Definition Desulfovibrio vulgaris RCH1, complete genome.
Accession CP002297
Length 3,532,052
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 18 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1205542..1206444)  PHAGE_Parame_AR158: hypothetical protein AR158_C204R; Deval_1013; phage(gi157953395)  6e-22  Click
2 1206592..1207335  ApbE family lipoprotein; Deval_1014  N/A  Click
3 1207408..1207483  tRNA  N/A  Click
4 complement(1207755..1208498)  PHAGE_Bordet_1: adenine DNA methyltransferase; Deval_1015; phage(gi41179391)  4e-56  Click
5 complement(1208476..1208670)  PHAGE_Burkho_KS5: gp21; Deval_1016; phage(gi327198019)  2e-10  Click
6 complement(1208928..1209374)  PHAGE_Azospi_Cd: hypothetical protein APCd_gp51; Deval_1017; phage(gi168495154)  3e-06  Click
7 complement(1209388..1210905)  PHAGE_Erwini_ENT90: phage tail collar domain protein; Deval_1018; phage(gi431810938)  4e-24  Click
8 complement(1210907..1211563)  hypothetical protein; Deval_1019  N/A  Click
9 complement(1211564..1211716)  hypothetical protein; Deval_1020  N/A  Click
10 complement(1211718..1212899)  PHAGE_Haemop_HP2: orf29; Deval_1021; phage(gi17981845)  1e-14  Click
11 complement(1212877..1213311)  PHAGE_Lactob_LP65: hypothetical protein LP65_gp132; Deval_1022; phage(gi56693180)  3e-05  Click
12 complement(1213308..1214039)  PHAGE_Haemop_HP2: orf35; Deval_1023; phage(gi17981851)  7e-07  Click
13 complement(1214026..1214826)  hypothetical protein; Deval_1024  N/A  Click
14 complement(1214972..1215523)  hypothetical protein; Deval_1025  N/A  Click
15 complement(1215520..1217862)  PHAGE_Vibrio_VP882: phage-related tail protein; Deval_1026; phage(gi126010872)  6e-87  Click
16 complement(1218063..1218395)  hypothetical protein; Deval_1027  N/A  Click
17 1218628..1219650  PHAGE_Pseudo_phi297: putative ParA protein; Deval_1028; phage(gi374531271)  3e-51  Click
18 complement(1219710..1220156)  hypothetical protein; Deval_1029  N/A  Click
19 complement(1220169..1221854)  PHAGE_Haemop_HP2: tail sheath; Deval_1030; phage(gi17981837)  2e-05  Click
Region 2, total : 19 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1230114..1231598)  PHAGE_Burkho_phiE255: gp2; Deval_1041; phage(gi134288795)  9e-126  Click
2 complement(1231649..1232245)  hypothetical protein; Deval_1042  N/A  Click
3 complement(1232257..1232499)  hypothetical protein; Deval_1043  N/A  Click
4 complement(1232496..1232969)  hypothetical protein; Deval_1044  N/A  Click
5 complement(1232966..1233271)  hypothetical protein; Deval_1045  N/A  Click
6 complement(1233225..1233638)  hypothetical protein; Deval_1046  N/A  Click
7 complement(1233631..1234296)  PHAGE_Burkho_phiE255: gp52; Deval_1047; phage(gi134288836)  6e-62  Click
8 complement(1234296..1234664)  PHAGE_Burkho_phiE255: gp51; Deval_1048; phage(gi134288831)  6e-22  Click
9 complement(1234738..1235202)  DNA-binding protein; Deval_1049  N/A  Click
10 complement(1235186..1235551)  hypothetical protein; Deval_1050  N/A  Click
11 complement(1235548..1236024)  PHAGE_Pseudo_JBD5: hypothetical protein; Deval_1051; phage(gi448245005)  1e-07  Click
12 complement(1236021..1236479)  hypothetical protein; Deval_1052  N/A  Click
13 complement(1236561..1236848)  PHAGE_Burkho_phiE255: gp35; Deval_1053; phage(gi134288835)  3e-08  Click
14 complement(1236862..1237101)  hypothetical protein; Deval_1054  N/A  Click
15 complement(1237119..1237631)  PHAGE_Rhodob_RcapMu: host-nuclease inhibitor Gam; Deval_1055; phage(gi356870857)  4e-08  Click
16 complement(1237633..1237821)  hypothetical protein; Deval_1056  N/A  Click
17 complement(1237824..1238456)  hypothetical protein; Deval_1057  N/A  Click
18 complement(1238449..1239186)  PHAGE_Rhodob_RcapMu: transposition protein B; Deval_1058; phage(gi356870854)  7e-13  Click
19 complement(1239183..1241336)  PHAGE_Pseudo_MP22: transposase A; Deval_1059; phage(gi157834977)  4e-22  Click
Region 3, total : 22 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1762479..1762492  attL    CTTCATGCCGTAAC  N/A  Click
2 1775789..1776433  PHAGE_Bacill_BtCS33: integrase; Deval_1561; phage(gi392972759)  1e-12  Click
3 1776411..1776608  DNA binding domain protein, excisionase family; Deval_1562  N/A  Click
4 1776611..1776829  hypothetical protein; Deval_1563  N/A  Click
5 complement(1776936..1777130)  hypothetical protein; Deval_1564  N/A  Click
6 complement(1777278..1781078)  hypothetical protein; Deval_1565  N/A  Click
7 complement(1781680..1781985)  PHAGE_Azospi_Cd: Helix-turn-helix motif; Deval_1566; phage(gi168495160)  9e-11  Click
8 complement(1781995..1782273)  plasmid maintenance system killer; Deval_1567  N/A  Click
9 1782544..1782960  PHAGE_Salmon_SSU5: putative endolysin; Deval_1568; phage(gi410491437)  1e-28  Click
10 1782960..1783310  hypothetical protein; Deval_1569  N/A  Click
11 1783307..1783555  urease accessory protein; Deval_1570  N/A  Click
12 1783691..1784299  PHAGE_Lactoc_Tuc2009: hypothetical protein Tuc2009_28; Deval_1571; phage(gi13487829)  3e-22  Click
13 1784286..1785890  PHAGE_Erwini_vB_EamP_S6: gp098; Deval_1572; phage(gi422935937)  9e-12  Click
14 1785887..1786441  hypothetical protein; Deval_1573  N/A  Click
15 1786438..1786791  PHAGE_Salmon_SPN1S: hypothetical protein; Deval_1574; phage(gi374531196)  2e-06  Click
16 1786792..1788444  PHAGE_Entero_phiV10: putative head-to-tail-joining protein; Deval_1575; phage(gi89152428)  3e-62  Click
17 1788444..1788776  hypothetical protein; Deval_1576  N/A  Click
18 1788773..1789612  PHAGE_Burkho_BcepC6B: hypothetical protein BcepC6B_gp07; Deval_1577; phage(gi48697197)  2e-11  Click
19 1789617..1790549  hypothetical protein; Deval_1578  N/A  Click
20 1790606..1791007  hypothetical protein; Deval_1579  N/A  Click
21 1791019..1791363  hypothetical protein; Deval_1580  N/A  Click
22 1791405..1791992  PHAGE_Burkho_BcepC6B: hypothetical protein BcepC6B_gp11; Deval_1581; phage(gi48697201)  2e-18  Click
23 1792165..1794258  PHAGE_Burkho_BcepC6B: hypothetical protein BcepC6B_gp12; Deval_1582; phage(gi48697202)  3e-81  Click
24 1799795..1799808  attR    CTTCATGCCGTAAC  N/A  Click
Region 4, total : 16 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1999140..1999634  PHAGE_Burkho_Bcep176: gp8; Deval_1781; phage(gi77864633)  6e-30  Click
2 1999621..1999881  hypothetical protein; Deval_1782  N/A  Click
3 2000223..2000786  hypothetical protein; Deval_1783  N/A  Click
4 2001332..2001739  PHAGE_Pseudo_MP42: putative structural protein; Deval_1784; phage(gi399528602)  1e-28  Click
5 2001739..2002089  hypothetical protein; Deval_1785  N/A  Click
6 2002086..2002334  hypothetical protein; Deval_1786  N/A  Click
7 2002354..2002752  PHAGE_Burkho_phiE125: putative class I holin; Deval_1787; phage(gi17975232)  2e-25  Click
8 2002836..2003303  PHAGE_Tetras_SI1: terminase small subunit; Deval_1788; phage(gi472342259)  8e-18  Click
9 2003308..2005005  PHAGE_Entero_phiP27: putative terminase; Deval_1789; phage(gi18249900)  2e-158  Click
10 2005005..2006264  PHAGE_Burkho_KS9: portal protein gp3; Deval_1790; phage(gi255033735)  7e-49  Click
11 2006257..2006991  PHAGE_Burkho_KS9: protease/scaffold protein gp4; Deval_1791; phage(gi255033736)  1e-60  Click
12 2006988..2007101  hypothetical protein; Deval_1792  N/A  Click
13 2007196..2008392  PHAGE_Burkho_KS9: major capsid protein gp5; Deval_1793; phage(gi255033737)  3e-68  Click
14 2008438..2008707  hypothetical protein; Deval_1794  N/A  Click
15 2008711..2009268  PHAGE_Burkho_KS9: hypothetical protein gp6; Deval_1795; phage(gi255033738)  5e-08  Click
16 2009268..2009594  PHAGE_Geobac_E2: putative head-tail adaptor; Deval_1796; phage(gi148747735)  8e-15  Click
Region 5, total : 12 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(2251039..2252778)  PHAGE_Ostreo_2: fibronectin-binding A-like protein-possible host origin; Deval_1998; phage(gi314055294)  5e-05  Click
2 complement(2252798..2253160)  transcriptional regulator, TraR/DksA family; Deval_1999  N/A  Click
3 2253607..2253738  hypothetical protein; Deval_2000  N/A  Click
4 2253906..2253980  tRNA  N/A  Click
5 2253992..2254066  tRNA  N/A  Click
6 2254074..2254148  tRNA  N/A  Click
7 2254181..2254255  tRNA  N/A  Click
8 complement(2254349..2254708)  PHAGE_Marino_P12026: hypothetical protein; Deval_2001; phage(gi399528336)  4e-05  Click
9 complement(2254718..2255734)  hypothetical protein; Deval_2002  N/A  Click
10 complement(2255736..2259776)  PHAGE_Rhodov_RS1: tail fiber protein; Deval_2003; phage(gi472342928)  5e-78  Click
11 complement(2259766..2260191)  PHAGE_Rhodov_RS1: tail assembly protein; Deval_2004; phage(gi472342927)  8e-19  Click
12 complement(2260191..2260700)  PHAGE_Rhodov_RS1: hypothetical protein; Deval_2005; phage(gi472342926)  3e-16  Click
13 complement(2260697..2261062)  PHAGE_Rhodov_RS1: hypothetical protein; Deval_2006; phage(gi472342925)  4e-05  Click
14 complement(2261062..2263983)  PHAGE_Plankt_PaV_LD: tail tape measure protein; Deval_2007; phage(gi371496213)  2e-21  Click
15 complement(2264282..2264632)  hypothetical protein; Deval_2009  N/A  Click
16 complement(2264641..2265585)  PHAGE_Gordon_GTE7: hypothetical protein; Deval_2010; phage(gi358356866)  2e-05  Click
Region 6, total : 43 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2804457..2806652  PHAGE_Pseudo_D3112: A transposase; Deval_2482; phage(gi38229118)  2e-102  Click
2 2806661..2807446  PHAGE_Rhodov_RS1: transposase; Deval_2483; phage(gi472342883)  3e-16  Click
3 2807449..2808036  PHAGE_Rhodob_RcapMu: TroR domain transcriptional regulator; Deval_2484; phage(gi356870855)  6e-16  Click
4 2808029..2808358  PHAGE_Rhodob_RcapMu: LacI-like regulatory protein; Deval_2485; phage(gi356870856)  2e-17  Click
5 2808361..2808843  hypothetical protein; Deval_2486  N/A  Click
6 2808853..2809089  two component LuxR family transcriptional regulator; Deval_2487  N/A  Click
7 2809175..2809414  hypothetical protein; Deval_2488  N/A  Click
8 2809496..2809930  hypothetical protein; Deval_2489  N/A  Click
9 2809939..2810355  PHAGE_Pseudo_JBD88a: hypothetical protein; Deval_2490; phage(gi448244704)  1e-25  Click
10 2810364..2810840  PHAGE_Pseudo_JBD5: hypothetical protein; Deval_2491; phage(gi448245006)  1e-19  Click
11 2810853..2811191  hypothetical protein; Deval_2492  N/A  Click
12 2811304..2811666  PHAGE_Pseudo_B3: holin; Deval_2493; phage(gi56692592)  1e-07  Click
13 2811666..2812313  PHAGE_Burkho_phiE255: gp52; Deval_2494; phage(gi134288836)  9e-63  Click
14 2812306..2812725  hypothetical protein; Deval_2495  N/A  Click
15 2812679..2812972  hypothetical protein; Deval_2496  N/A  Click
16 2812976..2813257  hypothetical protein; Deval_2497  N/A  Click
17 2813244..2813459  PHAGE_Pseudo_MP42: hypothetical protein; Deval_2498; phage(gi399528603)  2e-06  Click
18 2813461..2813979  PHAGE_Pseudo_MP42: hypothetical protein; Deval_2499; phage(gi399528604)  2e-40  Click
19 2813976..2815652  PHAGE_Pseudo_DMS3: hypothetical protein DMS3-26; Deval_2500; phage(gi119953651)  0.0  Click
20 2815639..2817357  PHAGE_Pseudo_MP42: portal protein; Deval_2501; phage(gi399528608)  3e-111  Click
21 2817360..2818610  PHAGE_Escher_D108: virion morphogenesis; Deval_2502; phage(gi281199673)  2e-66  Click
22 2818775..2819263  PHAGE_Escher_D108: virion morphogenesis protein; Deval_2503; phage(gi281199674)  4e-16  Click
23 2819970..2821151  PHAGE_Pseudo_JBD30: hypothetical protein; Deval_2504; phage(gi448244621)  2e-55  Click
24 2821152..2822081  PHAGE_Pseudo_DMS3: hypothetical protein DMS3-33; Deval_2505; phage(gi119953658)  3e-96  Click
25 2822093..2822422  hypothetical protein; Deval_2506  N/A  Click
26 2822422..2822853  PHAGE_Haemop_SuMu: Mu-like prophage protein gp36; Deval_2507; phage(gi418489087)  9e-15  Click
27 2822850..2823479  PHAGE_Haemop_SuMu: Mu-like prophage protein gp37; Deval_2508; phage(gi418489088)  1e-09  Click
28 2823482..2823667  PHAGE_Haemop_SuMu: hypothetical protein; Deval_2509; phage(gi418489089)  9e-11  Click
29 2823654..2825075  PHAGE_Haemop_SuMu: tail sheath protein gpL; Deval_2510; phage(gi418489090)  1e-108  Click
30 2825154..2825981  hypothetical protein; Deval_2511  N/A  Click
31 2826117..2826491  PHAGE_Haemop_SuMu: tail tube protein; Deval_2512; phage(gi418489063)  2e-26  Click
32 2826689..2827018  hypothetical protein; Deval_2513  N/A  Click
33 2827177..2829117  PHAGE_Haemop_SuMu: bacteriophage tail length determination protein; Deval_2514; phage(gi418489066)  5e-74  Click
34 2829137..2830477  PHAGE_Haemop_SuMu: DNA circulation protein; Deval_2515; phage(gi418489067)  2e-25  Click
35 2830467..2831621  PHAGE_Haemop_SuMu: Mu-like prophage tail protein gpP; Deval_2516; phage(gi418489068)  7e-64  Click
36 2831618..2832244  PHAGE_Haemop_SuMu: phage-related baseplate assembly protein gp45; Deval_2517; phage(gi418489069)  3e-39  Click
37 2832705..2833061  PHAGE_Haemop_SuMu: Mu bacteriophage protein gp46; Deval_2518; phage(gi418489070)  1e-25  Click
38 2833071..2834132  PHAGE_Haemop_SuMu: baseplate J family protein gp47; Deval_2519; phage(gi418489071)  3e-75  Click
39 2834129..2834722  PHAGE_Haemop_SuMu: hypothetical protein; Deval_2520; phage(gi418489072)  6e-23  Click
40 2834806..2835696  PROPHAGE_Salmon_Ty2: variable tail fiber protein; Deval_2521; phage(gi29143754)  1e-20  Click
41 2835706..2836245  PROPHAGE_Escher_MG1655: Qin prophage; predicted tail fibre assembly protein; Deval_2522; phage(gi16129505)  1e-07  Click
42 2836546..2836746  PHAGE_Pseudo_B3: Com translational regulator; Deval_2523; phage(gi56692616)  1e-07  Click
43 2836719..2837468  PHAGE_Bordet_1: adenine DNA methyltransferase; Deval_2524; phage(gi41179391)  1e-55  Click
Region 7, total : 49 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2939318..2939362  attL    TGGCGCGCCCGGGAGGATTCGAACCCCCGGCCAAGAGCTTAGAAG  N/A  Click
2 2939415..2940788  PHAGE_Lactob_LF1: phage integrase; Deval_2609; phage(gi418489411)  7e-15  Click
3 complement(2940790..2941032)  hypothetical protein; Deval_2610  N/A  Click
4 complement(2941097..2941462)  hypothetical protein; Deval_2611  N/A  Click
5 complement(2941547..2941759)  hypothetical protein; Deval_2612  N/A  Click
6 complement(2941845..2942039)  hypothetical protein; Deval_2613  N/A  Click
7 complement(2942026..2942487)  transcriptional regulator CII, putative; Deval_2614  N/A  Click
8 2942645..2942974  hypothetical protein; Deval_2615  N/A  Click
9 complement(2942964..2943302)  hypothetical protein; Deval_2616  N/A  Click
10 complement(2943372..2943644)  helix-turn-helix domain protein; Deval_2617  N/A  Click
11 2943762..2944187  PHAGE_Rhodob_RcapMu: c-repressor; Deval_2618; phage(gi356870844)  7e-07  Click
12 2944300..2945373  protein of unknown function DUF450; Deval_2619  N/A  Click
13 2945445..2946782  PHAGE_Cafete_BV_PW1: putative HD superfamily phosphohydrolase; Deval_2620; phage(gi310831117)  8e-25  Click
14 2946783..2947307  hypothetical protein; Deval_2621  N/A  Click
15 complement(2947416..2948117)  hypothetical protein; Deval_2622  N/A  Click
16 complement(2948117..2949316)  PHAGE_Burkho_KL3: gp45; Deval_2623; phage(gi327198090)  6e-88  Click
17 2949456..2950532  PHAGE_Burkho_KL3: gp47; Deval_2624; phage(gi327198092)  5e-87  Click
18 2950968..2951831  hypothetical protein; Deval_2625  N/A  Click
19 2951839..2952267  PHAGE_Strept_phiSASD1: gp4; Deval_2626; phage(gi298103512)  5e-27  Click
20 complement(2952573..2952902)  hypothetical protein; Deval_2627  N/A  Click
21 complement(2952914..2953453)  PROPHAGE_Escher_MG1655: Qin prophage; predicted tail fibre assembly protein; Deval_2628; phage(gi16129505)  3e-07  Click
22 complement(2953463..2954278)  PHAGE_Synech_S_CRM01: tail collar domain containing protein; Deval_2629; phage(gi333798173)  2e-15  Click
23 complement(2954271..2954897)  PHAGE_Entero_Mu: hypothetical protein Mup48; Deval_2630; phage(gi9633539)  2e-11  Click
24 complement(2954906..2955967)  PHAGE_Entero_Mu: hypothetical protein Mup47; Deval_2631; phage(gi9633538)  5e-45  Click
25 complement(2955976..2956452)  PHAGE_Entero_Mu: hypothetical protein Mup46; Deval_2632; phage(gi9633537)  1e-23  Click
26 complement(2956454..2957092)  PHAGE_Entero_Mu: putative baseplate assembly protein; Deval_2633; phage(gi9633536)  3e-29  Click
27 complement(2957094..2958227)  PHAGE_Entero_Mu: putative tail protein; Deval_2634; phage(gi9633535)  9e-45  Click
28 complement(2958220..2958357)  hypothetical protein; Deval_2635  N/A  Click
29 complement(2958350..2959549)  PHAGE_Entero_Mu: putative DNA circulation protein; Deval_2636; phage(gi9633534)  2e-13  Click
30 complement(2959558..2961132)  PHAGE_Mannhe_phiMHaA1: tail protein T; Deval_2637; phage(gi109289951)  9e-63  Click
31 complement(2961248..2961508)  hypothetical protein; Deval_2638  N/A  Click
32 complement(2961508..2961873)  PHAGE_Entero_Mu: hypothetical protein Mup40; Deval_2639; phage(gi9633531)  1e-07  Click
33 complement(2961923..2963386)  PHAGE_Entero_Mu: major tail subunit; Deval_2640; phage(gi9633530)  2e-109  Click
34 complement(2963390..2963581)  PHAGE_Entero_Mu: hypothetical protein Mup38; Deval_2641; phage(gi9633529)  7e-08  Click
35 complement(2963565..2964122)  hypothetical protein; Deval_2642  N/A  Click
36 complement(2964119..2964445)  hypothetical protein; Deval_2643  N/A  Click
37 complement(2964442..2965035)  hypothetical protein; Deval_2644  N/A  Click
38 complement(2965038..2965205)  hypothetical protein; Deval_2645  N/A  Click
39 complement(2965198..2965608)  hypothetical protein; Deval_2646  N/A  Click
40 complement(2965626..2966195)  PHAGE_Pseudo_AF: putative endolysin; Deval_2647; phage(gi431810312)  2e-13  Click
41 complement(2966195..2966683)  PHAGE_Entero_EF62phi: holin; Deval_2648; phage(gi384519787)  6e-06  Click
42 complement(2966686..2967033)  hypothetical protein; Deval_2649  N/A  Click
43 complement(2967042..2968046)  PHAGE_Burkho_BcepNazgul: capsid protein E; Deval_2650; phage(gi34610166)  8e-18  Click
44 complement(2968058..2968441)  PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; Deval_2651; phage(gi428782730)  9e-05  Click
45 complement(2968451..2969770)  PHAGE_Entero_01: Putative head maturation protease; Deval_2652; phage(gi38707715)  3e-28  Click
46 complement(2969754..2971454)  PHAGE_Gifsy_1: bacteriophage portal protein; Lambda gpB homolog; Deval_2653; phage(gi169257233)  6e-33  Click
47 complement(2971458..2971733)  hypothetical protein; Deval_2654  N/A  Click
48 complement(2971960..2972388)  hypothetical protein; Deval_2655  N/A  Click
49 complement(2972381..2972599)  DNA binding domain protein, excisionase family; Deval_2656  N/A  Click
50 complement(2972596..2974608)  PHAGE_Synech_S_CBS3: large terminase subunit; Deval_2657; phage(gi331028008)  9e-26  Click
51 2980790..2980834  attR    TGGCGCGCCCGGGAGGATTCGAACCCCCGGCCAAGAGCTTAGAAG  N/A  Click