon_ST64B: Tail protein; STMUK_1988; phage(gi23505462)  0.0  Click
18 complement(2049611..2050951)  PHAGE_Salmon_ST64B: tail/DNA circulation protein; STMUK_1989; phage(gi23505461)  0.0  Click
19 complement(2050985..2052913)  PHAGE_Salmon_ST64B: tail protein; STMUK_1990; phage(gi23505460)  0.0  Click
20 complement(2052998..2053324)  PHAGE_Salmon_ST64B: hypothetical protein sb15; STMUK_1991; phage(gi23505501)  1e-55  Click
21 complement(2053321..2053677)  PHAGE_Salmon_ST64B: Tail tube protein; STMUK_1992; phage(gi23505459)  8e-65  Click
22 complement(2053677..2055173)  PHAGE_Salmon_ST64B: Tail Sheath protein; STMUK_1993; phage(gi23505458)  0.0  Click
23 complement(2055163..2055327)  PHAGE_Salmon_ST64B: hypothetical protein sb12; STMUK_1994; phage(gi23505457)  9e-27  Click
24 complement(2055331..2055891)  PHAGE_Salmon_ST64B: hypothetical protein sb11; STMUK_1995; phage(gi23505456)  3e-107  Click
25 complement(2055888..2056400)  PHAGE_Salmon_ST64B: hypothetical protein sb10; STMUK_1996; phage(gi23505455)  3e-97  Click
26 complement(2056372..2056776)  PHAGE_Salmon_ST64B: hypothetical protein sb9; STMUK_1997; phage(gi23505454)  8e-74  Click
27 complement(2056773..2057096)  PHAGE_Salmon_ST64B: hypothetical protein sb8; STMUK_1998; phage(gi23505453)  5e-57  Click
28 complement(2057099..2057299)  PHAGE_Salmon_ST64B: hypothetical protein sb7; STMUK_1999; phage(gi23505452)  2e-31  Click
29 complement(2057350..2058555)  PHAGE_Salmon_ST64B: Major capsid protein precursor; STMUK_2000; phage(gi23505451)  0.0  Click
30 complement(2058570..2059220)  PHAGE_Salmon_ST64B: Pro-head protease; STMUK_2001; phage(gi23505450)  2e-120  Click
31 complement(2059198..2060439)  PHAGE_Salmon_ST64B: Portal Protein; STMUK_2002; phage(gi23505449)  0.0  Click
32 complement(2060439..2060621)  PHAGE_Salmon_ST64B: putative integral membrane protein; STMUK_2003; phage(gi23505448)  1e-29  Click
33 complement(2060633..2062366)  PHAGE_Salmon_ST64B: Terminase large subunit; STMUK_2004; phage(gi23505447)  0.0  Click
34 complement(2062363..2062857)  PHAGE_Salmon_ST64B: terminase small subunit; STMUK_2005; phage(gi23505446)  9e-93  Click
35 complement(2063916..2064335)  PHAGE_Salmon_ST64B: hypothetical protein sb54; STMUK_2006; phage(gi23505498)  1e-73  Click
36 complement(2064548..2065033)  PHAGE_Salmon_ST64B: lysis protein; STMUK_2007; phage(gi23505497)  2e-86  Click
37 complement(2065647..2065991)  PHAGE_Salmon_ST64B: lysis protein (holin); STMUK_2008; phage(gi23505495)  5e-46  Click
38 complement(2066517..2066876)  PHAGE_Salmon_ST64B: hypothetical protein sb50; STMUK_2009; phage(gi23505494)  4e-67  Click
39 complement(2066907..2067530)  PHAGE_Salmon_ST64B: hypothetical protein sb49; STMUK_2010; phage(gi23505493)  3e-120  Click
40 complement(2067541..2068536)  PHAGE_Salmon_ST64B: hypothetical protein sb47; STMUK_2011; phage(gi23505491)  2e-134  Click
41 complement(2068538..2069398)  PHAGE_Salmon_ST64B: hypothetical protein sb46; STMUK_2012; phage(gi23505490)  8e-165  Click
42 complement(2069415..2069804)  PHAGE_Salmon_ST64B: holiday-junction resolvase; STMUK_2013; phage(gi23505489)  1e-71  Click
43 complement(2069801..2070694)  PHAGE_Salmon_ST64B: putative DNA methyltransferase; STMUK_2014; phage(gi23505488)  3e-175  Click
44 complement(2071178..2071996)  PHAGE_Salmon_ST64B: putative replication protein; STMUK_2015; phage(gi23505486)  5e-158  Click
45 complement(2071993..2072217)  PHAGE_Entero_mEp460: hypothetical protein; STMUK_2016; phage(gi428782358)  1e-35  Click
46 complement(2072214..2073371)  PHAGE_Salmon_ST64B: putative antirepressor; STMUK_2017; phage(gi23505485)  0.0  Click
47 complement(2073368..2073922)  PHAGE_Salmon_ST64B: hypothetical protein sb40; STMUK_2018; phage(gi23505484)  4e-47  Click
48 complement(2073951..2074175)  PHAGE_Salmon_ST64B: DNA binding protein; STMUK_2019; phage(gi23505483)  2e-36  Click
49 2074273..2074968  PHAGE_Salmon_ST64B: regulatory protein; STMUK_2020; phage(gi23505482)  4e-129  Click
50 2075621..2076154  PHAGE_Salmon_ST64B: hypothetical protein sb37; STMUK_2021; phage(gi23505481)  4e-66  Click
51 2076212..2077039  PHAGE_Salmon_ST64B: hypothetical protein sb36; STMUK_2022; phage(gi23505480)  2e-154  Click
52 2077176..2077715  PHAGE_Salmon_ST64B: hypothetical protein sb35; STMUK_2023; phage(gi23505479)  7e-100  Click
53 2078013..2078528  PHAGE_Salmon_ST64B: hypothetical protein sb33; STMUK_2024; phage(gi23505477)  5e-98  Click
54 2078525..2079142  PHAGE_Salmon_ST64B: hypothetical protein sb32; STMUK_2025; phage(gi23505476)  2e-116  Click
55 2079139..2079972  PHAGE_Salmon_ST64B: hypothetical protein sb31; STMUK_2026; phage(gi23505475)  6e-164  Click
56 2079976..2080545  PHAGE_Salmon_ST64B: Endodeoxyribonuclease; STMUK_2027; phage(gi23505474)  8e-110  Click
57 2080570..2080812  PHAGE_Salmon_ST64B: hypothetical protein sb29; STMUK_2028; phage(gi23505473)  2e-41  Click
58 2080814..2081803  PHAGE_Salmon_ST64B: Integrase protein; STMUK_2029; phage(gi23505472)  0.0  Click
59 complement(2081921..2082007)  tRNA  N/A  Click
60 2081964..2081978  attR    CGGTTTTCGAGACCG  N/A  Click
61 2082095..2082892  putative inner membrane protein; STMUK_2031  N/A  Click
62 2082994..2083066  tRNA  N/A  Click
63 2083964..2084036  tRNA  N/A  Click
64 2084202..2084675  PHAGE_Entero_phiV10: hypothetical protein PhiV10p09; STMUK_2034; phage(gi89152430)  5e-45  Click
65 2085150..2085848  PROPHAGE_Salmon_LT2: integrase; STMUK_2035; phage(gi16766072)  2e-39  Click
66 2093897..2093908  attR    CTAAAATCTGGC  N/A  Click
Region 5, total : 16 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(2330706..2331209)  PHAGE_Entero_P1: HumD; STMUK_2260; phage(gi46401723)  7e-51  Click
2 2331237..2331527  PHAGE_Klebsi_phiKO2: Gp22; STMUK_2261; phage(gi46402108)  1e-25  Click
3 2331875..2333704  PHAGE_Salmon_c341: O-polysaccharide acetyltransferase protein; STMUK_2262; phage(gi255252697)  5e-68  Click
4 complement(2333758..2334201)  PHAGE_Entero_mEp213: tail fiber assembly protein; STMUK_2263; phage(gi428782612)  5e-15  Click
5 complement(2334579..2335106)  PHAGE_Sodali_phiSG1: putative phage tail fiber assembly protein; STMUK_2264; phage(gi89886004)  1e-13  Click
6 complement(2335109..2336350)  PHAGE_Entero_SfV: hypothetical protein SfVp21; STMUK_2265; phage(gi19548989)  2e-20  Click
7 complement(2336411..2336929)  PHAGE_Entero_SfV: capsid protease; STMUK_2266; phage(gi19548994)  7e-76  Click
8 complement(2336943..2337272)  PHAGE_Entero_SfV: holin; STMUK_2267; phage(gi19549036)  9e-38  Click
9 2337569..2338900  hypothetical protein; STMUK_2268  N/A  Click
10 complement(2338929..2339297)  PHAGE_Entero_cdtI: antitermination protein Q; STMUK_2269; phage(gi148609434)  6e-54  Click
11 complement(2339312..2340301)  PHAGE_Entero_SfV: hypothetical protein SfVp45; STMUK_2270; phage(gi19549032)  2e-159  Click
12 complement(2340309..2340539)  PHAGE_Entero_SfV: hypothetical protein SfVp44; STMUK_2271; phage(gi19549031)  4e-35  Click
13 complement(2340630..2342996)  PHAGE_Gifsy_2: prophage virulence determinant; secreted effector protein; STMUK_2272; phage(gi169257322)  1e-73  Click
14 complement(2343165..2343368)  putative phage tail fiber protein; STMUK_2273  N/A  Click
15 complement(2343665..2344456)  PHAGE_Gifsy_2: bacteriophage side tail fiber protein; Lambda gpStf (gpN) homolog; STMUK_2274; phage(gi169257320)  3e-72  Click
16 2344759..2344962  PHAGE_Entero_HK225: DNA damage-inducible protein; STMUK_2275; phage(gi428782403)  9e-05  Click
Region 6, total : 55 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2728740..2730233  PHAGE_Gifsy_1: leucine-rich repeat protein; STMUK_2616; phage(gi169257209)  0.0  Click
2 2731090..2731635  PHAGE_Gifsy_1: hypothetical protein STM2585.Gifsy1; STMUK_2617; phage(gi169257210)  2e-101  Click
3 2731820..2731831  attL    ACAAAAACCATG  N/A  Click
4 2732747..2732974  PHAGE_Gifsy_1: PagK-like protein; STMUK_2618; phage(gi169257211)  8e-41  Click
5 complement(2733071..2733649)  PHAGE_Gifsy_1: bacteriophage side tail fiber assembly factor & structural component; Lambda gpTfa homolog; STMUK_2619; phage(gi169257212)  1e-110  Click
6 complement(2733639..2734463)  PHAGE_Gifsy_1: conserved hypothetical protein; contains pfam01661, Macro, Macro domain; STMUK_2620; phage(gi169257213)  2e-161  Click
7 complement(2734460..2736832)  PHAGE_Gifsy_1: bacteriophage side tail fiber protein; Lambda gpSft (gpN) homolog; STMUK_2621; phage(gi169257214)  0.0  Click
8 complement(2736886..2737128)  PHAGE_Gifsy_1: hypothetical protein STM2589.1n.Gifsy1; STMUK_2622; phage(gi169257215)  4e-40  Click
9 complement(2737167..2740529)  PHAGE_Gifsy_1: bacteriophage host specificity protein; tail fiber; Lambda gpJ homolog; STMUK_2623; phage(gi169257216)  0.0  Click
10 complement(2740591..2741238)  PHAGE_Gifsy_1: bacteriophage tail tip assembly protein; Lambda gpI homolog; STMUK_2624; phage(gi169257217)  6e-121  Click
11 complement(2741136..2741735)  PHAGE_Gifsy_1: bacteriophage tail tip assembly protein; Lambda gpK homolog; STMUK_2625; phage(gi169257218)  5e-124  Click
12 complement(2741880..2742578)  PHAGE_Gifsy_1: bacteriophage tail tip assembly protein; Lambda gpL homolog; STMUK_2626; phage(gi169257219)  7e-136  Click
13 complement(2742588..2742917)  PHAGE_Gifsy_1: bacteriophage tail tip assembly protein; Lambda gpM homolog; STMUK_2627; phage(gi169257220)  2e-61  Click
14 complement(2742920..2746015)  PHAGE_Gifsy_1: bacteriophage tail tape measure protein; minor tail protein; Lambda gpH homolog; STMUK_2628; phage(gi169257221)  0.0  Click
15 complement(2745987..2746325)  PHAGE_Gifsy_1: part of bacteriophage tail assembly chaperone gpG by translational frameshifting; Lambda gpT homolog; STMUK_2629; phage(gi169257222)  3e-61  Click
16 complement(2746322..2746717)  PHAGE_Gifsy_1: bacteriophage tail assembly chaperone; Lambda gpG homolog; STMUK_2630; phage(gi169257223)  2e-70  Click
17 complement(2746768..2747514)  PHAGE_Gifsy_1: bacteriophage major tail subunit; Lambda gpV homolog; STMUK_2631; phage(gi169257224)  5e-138  Click
18 complement(2747522..2747923)  PHAGE_Gifsy_1: bacteriophage tail shaft stabilization protein; Lambda gpU homolog; STMUK_2632; phage(gi169257225)  2e-73  Click
19 2747912..2749162  PHAGE_Gifsy_1: transposase; STMUK_2633; phage(gi169257226)  0.0  Click
20 complement(2749211..2749789)  PHAGE_Gifsy_1: bacteriophage head-tail assembly protein; Lambda gpZ homolog; STMUK_2634; phage(gi169257227)  7e-104  Click
21 complement(2749817..2750200)  PHAGE_Gifsy_1: bacteriophage minor capsid protein; forms tail attachment site on head; Lambda FII homolog; STMUK_2635; phage(gi169257228)  1e-68  Click
22 complement(2750211..2750570)  PHAGE_Gifsy_1: bacteriophage accessory DNA packaging protein; Lambda FI homolog; STMUK_2636; phage(gi169257229)  4e-62  Click
23 complement(2750628..2751656)  PHAGE_Gifsy_1: bacteriophage major capsid protein; Lambda gpE homolog; STMUK_2637; phage(gi169257230)  0.0  Click
24 complement(2751711..2752058)  PHAGE_Gifsy_1: bacteriophage head decoration protein; Lambda gpD homolog; STMUK_2638; phage(gi169257231)  2e-61  Click
25 complement(2752071..2753567)  PHAGE_Gifsy_1: bacteriophage prohead protease; Lambda gpC homolog; STMUK_2639; phage(gi169257232)  0.0  Click
26 complement(2753557..2755137)  PHAGE_Gifsy_1: bacteriophage portal protein; Lambda gpB homolog; STMUK_2640; phage(gi169257233)  0.0  Click
27 complement(2755134..2755337)  PHAGE_Gifsy_1: bacteriophage head-to-tail joining protein; adapter between portal and gpFII; Lambda gpW homolog; STMUK_2641; phage(gi169257234)  2e-31  Click
28 complement(2755321..2757252)  PHAGE_Gifsy_1: DNA packaging protein; large terminase subunit; Lambda gpA homolog; STMUK_2642; phage(gi169257235)  0.0  Click
29 complement(2757224..2757769)  PHAGE_Gifsy_1: DNA packaging protein; small terminase subunit; Lambda Nu1 homolog; STMUK_2643; phage(gi169257236)  2e-87  Click
30 2758056..2758457  PHAGE_Gifsy_1: hypothetical protein STM2610.Gifsy1; STMUK_2644; phage(gi169257237)  9e-72  Click
31 complement(2758693..2759166)  PHAGE_Gifsy_1: bacteriophage lysis protein; Rz; STMUK_2645; phage(gi169257238)  6e-80  Click
32 complement(2759163..2759615)  PHAGE_Gifsy_1: bacteriophage lysin protein; endolysin; STMUK_2646; phage(gi169257239)  3e-81  Click
33 complement(2759599..2759928)  PHAGE_Gifsy_1: bacteriophage lysis protein; holin; STMUK_2647; phage(gi169257240)  4e-58  Click
34 2760204..2760890  PHAGE_Gifsy_1: virulence protein GogA; STMUK_2648; phage(gi169257241)  3e-133  Click
35 complement(2761105..2761293)  PHAGE_Gifsy_1: hypothetical protein STM2615.1n.Gifsy1; STMUK_2649; phage(gi169257242)  2e-33  Click
36 complement(2761383..2761456)  tRNA  N/A  Click
37 complement(2761800..2762363)  PHAGE_Gifsy_1: conserved hypothetical bacteriophage protein; STMUK_2651; phage(gi169257243)  1e-103  Click
38 complement(2762636..2763313)  PHAGE_Gifsy_1: bacteriophage antiterminator protein Q; STMUK_2652; phage(gi169257244)  3e-130  Click
39 complement(2763310..2763450)  PHAGE_Gifsy_1: conserved hypothetical bacteriophage protein; STMUK_2653; phage(gi169257245)  7e-21  Click
40 complement(2763447..2764058)  PHAGE_Gifsy_1: NinG; STMUK_2654; phage(gi169257246)  5e-117  Click
41 complement(2764267..2764869)  PHAGE_Gifsy_1: conserved hypothetical bacteriophage protein; STMUK_2655; phage(gi169257248)  2e-111  Click
42 complement(2765269..2765502)  PHAGE_Gifsy_1: bacteriophage putative DNA damage-inducible protein; DinI homolog; STMUK_2656; phage(gi169257250)  2e-38  Click
43 2765772..2766764  hypothetical protein; STMUK_2657  N/A  Click
44 complement(2766791..2767309)  PHAGE_Gifsy_1: conserved hypothetical bacteriophage protein; STMUK_2658; phage(gi169257252)  8e-31  Click
45 complement(2767306..2767653)  PHAGE_Gifsy_1: hypothetical protein STM2624.Gifsy1; STMUK_2659; phage(gi169257253)  6e-53  Click
46 complement(2767664..2768413)  PHAGE_Gifsy_1: bacteriophage DNA replication protein; DnaC homolog; STMUK_2660; phage(gi169257254)  9e-141  Click
47 complement(2768416..2769435)  PHAGE_Gifsy_1: bacteriophage replication protein O; STMUK_2661; phage(gi169257255)  2e-171  Click
48 complement(2769589..2769909)  PHAGE_Gifsy_1: probable regulatory protein; transcriptional activator; lambda CII analog; STMUK_2662; phage(gi169257256)  1e-54  Click
49 2770238..2770651  PHAGE_Entero_mEp237: prophage repressor; STMUK_2663; phage(gi435439304)  2e-44  Click
50 2770794..2771903  PHAGE_Salmon_ST160: regulatory protein; STMUK_2664; phage(gi318065923)  6e-120  Click
51 2772384..2772542  PHAGE_Gifsy_1: hypothetical protein STM2630.Gifsy1; STMUK_2666; phage(gi169257260)  6e-25  Click
52 2772564..2772914  PHAGE_Gifsy_1: hypothetical protein STM2631.Gifsy1; STMUK_2667; phage(gi169257261)  1e-62  Click
53 2773041..2775968  PHAGE_Gifsy_1: bacteriophage exodeoxyribonuclease VIII-like protein; STMUK_2668; phage(gi169257262)  0.0  Click
54 2775979..2777088  PHAGE_Gifsy_1: RecT; STMUK_2669; phage(gi169257263)  0.0  Click
55 2777131..2777370  PHAGE_Gifsy_1: hypothetical protein STM2634.Gifsy1; STMUK_2670; phage(gi169257264)  1e-38  Click
56 2777411..2777695  PHAGE_Gifsy_1: hypothetical protein STM2635.Gifsy1; STMUK_2671; phage(gi169257265)  6e-50  Click
57 complement(2777673..2778902)  PHAGE_Gifsy_1: bacteriophage integrase protein; STMUK_2672; phage(gi169257266)  0.0  Click
58 2778976..2778987  attR    ACAAAAACCATG  N/A  Click
Region 7, total : 15 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2868318..2868330  attL    AATGCTATTTTTA  N/A  Click
2 2868917..2869792  PROPHAGE_Salmon_LT2: integrase; STMUK_2748; phage(gi16766072)  4e-168  Click
3 2869958..2871832  putative inner membrane protein; STMUK_2749  N/A  Click
4 complement(2872092..2873375)  putative inner membrane protein; STMUK_2750  N/A  Click
5 2873953..2874549  PROPHAGE_Entero_Fels-2: integrase-like protein; STMUK_2751; phage(gi16766052)  3e-52  Click
6 complement(2875003..2875332)  PROPHAGE_Xantho_33913: ISxcC1 transposase; STMUK_2752; phage(gi21231060)  7e-34  Click
7 complement(2875554..2875820)  PROPHAGE_Salmon_LT2: transposase; STMUK_2753; phage(gi16766077)  7e-45  Click
8 complement(2876273..2876911)  putative cytoplasmic protein; STMUK_2754  N/A  Click
9 complement(2876908..2878890)  putative DNA/RNA helicase; STMUK_2755  N/A  Click
10 2879169..2879468  PROPHAGE_Escher_MG1655: IS3 transposase A; STMUK_2756; phage(gi226524700)  2e-41  Click
11 2879465..2880331  PROPHAGE_Escher_MG1655: IS3 transposase B; STMUK_2757; phage(gi16128284)  3e-145  Click
12 complement(2881111..2881650)  PHAGE_Salmon_SSU5: putative repressor of phase 1 flagellin; STMUK_2758; phage(gi390013956)  9e-13  Click
13 complement(2881718..2883238)  PHAGE_Escher_phiKT: tail fiber protein; STMUK_2759; phage(gi422936632)  1e-07  Click
14 2883330..2883902  PHAGE_Escher_D108: G region invertase; STMUK_2760; phage(gi281199698)  4e-67  Click
15 2884865..2885980  putative glycosyl transferase; STMUK_2761  N/A  Click
16 2886061..2889714  PHAGE_Bacill_SPBc2: ABC transporter; STMUK_2762; phage(gi9630145)  2e-25  Click
17 2899678..2899690  attR    AATGCTATTTTTA  N/A  Click
Region 8, total : 25 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(4379063..4379791)  PHAGE_Entero_P1: PmgQ; STMUK_4180; phage(gi46401711)  7e-34  Click
2 complement(4379988..4380278)  putative inner membrane protein; STMUK_4181  N/A  Click
3 complement(4380527..4380982)  PHAGE_Haemop_SuMu: enoyl-CoA hydratase/carnithine racemase-like protein; STMUK_4182; phage(gi418489075)  2e-24  Click
4 complement(4380979..4381584)  putative cytoplasmic protein; STMUK_4183  N/A  Click
5 complement(4381589..4383334)  PHAGE_Entero_PsP3: gp19; STMUK_4184; phage(gi41057371)  1e-78  Click
6 complement(4383337..4383969)  PHAGE_Burkho_BcepMu: gp51; STMUK_4185; phage(gi48696961)  4e-26  Click
7 complement(4383962..4385077)  PHAGE_Burkho_BcepMu: gp50; STMUK_4186; phage(gi48696960)  2e-105  Click
8 complement(4385068..4385427)  PHAGE_Burkho_BcepMu: gp49; STMUK_4187; phage(gi48696959)  1e-35  Click
9 complement(4385591..4387138)  PHAGE_Salmon_epsilon34: GtrC; putative membrane protein; STMUK_4188; phage(gi221328637)  2e-59  Click
10 complement(4387138..4388067)  PHAGE_Entero_SfV: bactoprenol glucosyltransferase; STMUK_4189; phage(gi19549012)  3e-152  Click
11 complement(4388064..4388426)  PHAGE_Entero_SfV: putative flippase; STMUK_4190; phage(gi19549013)  7e-48  Click
12 complement(4388754..4389476)  PHAGE_Burkho_BcepMu: gp48; STMUK_4191; phage(gi48696958)  2e-39  Click
13 complement(4389486..4390529)  PHAGE_Burkho_BcepMu: gp47; STMUK_4192; phage(gi48696957)  9e-81  Click
14 complement(4390517..4390726)  PHAGE_Burkho_BcepMu: gp46; STMUK_4193; phage(gi48696956)  9e-19  Click
15 complement(4390726..4391679)  PHAGE_Burkho_BcepMu: gp45; STMUK_4194; phage(gi48696955)  1e-45  Click
16 complement(4391679..4394033)  PHAGE_Burkho_BcepMu: gp44; STMUK_4195; phage(gi48696954)  1e-68  Click
17 complement(4394218..4394535)  PHAGE_Burkho_BcepMu: gp41; STMUK_4196; phage(gi48696951)  4e-10  Click
18 complement(4394587..4395111)  PHAGE_Burkho_BcepMu: gp40; STMUK_4197; phage(gi48696950)  1e-68  Click
19 complement(4395111..4396538)  PHAGE_Burkho_BcepMu: gp39; STMUK_4198; phage(gi48696949)  0.0  Click
20 complement(4396528..4396725)  PHAGE_Burkho_BcepMu: gp38; STMUK_4199; phage(gi48696948)  2e-08  Click
21 complement(4396722..4397177)  PHAGE_Burkho_BcepMu: gp37; STMUK_4200; phage(gi48696947)  2e-13  Click
22 complement(4397337..4397651)  PHAGE_Burkho_BcepMu: gp25; STMUK_4201; phage(gi48696935)  3e-23  Click
23 complement(4397664..4398269)  PHAGE_Burkho_BcepMu: gp22; STMUK_4202; phage(gi48696932)  5e-56  Click
24 complement(4398272..4398559)  PHAGE_Burkho_BcepMu: gp21; STMUK_4203; phage(gi48696931)  7e-21  Click
25 4399279..4399482  PHAGE_Burkho_BcepMu: gp01; STMUK_4204; phage(gi48696911)  2e-15  Click