Definition Shewanella putrefaciens 200, complete genome.
Accession CP002457
Length 4,840,251
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 39 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(4200342..4207070)  PHAGE_Yersin_PY54: tail protein; Sput200_3690; phage(gi33770530)  6e-79  Click
2 complement(4207055..4207495)  PHAGE_Yersin_PY54: hypothetical protein PY54p19; Sput200_3691; phage(gi33770528)  1e-19  Click
3 complement(4207464..4208087)  PHAGE_Yersin_PY54: hypothetical protein PY54p17; Sput200_3692; phage(gi33770526)  7e-23  Click
4 complement(4208084..4208686)  PHAGE_Yersin_PY54: hypothetical protein PY54p16; Sput200_3693; phage(gi33770525)  1e-22  Click
5 complement(4208785..4211652)  PHAGE_Pseudo_DMS3: putative tail length tape measure protein; Sput200_3694; phage(gi119953666)  4e-72  Click
6 complement(4211983..4212312)  conserved hypothetical protein; Sput200_3695  N/A  Click
7 complement(4212321..4213229)  PHAGE_Synech_S_CBS1: hypothetical protein; Sput200_3696; phage(gi356870806)  4e-38  Click
8 complement(4213234..4213644)  hypothetical protein; Sput200_3697  N/A  Click
9 complement(4213641..4214060)  PHAGE_Entero_Mu: hypothetical protein Mup36; Sput200_3698; phage(gi9633527)  1e-21  Click
10 complement(4214063..4214578)  PHAGE_Staphy_X2: ORF047; Sput200_3699; phage(gi66394714)  5e-05  Click
11 complement(4214649..4215551)  PHAGE_Pseudo_DMS3: hypothetical protein DMS3-33; Sput200_3700; phage(gi119953658)  5e-90  Click
12 complement(4215559..4216707)  PHAGE_Entero_Mu: putative protease protein; Sput200_3701; phage(gi9633523)  2e-47  Click
13 complement(4216993..4217451)  PHAGE_Rhodob_RcapMu: virion morphogenesis protein; Sput200_3702; phage(gi356870876)  7e-09  Click
14 complement(4217547..4218791)  PHAGE_Rhodob_RcapMu: head morphogenesis protein; Sput200_3703; phage(gi356870875)  1e-44  Click
15 complement(4218791..4220350)  PHAGE_Pseudo_D3112: portal protein; Sput200_3704; phage(gi38229139)  2e-110  Click
16 complement(4220350..4222011)  PHAGE_Entero_Mu: putative portal protein; Sput200_3705; phage(gi9633519)  6e-128  Click
17 complement(4222011..4222580)  PHAGE_Entero_Mu: hypothetical protein Mup27; Sput200_3706; phage(gi9633518)  1e-53  Click
18 complement(4222583..4222879)  PHAGE_Entero_Mu: hypothetical protein Mup26; Sput200_3707; phage(gi9633517)  1e-18  Click
19 complement(4222879..4223214)  conserved hypothetical protein; Sput200_3708  N/A  Click
20 complement(4223211..4223423)  DksA/TraR C4-like protein; Sput200_3709  N/A  Click
21 complement(4223508..4224077)  PHAGE_White__HKU16: spike glycoprotein; Sput200_3710; phage(gi383081736)  7e-05  Click
22 complement(4224074..4224646)  PHAGE_Salmon_vB_SemP_Emek: lysin; Sput200_3711; phage(gi399498856)  3e-20  Click
23 complement(4224636..4224932)  conserved hypothetical protein; Sput200_3712  N/A  Click
24 complement(4225011..4225457)  hypothetical protein; Sput200_3713  N/A  Click
25 complement(4225569..4226015)  PHAGE_Entero_Mu: putative transcription regulator; Sput200_3714; phage(gi9633511)  7e-16  Click
26 complement(4226005..4226535)  PHAGE_Haemop_SuMu: hypothetical protein; Sput200_3715; phage(gi418489048)  8e-26  Click
27 complement(4226532..4227116)  PHAGE_Entero_Mu: hypothetical protein Mup16; Sput200_3716; phage(gi9633506)  2e-21  Click
28 complement(4227116..4227334)  conserved hypothetical protein; Sput200_3717  N/A  Click
29 complement(4227433..4227891)  conserved hypothetical protein; Sput200_3718  N/A  Click
30 complement(4227903..4228103)  conserved hypothetical protein; Sput200_3719  N/A  Click
31 complement(4228194..4228826)  PHAGE_Pseudo_B3: hypothetical protein B3ORF6; Sput200_3720; phage(gi56692574)  3e-49  Click
32 complement(4228837..4229115)  conserved hypothetical protein; Sput200_3721  N/A  Click
33 complement(4229127..4229372)  hypothetical protein; Sput200_3722  N/A  Click
34 complement(4229375..4229587)  conserved hypothetical protein; Sput200_3723  N/A  Click
35 complement(4229630..4230613)  PHAGE_Entero_Mu: DNA transposition protein; Sput200_3724; phage(gi9633513)  9e-83  Click
36 complement(4230656..4232653)  PHAGE_Entero_Mu: transposase; Sput200_3725; phage(gi9633496)  1e-169  Click
37 complement(4232650..4233135)  PHAGE_Burkho_BcepMu: gp13; Sput200_3726; phage(gi48696923)  1e-45  Click
38 complement(4233256..4233558)  PHAGE_Entero_Mu: DNA binding protein ner; Sput200_3727; phage(gi9633495)  1e-14  Click
39 4233719..4234477  PHAGE_Aeromo_phiO18P: putative cI repressor; Sput200_3728; phage(gi148727133)  3e-31  Click
Region 2, total : 46 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 4412014..4412028  attL    GGTAAACTCGCTGCA  N/A  Click
2 complement(4412225..4412857)  PHAGE_Mycoba_Brujita: gp33; Sput200_3943; phage(gi206599577)  7e-05  Click
3 4413678..4413806  hypothetical protein; Sput200_3944  N/A  Click
4 4413796..4414266  hypothetical protein; Sput200_3945  N/A  Click
5 4414595..4414723  hypothetical protein; Sput200_3946  N/A  Click
6 4415048..4415383  conserved hypothetical protein; Sput200_3947  N/A  Click
7 4415380..4415667  conserved hypothetical protein; Sput200_3948  N/A  Click
8 complement(4415862..4416278)  hypothetical protein; Sput200_3949  N/A  Click
9 complement(4416321..4423049)  PHAGE_Yersin_PY54: tail protein; Sput200_3950; phage(gi33770530)  6e-79  Click
10 complement(4423034..4423474)  PHAGE_Yersin_PY54: hypothetical protein PY54p19; Sput200_3951; phage(gi33770528)  1e-19  Click
11 complement(4423443..4424066)  PHAGE_Yersin_PY54: hypothetical protein PY54p17; Sput200_3952; phage(gi33770526)  7e-23  Click
12 complement(4424063..4424665)  PHAGE_Yersin_PY54: hypothetical protein PY54p16; Sput200_3953; phage(gi33770525)  1e-22  Click
13 complement(4424764..4427631)  PHAGE_Pseudo_DMS3: putative tail length tape measure protein; Sput200_3954; phage(gi119953666)  4e-72  Click
14 complement(4427962..4428291)  conserved hypothetical protein; Sput200_3955  N/A  Click
15 complement(4428300..4429208)  PHAGE_Synech_S_CBS1: hypothetical protein; Sput200_3956; phage(gi356870806)  4e-38  Click
16 complement(4429213..4429623)  hypothetical protein; Sput200_3957  N/A  Click
17 complement(4429620..4430039)  PHAGE_Entero_Mu: hypothetical protein Mup36; Sput200_3958; phage(gi9633527)  1e-21  Click
18 complement(4430042..4430557)  PHAGE_Staphy_X2: ORF047; Sput200_3959; phage(gi66394714)  5e-05  Click
19 complement(4430628..4431530)  PHAGE_Pseudo_DMS3: hypothetical protein DMS3-33; Sput200_3960; phage(gi119953658)  5e-90  Click
20 complement(4431538..4432686)  PHAGE_Entero_Mu: putative protease protein; Sput200_3961; phage(gi9633523)  2e-47  Click
21 complement(4432972..4433430)  PHAGE_Rhodob_RcapMu: virion morphogenesis protein; Sput200_3962; phage(gi356870876)  7e-09  Click
22 complement(4433526..4434770)  PHAGE_Rhodob_RcapMu: head morphogenesis protein; Sput200_3963; phage(gi356870875)  1e-44  Click
23 complement(4434770..4436329)  PHAGE_Pseudo_D3112: portal protein; Sput200_3964; phage(gi38229139)  2e-110  Click
24 complement(4436329..4437990)  PHAGE_Entero_Mu: putative portal protein; Sput200_3965; phage(gi9633519)  6e-128  Click
25 complement(4437990..4438559)  PHAGE_Entero_Mu: hypothetical protein Mup27; Sput200_3966; phage(gi9633518)  1e-53  Click
26 complement(4438562..4438858)  PHAGE_Entero_Mu: hypothetical protein Mup26; Sput200_3967; phage(gi9633517)  1e-18  Click
27 complement(4438858..4439193)  conserved hypothetical protein; Sput200_3968  N/A  Click
28 complement(4439190..4439402)  DksA/TraR C4-like protein; Sput200_3969  N/A  Click
29 complement(4439487..4440056)  PHAGE_White__HKU16: spike glycoprotein; Sput200_3970; phage(gi383081736)  7e-05  Click
30 complement(4440053..4440625)  PHAGE_Salmon_vB_SemP_Emek: lysin; Sput200_3971; phage(gi399498856)  3e-20  Click
31 complement(4440615..4440911)  conserved hypothetical protein; Sput200_3972  N/A  Click
32 complement(4440990..4441436)  hypothetical protein; Sput200_3973  N/A  Click
33 complement(4441548..4441994)  PHAGE_Entero_Mu: putative transcription regulator; Sput200_3974; phage(gi9633511)  7e-16  Click
34 complement(4441984..4442514)  PHAGE_Haemop_SuMu: hypothetical protein; Sput200_3975; phage(gi418489048)  8e-26  Click
35 complement(4442511..4443095)  PHAGE_Entero_Mu: hypothetical protein Mup16; Sput200_3976; phage(gi9633506)  2e-21  Click
36 complement(4443095..4443313)  conserved hypothetical protein; Sput200_3977  N/A  Click
37 complement(4443412..4443870)  conserved hypothetical protein; Sput200_3978  N/A  Click
38 complement(4443882..4444082)  conserved hypothetical protein; Sput200_3979  N/A  Click
39 complement(4444173..4444805)  PHAGE_Pseudo_B3: hypothetical protein B3ORF6; Sput200_3980; phage(gi56692574)  3e-49  Click
40 complement(4444816..4445094)  conserved hypothetical protein; Sput200_3981  N/A  Click
41 complement(4445106..4445351)  hypothetical protein; Sput200_3982  N/A  Click
42 complement(4445354..4445566)  prophage MuSo1 kil protein, Kil_1; Sput200_3983  N/A  Click
43 complement(4445609..4446592)  PHAGE_Entero_Mu: DNA transposition protein; Sput200_3984; phage(gi9633513)  9e-83  Click
44 complement(4446635..4448632)  PHAGE_Entero_Mu: transposase; Sput200_3985; phage(gi9633496)  1e-169  Click
45 complement(4448629..4449114)  PHAGE_Burkho_BcepMu: gp13; Sput200_3986; phage(gi48696923)  1e-45  Click
46 complement(4449235..4449537)  PHAGE_Entero_Mu: DNA binding protein ner; Sput200_3987; phage(gi9633495)  1e-14  Click
47 4449698..4450456  PHAGE_Aeromo_phiO18P: putative cI repressor; Sput200_3988; phage(gi148727133)  3e-31  Click
48 4457039..4457053  attR    GGTAAACTCGCTGCA  N/A  Click